Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001150.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

11634 .. 12902

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001150.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atgcctctaattcattctcgtgttactaagtttacttatgctagcatcttggataaagttcaaagtcgattggctggttggaaatgcaaagttctaagtttagctggcagattgactttaattcattcagttactgctgctattcctaattatgctatgcagactgctagattgcccatgtatatttgtgatgacttggacaaaataaatagaaactttttgtggggtgataatgacagtaagaaaaaaattcatttggtgaactgggatactgtttgtttgcctaagaatctcggtggtttaggtatcaagaaatcttctgatatgaatcaatctatgcttgctaaggctggttggaggttatttcaaaatgatactggtttgtgggcttcaatttatagagaaaagtatctgaaacatagctttttgtttggtcaaaactatcagcaatctaaggattgttctagtacttggagaagtgttcttcatggtgttaacttgttgaaaaaaggtttaatttggagggttggtgatggtagaacaattaggttttggactgacgtctggttccctcctattccccttattaattatgtcttgccagattctactgttaatattaatgctactatctgtagcttttggaatgataatggatgggacttaaatttgctttcctcttgtctccctgctgatattattgatcaaattttgcgcattcctcctggttttgatggttgtggaaatgacattcaaatttggggctgcacttctaatggttcattttcagtcaagtcagcttacaatattttctttgaggactatgatcaaagtaactctccttggaaatttatttggaaaatgcaaattcccccaaagctcaagacatttctatgggttctctgtcatggtaaacttctcaccaatgctcatagagttaaaaggaatctcacccatgatgatacttgtcctatatgcagcagcaatagtgagtccctttctcatctgtttaaagattgccctgctgctgttaatgtgtggaattctttcactttacctcagtcggttagatttactttttccatgagttgggaaggttggttgcaggctaatcttctttgcaaatccaaatgtaatgctgggaatctgtggtgctctacatttgttttcatatgctggttcatatggaaatggaggaacaagcatctatttgaggctcactttcaaaaacccaattatcctggtacgatcataattgctgctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

422

Amino Acids

48.46

Weight (kDa)

