Rmu_sc0010883.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010883.1
OG0001772
Physical Location & Seq
Forward (+)
25589 .. 26221
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010883.1_g000006.1.cds

Sequence Viewer

Length: 633 bp
atgcttgctaagattggttggaggatgactcaaggtgatgggagtttgtggagcaaggttcttcatcaaaagtacgtcaaagacactcctcttttccatgctaattattcttgtccttctaggagctctagcacttggagaagtattctccatggtgttcaattgttaaagaaagggttaatctggcgaattggtgatggggctactggtaattttttgaatgacatttggacatttgatggacctttgcttcaaaacattgctgatacgactaatgtcaatctagacaccaaagttaatgagtgttggagcgatagggaatggaatttgaactttctcaagatgcattttagtgatgatgttgttaatagaattgttaaaatacctgctggtttggagggttgtggtcctgataggataatttggaaaggtactagtaatggtcacttcactgtgagatctacttatcatattattttgaatgaagaacactttgaggagttcccttggtatttcctatggaaatttcctattcctcctaagttgaagactttcctttggctgctttgtcatggtaaggttctcactaatgttgaaagaagcaaaaggaggttgaccacaaactgttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

210

Amino Acids

24.45

Weight (kDa)

9.22

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AcsI RAATTY 2 cut(s) 325, 524
AfaI GTAC 2 cut(s) 74, 433
AgsI TTSAA 7 cut(s) 161, 220, 254, 331, 481, 547, 596
AhlI ACTAGT 1 cut(s) 434
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Alw21I GWGCWC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 325, 524
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 242, 407
AsuHPI GGTGA 2 cut(s) 47, 206
AvaII GGWCC 2 cut(s) 242, 407
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 549
BccI CCATC 3 cut(s) 32, 191, 233
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 4 cut(s) 120, 129, 284, 435
BfuAI ACCTGC 1 cut(s) 394
BglII AGATCT 1 cut(s) 458
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
Bme18I GGWCC 2 cut(s) 242, 407
BmgT120I GGNCC 2 cut(s) 242, 407
BmsI GCATC 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpuEI CTTGAG 2 cut(s) 15, 323
BsaJI CCNNGG 2 cut(s) 151, 506
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 151, 506
BseGI GGATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 78, 512
BseXI GCAGC 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 458
Bsp19I CCATGG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 151, 506
BssMI GATC 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 151, 506
Bst4CI ACNGT 2 cut(s) 454, 626
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 9, 540
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 461
BstMBI GATC 1 cut(s) 458
BstPAI GACNNNNGTC 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 549
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 242, 407
Csp6I GTAC 2 cut(s) 73, 432
CviAII CATG 3 cut(s) 98, 152, 572
CviJI RGCY 3 cut(s) 126, 203, 562
CviKI_1 RGCY 3 cut(s) 126, 203, 562
CviQI GTAC 2 cut(s) 73, 432
DdeI CTNAG 2 cut(s) 9, 540
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 151, 506
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 242, 407
Eco53kI GAGCTC 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 151, 506
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 2 cut(s) 151, 506
FaeI CATG 3 cut(s) 101, 155, 575
FaiI YATR 5 cut(s) 99, 153, 471, 520, 573
FatI CATG 3 cut(s) 97, 151, 571
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 563
FspBI CTAG 4 cut(s) 120, 129, 284, 435
GluI GCNGC 1 cut(s) 563
Hin1II CATG 3 cut(s) 101, 155, 575
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 1 cut(s) 28
HphI GGTGA 2 cut(s) 47, 206
Hpy166II GTNNAC 1 cut(s) 615
Hpy188III TCNNGA 3 cut(s) 284, 340, 410
Hpy8I GTNNAC 1 cut(s) 615
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 454, 626
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 9, 540
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 101, 155, 575
Kzo9I GATC 1 cut(s) 458
LmnI GCTCC 3 cut(s) 51, 123, 309
LpnPI CCDG 5 cut(s) 169, 192, 375, 399, 423
Lsp1109I GCAGC 1 cut(s) 549
LweI GCATC 1 cut(s) 333
MaeI CTAG 4 cut(s) 120, 129, 284, 435
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 443, 626
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MboII GAAGA 3 cut(s) 53, 497, 559
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 8 cut(s) 103, 161, 189, 211, 325, 372, 420, 524
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 6 cut(s) 15, 99, 391, 490, 546, 603
Mph1103I ATGCAT 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 5 cut(s) 167, 179, 297, 366, 378
MslI CAYNNNNRTG 1 cut(s) 351
MunI CAATTG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 458
NlaIII CATG 3 cut(s) 101, 155, 575
NmuCI GTSAC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 564
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 242, 407
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 74, 433
RsaNI GTAC 2 cut(s) 73, 432
RseI CAYNNNNRTG 1 cut(s) 351
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 167, 179, 297, 366, 378
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 1 cut(s) 458
Sau96I GGNCC 2 cut(s) 242, 407
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 1 cut(s) 128
SetI ASST 9 cut(s) 37, 60, 78, 128, 247, 388, 433, 582, 614
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 2 cut(s) 242, 407
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 30, 338
SmoI CTYRAG 2 cut(s) 30, 338
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 8 cut(s) 103, 161, 189, 211, 325, 372, 420, 524
SspMI CTAG 4 cut(s) 120, 129, 284, 435
SstI GAGCTC 1 cut(s) 128
StyI CCWWGG 2 cut(s) 151, 506
TaaI ACNGT 2 cut(s) 454, 626
TaiI ACGT 1 cut(s) 78
TasI AATT 8 cut(s) 103, 161, 189, 211, 325, 372, 420, 524
Tru1I TTAA 5 cut(s) 167, 179, 297, 366, 378
Tru9I TTAA 5 cut(s) 167, 179, 297, 366, 378
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 53, 498
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 242, 407
XapI RAATTY 2 cut(s) 325, 524
XbaI TCTAGA 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 4 cut(s) 120, 129, 284, 435
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.