Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009440.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

12528 .. 14275

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009440.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgagtcagttgtacaactctccagaacaaaagagcaatgttcttagcatggcaggtcgattaaccttaattaattctgtctgttcctctatacctgtttatgcaatgcaaactgccaagctccccctgcagctttgccataacattgataaattaaacagagattttttatggggtgatattgaaaacagaaagagagttcatcttgaaaattgggatgttgtttacctacctaaatgtctaggtggacttggcattaaaaaaactgaagacatgaaccaggccatgatagccaaggctagttggagaatttttcatggtgacaatggtctctggagttccatttataagtataaataccttgcgaatgccaatattactagtattgactattctcctccttctgggagctcaagcacgtggaggagcattgctcatggtgcctcacttctaaggcaaggtcttatttcgagaattggggatggcatgactgcaaagttttggactgatcactggctgggtacgtttcctctcattgatgttgctttgcctggttattcggctaacattgatgatactgttagtatcttttggaacaacaatggatgggacattgataaattacaaatttgtttgcctgagacatttattcaacagatcttgagcattcctcctgggtttgagggatgtggccctgatatccaaatatgggatatacttctaatggtcgctttactggattgtcctaaggccatggctgtttgggaaactttcaattggcctactgctgtgaaacacactttcaaccttgattggattggatggcttgctgttgctgcaaatctccactgttttatgattaatgttggtaaaggacaggttcttactgctgaggcttggggcttgctttctggcttgaaacttgctactgatttacaggttaaaaagattgaaattgaatctgactctgccatgctcatcaaactcattgttgaaggctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

334

Amino Acids

37.32

Weight (kDa)