9.24

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
Acc16I	TGCGCA	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	1089
AcsI	RAATTY	7 cut(s)	249, 667, 708, 756, 848, 867, 1042
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	2 cut(s)	469, 1246
AfiI	CCNNNNNNNGG	1 cut(s)	1089
AgsI	TTSAA	6 cut(s)	62, 368, 393, 505, 755, 1226
AjnI	CCWGG	2 cut(s)	724, 1240
AluBI	AGCT	5 cut(s)	104, 423, 639, 800, 880
AluI	AGCT	5 cut(s)	104, 423, 639, 800, 880
Alw21I	GWGCWC	1 cut(s)	1157
Alw26I	GTCTC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	6 cut(s)	137, 765, 978, 981, 1025, 1259
ApoI	RAATTY	7 cut(s)	249, 667, 708, 756, 848, 867, 1042
AseI	ATTAAT	2 cut(s)	588, 621
Asp700I	GAANNNNTTC	1 cut(s)	1046
AspLEI	GCGC	1 cut(s)	717
AsuHPI	GGTGA	5 cut(s)	239, 271, 542, 913, 943
AsuNHI	GCTAGC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	1157
BbvI	GCAGC	6 cut(s)	124, 752, 990, 993, 1012, 1246
BccI	CCATC	3 cut(s)	527, 651, 728
BciT130I	CCWGG	2 cut(s)	726, 1242
BciVI	GTATCC	1 cut(s)	262
BclI	TGATCA	2 cut(s)	703, 826
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	3 cut(s)	42, 168, 465
BfmI	CTRYAG	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	6 cut(s)	138, 766, 979, 982, 1026, 1260
BlsI	GCNGC	6 cut(s)	139, 767, 980, 983, 1027, 1261
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	2 cut(s)	726, 1242
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	2 cut(s)	726, 1242
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	54, 1213
BmtI	GCTAGC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	274
BoxI	GACNNNNGTC	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	1089
Bse1I	ACTGG	2 cut(s)	269, 382
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	726, 1242
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	1 cut(s)	662
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	1089
BseMII	CTCAG	1 cut(s)	1073
BseNI	ACTGG	2 cut(s)	269, 382
BseXI	GCAGC	6 cut(s)	124, 752, 990, 993, 1012, 1246
BseYI	CCCAGC	1 cut(s)	1139
BsgI	GTGCAG	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	1157
BslFI	GGGAC	2 cut(s)	674, 979
BslI	CCNNNNNNNGG	1 cut(s)	1089
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	2 cut(s)	674, 979
BsmI	GAATGC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	1157
Bsp143I	GATC	3 cut(s)	703, 826, 1248
BspCNI	CTCAG	1 cut(s)	1072
BspLI	GGNNCC	1 cut(s)	569
BspOI	GCTAGC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	269, 382
BssECI	CCNNGG	1 cut(s)	842
BssMI	GATC	3 cut(s)	703, 826, 1248
BssNI	GRCGYC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	726, 1242
Bst4CI	ACNGT	3 cut(s)	239, 274, 613
BstACI	GRCGYC	1 cut(s)	561
BstC8I	GCNNGC	4 cut(s)	43, 106, 342, 1107
BstDEI	CTNAG	6 cut(s)	27, 95, 285, 345, 453, 1059
BstF5I	GGATG	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	3 cut(s)	706, 829, 1251
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	3 cut(s)	703, 826, 1248
BstNI	CCWGG	2 cut(s)	726, 1242
BstPAI	GACNNNNGTC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	724, 1240
BstSFI	CTRYAG	1 cut(s)	634
BstV1I	GCAGC	6 cut(s)	124, 752, 990, 993, 1012, 1246
BsuI	GTATCC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	662
Cac8I	GCNNGC	4 cut(s)	43, 106, 342, 1107
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	468, 1245
CviAII	CATG	5 cut(s)	178, 488, 908, 956, 1084
CviQI	GTAC	2 cut(s)	468, 1245
DdeI	CTNAG	6 cut(s)	27, 95, 285, 345, 453, 1059
DpnI	GATC	3 cut(s)	705, 828, 1250
DpnII	GATC	3 cut(s)	703, 826, 1248
DraI	TTTAAA	1 cut(s)	1012
Eco130I	CCWWGG	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	1042
EcoRII	CCWGG	2 cut(s)	724, 1240
EcoT14I	CCWWGG	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	5 cut(s)	181, 491, 911, 959, 1087
