Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004200.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

5125 .. 5721

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004200.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgctagcaaagtctagctggagaattctcaataatgattctgggttgtggcccaacatatacaaagaaaaatatcttcgcaaatgcactttgactgctactaactatcaaatccccaaggattgttctaatacctggaggagcattgttcatggtgctgctttgctgaaacgtggccttgtttggagggtgggaaatggaaaaaaaattaacttttggtctgatgtttggttacctccaaagcctcttattaaccatgttctaccttctgcatctttcattttggatgataagattgagagcttttgggatgatcatggctggaacctcaccaaactctctacttgtctccctcagaccatcattgatcaaattatgcatattccttccggctttgatggttgcggtgtagatgtccagatttgggggtacacttcctgtggttatttcagtgtcaaatctacttatggtatgttctttgattctcattgtcatactacttctccatggaaattcatatggaaaatgcatttaattcaaagggaacttgggctattccatgtccttgaattaatattaatggcccagtcgtcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

198

Amino Acids

22.85

Weight (kDa)

8.88

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	24, 512
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	539, 569
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	18, 303
AluI	AGCT	2 cut(s)	18, 303
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	50, 175, 582
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	24, 512
AseI	ATTAAT	2 cut(s)	572, 578
AspS9I	GGNCC	2 cut(s)	51, 583
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	368, 392
BciT130I	CCWGG	1 cut(s)	136
BclI	TGATCA	2 cut(s)	313, 367
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	2 cut(s)	5, 15
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	51, 583
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	1 cut(s)	281
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	580
BpmI	CTGGAG	2 cut(s)	40, 157
BsaJI	CCNNGG	2 cut(s)	117, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	117, 506
BseGI	GGATG	2 cut(s)	292, 316
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	52, 177, 584
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	52, 177, 584
Bsp143I	GATC	2 cut(s)	313, 367
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	3 cut(s)	52, 177, 584
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	326
BspOI	GCTAGC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	117, 506
BssMI	GATC	2 cut(s)	313, 367
BssT1I	CCWWGG	2 cut(s)	117, 506
Bst2UI	CCWGG	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	506
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	292, 316
BstKTI	GATC	2 cut(s)	316, 370
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	313, 367
BstNI	CCWGG	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	52, 177, 584
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	292, 316
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	51, 583
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	5 cut(s)	152, 257, 317, 507, 560
CviJI	RGCY	9 cut(s)	18, 52, 177, 244, 303, 321, 393, 553, 584
CviKI_1	RGCY	9 cut(s)	18, 52, 177, 244, 303, 321, 393, 553, 584
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	315, 369
DpnII	GATC	2 cut(s)	313, 367
Eco130I	CCWWGG	2 cut(s)	117, 506
Eco91I	GGTNACC	1 cut(s)	231
EcoO65I	GGTNACC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	117, 506
EcoT22I	ATGCAT	2 cut(s)	381, 531
ErhI	CCWWGG	2 cut(s)	117, 506
FaeI	CATG	5 cut(s)	155, 260, 320, 510, 563
FatI	CATG	5 cut(s)	151, 256, 316, 506, 559
FauNDI	CATATG	1 cut(s)	518
FbaI	TGATCA	2 cut(s)	313, 367
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	299, 323
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	5, 15
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	2 cut(s)	40, 157
HaeIII	GGCC	3 cut(s)	52, 177, 584
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	5 cut(s)	155, 260, 320, 510, 563
HinfI	GANTC	2 cut(s)	38, 482
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	2 cut(s)	223, 357
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	276, 396
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	87, 272, 379, 529
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	5 cut(s)	155, 260, 320, 510, 563
Ksp22I	TGATCA	2 cut(s)	313, 367
Kzo9I	GATC	2 cut(s)	313, 367
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	8 cut(s)	4, 27, 121, 148, 307, 403, 431, 451
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	5, 15
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	315, 369
MboI	GATC	2 cut(s)	313, 367
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	6 cut(s)	24, 207, 372, 512, 534, 569
MnlI	CCTC	6 cut(s)	132, 180, 246, 255, 338, 363
Mph1103I	ATGCAT	2 cut(s)	381, 531
MseI	TTAA	5 cut(s)	210, 252, 533, 572, 578
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	2 cut(s)	313, 367
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	155, 260, 320, 510, 563
NlaIV	GGNNCC	1 cut(s)	326
NsiI	ATGCAT	2 cut(s)	381, 531
PfeI	GAWTC	2 cut(s)	38, 482
PkrI	GCNGC	1 cut(s)	160
PshBI	ATTAAT	2 cut(s)	572, 578
Psp6I	CCWGG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	51, 583
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	5 cut(s)	210, 252, 533, 572, 578
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	313, 367
Sau96I	GGNCC	2 cut(s)	51, 583
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	7 cut(s)	20, 137, 175, 238, 268, 305, 330
SfaNI	GCATC	1 cut(s)	281
Sse9I	AATT	6 cut(s)	24, 207, 372, 512, 534, 569
SsiI	CCGC	1 cut(s)	405
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	5, 15
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	117, 506
TaiI	ACGT	1 cut(s)	175
TasI	AATT	6 cut(s)	24, 207, 372, 512, 534, 569
TfiI	GAWTC	2 cut(s)	38, 482
Tru1I	TTAA	5 cut(s)	210, 252, 533, 572, 578
Tru9I	TTAA	5 cut(s)	210, 252, 533, 572, 578
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	140, 268, 505
TspRI	CASTG	1 cut(s)	457
VspI	ATTAAT	2 cut(s)	572, 578
XapI	RAATTY	2 cut(s)	24, 512
XspI	CTAG	2 cut(s)	5, 15
Zsp2I	ATGCAT	2 cut(s)	381, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.