5.97

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	309, 627
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	14, 523
AfiI	CCNNNNNNNGG	2 cut(s)	404, 709
AgsI	TTSAA	9 cut(s)	185, 209, 653, 775, 805, 919, 953, 959, 995
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	3 cut(s)	279, 550, 673
AluBI	AGCT	3 cut(s)	121, 133, 411
AluI	AGCT	3 cut(s)	121, 133, 411
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	335, 635
AoxI	GGCC	4 cut(s)	282, 691, 750, 779
ApeKI	GCWGC	2 cut(s)	130, 836
ApoI	RAATTY	2 cut(s)	309, 627
AseI	ATTAAT	2 cut(s)	72, 861
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	188, 332
AxyI	CCTNAGG	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	413
BbrPI	CACGTG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	142, 823
BccI	CCATC	3 cut(s)	476, 600, 816
BciT130I	CCWGG	3 cut(s)	281, 552, 675
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	335, 635
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	3 cut(s)	242, 300, 381
BfmI	CTRYAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	2 cut(s)	131, 837
BlsI	GCNGC	2 cut(s)	132, 838
Bme1390I	CCNGG	3 cut(s)	281, 552, 675
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	3 cut(s)	281, 552, 675
BoxI	GACNNNNGTC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	4 cut(s)	418, 450, 655, 687
BpmI	CTGGAG	2 cut(s)	6, 355
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	397, 682
BsaAI	YACGTR	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	294, 674, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 709
Bse1I	ACTGG	2 cut(s)	518, 741
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	3 cut(s)	43, 111, 429
BseBI	CCWGG	3 cut(s)	281, 552, 675
BseDI	CCNNGG	3 cut(s)	294, 674, 753
BseGI	GGATG	5 cut(s)	223, 487, 611, 692, 827
BseLI	CCNNNNNNNGG	2 cut(s)	404, 709
BseMI	GCAATG	3 cut(s)	43, 111, 429
BseMII	CTCAG	2 cut(s)	630, 882
BseNI	ACTGG	2 cut(s)	518, 741
BseRI	GAGGAG	2 cut(s)	387, 439
BseXI	GCAGC	2 cut(s)	142, 823
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	4 cut(s)	284, 693, 752, 781
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	404, 709
BsmAI	GTCTC	2 cut(s)	335, 635
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	2 cut(s)	373, 666
BsnI	GGCC	4 cut(s)	284, 693, 752, 781
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	508, 657
Bsp19I	CCATGG	1 cut(s)	753
BspANI	GGCC	4 cut(s)	284, 693, 752, 781
BspCNI	CTCAG	2 cut(s)	631, 883
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	3 cut(s)	43, 111, 429
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	518, 741
BssECI	CCNNGG	3 cut(s)	294, 674, 753
BssMI	GATC	2 cut(s)	508, 657
BssT1I	CCWWGG	2 cut(s)	294, 753
Bst2UI	CCWGG	3 cut(s)	281, 552, 675
Bst4CI	ACNGT	2 cut(s)	580, 851
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	828, 905
BstDEI	CTNAG	5 cut(s)	44, 452, 639, 747, 891
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	5 cut(s)	223, 487, 611, 692, 827
BstKTI	GATC	2 cut(s)	511, 660
BstMAI	GTCTC	2 cut(s)	335, 635
BstMBI	GATC	2 cut(s)	508, 657
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 290, 440, 836
BstNI	CCWGG	3 cut(s)	281, 552, 675
BstPAI	GACNNNNGTC	1 cut(s)	327
BstSCI	CCNGG	3 cut(s)	279, 550, 673
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	142, 823
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	4 cut(s)	284, 693, 752, 781
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	5 cut(s)	223, 487, 611, 692, 827
BtsIMutI	CAGTG	2 cut(s)	511, 847
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	828, 905
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	13, 522
CviAII	CATG	8 cut(s)	49, 274, 286, 317, 437, 487, 754, 973
CviQI	GTAC	2 cut(s)	13, 522
DdeI	CTNAG	5 cut(s)	44, 452, 639, 747, 891
DpnI	GATC	2 cut(s)	510, 659
DpnII	GATC	2 cut(s)	508, 657
Ecl136II	GAGCTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	294, 753
Eco24I	GRGCYC	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	411
EcoRII	CCWGG	3 cut(s)	279, 550, 673
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	294, 753
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	294, 753
FaeI	CATG	8 cut(s)	52, 277, 289, 320, 440, 490, 757, 976
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	8 cut(s)	48, 273, 285, 316, 436, 486, 753, 972
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	131, 837
FokI	GGATG	5 cut(s)	230, 494, 618, 699, 834
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	131, 837
FspBI	CTAG	3 cut(s)	242, 300, 381
GluI	GCNGC	2 cut(s)	131, 837
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	2 cut(s)	6, 355
HaeIII	GGCC	4 cut(s)	284, 693, 752, 781
Hin1II	CATG	8 cut(s)	52, 277, 289, 320, 440, 490, 757, 976
HinfI	GANTC	3 cut(s)	4, 959, 965
HphI	GGTGA	2 cut(s)	188, 332
Hpy166II	GTNNAC	2 cut(s)	226, 248
Hpy188I	TCNGA	1 cut(s)	964
Hpy188III	TCNNGA	5 cut(s)	23, 206, 334, 471, 661
Hpy8I	GTNNAC	2 cut(s)	226, 248
HpyAV	CCTTC	2 cut(s)	411, 989
HpyCH4III	ACNGT	2 cut(s)	580, 851
HpyCH4IV	ACGT	2 cut(s)	419, 524
HpyCH4V	TGCA	5 cut(s)	104, 109, 130, 494, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 290, 440, 836
HpyF3I	CTNAG	5 cut(s)	44, 452, 639, 747, 891
HpySE526I	ACGT	2 cut(s)	419, 524
Hsp92II	CATG	8 cut(s)	52, 277, 289, 320, 440, 490, 757, 976
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	508, 657
LmnI	GCTCC	3 cut(s)	126, 408, 426
Lsp1109I	GCAGC	2 cut(s)	142, 823
MaeI	CTAG	3 cut(s)	242, 300, 381
MaeII	ACGT	2 cut(s)	419, 524
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	510, 659
MboI	GATC	2 cut(s)	508, 657
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	13, 959
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	8 cut(s)	97, 408, 417, 454, 540, 676, 681, 886
MseI	TTAA	7 cut(s)	62, 68, 72, 155, 258, 861, 942
MspR9I	CCNGG	3 cut(s)	281, 552, 675
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	2 cut(s)	373, 666
MvaI	CCWGG	3 cut(s)	281, 552, 675
MwoI	GCNNNNNNNGC	4 cut(s)	127, 290, 440, 836
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	508, 657
NlaIII	CATG	8 cut(s)	52, 277, 289, 320, 440, 490, 757, 976
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	320
PacI	TTAATTAA	1 cut(s)	72
PctI	GAATGC	2 cut(s)	373, 666
PfeI	GAWTC	1 cut(s)	959
PkrI	GCNGC	2 cut(s)	132, 838
PleI	GAGTC	2 cut(s)	12, 959
PmaCI	CACGTG	1 cut(s)	420
PmlI	CACGTG	1 cut(s)	420
PpsI	GAGTC	2 cut(s)	12, 959
Ppu21I	YACGTR	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	327
PshBI	ATTAAT	2 cut(s)	72, 861
PsiI	TTATAA	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	279, 550, 673
PspCI	CACGTG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	3 cut(s)	279, 550, 673
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	2 cut(s)	14, 523
RsaNI	GTAC	2 cut(s)	13, 522
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	7 cut(s)	62, 68, 72, 155, 258, 861, 942
SatI	GCNGC	2 cut(s)	131, 837
Sau3AI	GATC	2 cut(s)	508, 657
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	2 cut(s)	13, 959
ScrFI	CCNGG	3 cut(s)	281, 552, 675
SduI	GDGCHC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	412, 661
SmoI	CTYRAG	2 cut(s)	412, 661
SpeI	ACTAGT	1 cut(s)	380
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	242, 300, 381
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	279, 550, 673
StyI	CCWWGG	2 cut(s)	294, 753
TaaI	ACNGT	2 cut(s)	580, 851
TaiI	ACGT	2 cut(s)	422, 527
TaqI	TCGA	2 cut(s)	58, 470
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	959
Tru1I	TTAA	7 cut(s)	62, 68, 72, 155, 258, 861, 942
Tru9I	TTAA	7 cut(s)	62, 68, 72, 155, 258, 861, 942
TscAI	CASTG	2 cut(s)	518, 854
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	130, 836
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	191, 290, 305
TspRI	CASTG	2 cut(s)	518, 854
VspI	ATTAAT	2 cut(s)	72, 861
XapI	RAATTY	2 cut(s)	309, 627
XspI	CTAG	3 cut(s)	242, 300, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.