FaqI	GGGAC	2 cut(s)	674, 979
FatI	CATG	5 cut(s)	177, 487, 907, 955, 1083
FauNDI	CATATG	2 cut(s)	1172, 1184
FbaI	TGATCA	2 cut(s)	703, 826
Fnu4HI	GCNGC	6 cut(s)	138, 766, 979, 982, 1026, 1260
FokI	GGATG	1 cut(s)	669
Fsp4HI	GCNGC	6 cut(s)	138, 766, 979, 982, 1026, 1260
FspBI	CTAG	3 cut(s)	42, 168, 465
FspI	TGCGCA	1 cut(s)	716
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	6 cut(s)	138, 766, 979, 982, 1026, 1260
GsaI	CCCAGC	1 cut(s)	1143
HhaI	GCGC	1 cut(s)	717
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	5 cut(s)	181, 491, 911, 959, 1087
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	6 cut(s)	289, 328, 605, 946, 992, 1144
HpaI	GTTAAC	1 cut(s)	496
HphI	GGTGA	5 cut(s)	239, 271, 542, 913, 943
Hpy166II	GTNNAC	4 cut(s)	33, 262, 496, 914
Hpy188I	TCNGA	3 cut(s)	322, 414, 1268
Hpy188III	TCNNGA	2 cut(s)	310, 883
Hpy8I	GTNNAC	4 cut(s)	33, 262, 496, 914
HpyAV	CCTTC	1 cut(s)	1088
HpyCH4III	ACNGT	3 cut(s)	239, 274, 613
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	7 cut(s)	87, 160, 768, 865, 978, 1105, 1122
HpyF3I	CTNAG	6 cut(s)	27, 95, 285, 345, 453, 1059
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	181, 491, 911, 959, 1087
HspAI	GCGC	1 cut(s)	715
Ksp22I	TGATCA	2 cut(s)	703, 826
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	703, 826, 1248
Lsp1109I	GCAGC	6 cut(s)	124, 752, 990, 993, 1012, 1246
LweI	GCATC	2 cut(s)	54, 1213
MaeI	CTAG	3 cut(s)	42, 168, 465
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	22, 130, 833
MalI	GATC	3 cut(s)	705, 828, 1250
MboI	GATC	3 cut(s)	703, 826, 1248
MboII	GAAGA	3 cut(s)	309, 476, 1106
MhlI	GDGCHC	1 cut(s)	1157
MlyI	GAGTC	1 cut(s)	1001
MmeI	TCCRAC	2 cut(s)	59, 335
MroXI	GAANNNNTTC	1 cut(s)	1046
MslI	CAYNNNNRTG	2 cut(s)	18, 892
MspR9I	CCNGG	2 cut(s)	726, 1242
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	2 cut(s)	726, 1242
NdeI	CATATG	2 cut(s)	1172, 1184
NdeII	GATC	3 cut(s)	703, 826, 1248
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	181, 491, 911, 959, 1087
NlaIV	GGNNCC	1 cut(s)	569
NsbI	TGCGCA	1 cut(s)	716
PctI	GAATGC	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	1046
PfeI	GAWTC	5 cut(s)	289, 328, 605, 946, 1144
PflMI	CCANNNNNTGG	1 cut(s)	1089
PkrI	GCNGC	6 cut(s)	139, 767, 980, 983, 1027, 1261
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
PshAI	GACNNNNGTC	1 cut(s)	560
PshBI	ATTAAT	2 cut(s)	588, 621
Psp6I	CCWGG	2 cut(s)	724, 1240
PspFI	CCCAGC	1 cut(s)	1139
PspGI	CCWGG	2 cut(s)	724, 1240
PspN4I	GGNNCC	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	469, 1246
RsaNI	GTAC	2 cut(s)	468, 1245
RseI	CAYNNNNRTG	2 cut(s)	18, 892
SatI	GCNGC	6 cut(s)	138, 766, 979, 982, 1026, 1260
Sau3AI	GATC	3 cut(s)	703, 826, 1248
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	2 cut(s)	726, 1242
SduI	GDGCHC	1 cut(s)	1157
SfaNI	GCATC	2 cut(s)	54, 1213
SfcI	CTRYAG	1 cut(s)	634
SmiMI	CAYNNNNRTG	2 cut(s)	18, 892
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SspI	AATATT	2 cut(s)	619, 808
SspMI	CTAG	3 cut(s)	42, 168, 465
StyD4I	CCNGG	2 cut(s)	724, 1240
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	3 cut(s)	239, 274, 613
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	67
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	5 cut(s)	289, 328, 605, 946, 1144
TseI	GCWGC	6 cut(s)	137, 765, 978, 981, 1025, 1259
TspDTI	ATGAA	7 cut(s)	113, 242, 341, 476, 771, 1159, 1171
Van91I	CCANNNNNTGG	1 cut(s)	1089
VspI	ATTAAT	2 cut(s)	588, 621
XapI	RAATTY	7 cut(s)	249, 667, 708, 756, 848, 867, 1042
XmnI	GAANNNNTTC	1 cut(s)	1046
XspI	CTAG	3 cut(s)	42, 168, 465
ZraI	GACGTC	1 cut(s)	562
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.