Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004569.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

40812 .. 47815

Gene Structure 7004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004569.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

atgcctcagtggcaacttcgagctttcacgctctcgcctcagcgccaacctcgagcttcccgctcaagccttcgcggcatccccgagcttcccactcacgagcttccgctcaagccttcgcggcaccccctagcttctcgctcaagagcttccgctcatgcctttgcggcacccccgagcttcccgctcacgccttcccggcaaccccagagcttcccgccttcgcggcaaccccgagcttccgctcacgccttcccggcaaccccagagcttcccgccttcgcggcaaccccgagcttccgctcacgccttcgcggcaccctcaagcttctcgctcacgagcttccgctcaatccttcaggcaacccccgagcttcctgctcactagcttccgctcacgccttcacggcaaccccagagcttccctctctctttcgcggcaaccccgagcttcccgctctcgccttcgcggcaaccccgagcttcccgctcacgccttcccaggcaaccctcgagcttcccgctcatgcctacccggcaacccccgagcttcccgttcaagccttcccagcacccctaagctttcacgctcttgccttccgacattcccaacctttacactcacatccactcgacatcatacacataaatggaacattgaatttttctaccattagtcactcgcgaaaaatcgaattcttttcaggttccattaatacgagcgacaaccaaacaaacacaagtgttcgcgtattcatgattcacgaattacatacacttgccttcatggcactcatgcaacttacaccaagcgtaacctcgtcaaactcgacctcgttcgttttctggcgcgcatcacgcatttatcatatgcaatccactacgcgcttcacgcgcggcgaattttctctcctcttcacctcgttcgtagctactgcacaaccaccatcaccgacgttgatttcaccgccgattgagcactccgctccttctcttgtgacggcgtcctctcctgttttcaccttctccaccctcccgacggggagtggcggagatgaccctatttctgcaaatcaaaacaagcgattccgagcaaatgatgttctctgcgataaactcatggcagcacaaaccaccgatgccgaacctgcctctcctttacctggtcattctcttgattcgactagctatgcggctcgtctcctcaaccccctcagtcactatggcaaagctgcaattgaagattttgtgatgactgatgaggactacactatcactgaaggtacgattgctccgaatgtctgtttttctcaacgagtcaatgataaactagatatcgagtggcgttgtgctgttgttgtgaaattgatgggaaagcctaatgtcaagaatgcttatacgtttatgcatagtggtctcaaacgaaaatggaaccttcaaggcccttggcagctgatcgacttacccaatgacttctacatagttaaatttactctggaatctgatcttaatgttgccctatgtggaggtccttggattctggctggacaaaccttggttgttcaaaaatggcgtcccgattttgatcccaataatgaaaaaataaacaatatggttgtatgggtgagaattttgggtgtacctgttagatatttcaaggattatacacttaaggtggtgggtaaagttctgggcattgttatcctccttaaacataagttatgcttttattgtggttatcttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

582

Amino Acids

64.21

Weight (kDa)

9.51

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1156
AccB1I	GGYRCC	3 cut(s)	123, 169, 317
AclWI	GGATC	1 cut(s)	1580
AcsI	RAATTY	5 cut(s)	661, 695, 902, 1487, 1629
AcuI	CTGAAG	2 cut(s)	342, 1299
AcyI	GRCGYC	2 cut(s)	1004, 1573
AfaI	GTAC	2 cut(s)	1285, 1641
AfiI	CCNNNNNNNGG	2 cut(s)	1039, 1163
AflII	CTTAAG	1 cut(s)	1670
AgsI	TTSAA	6 cut(s)	560, 661, 1241, 1439, 1565, 1657
AjnI	CCWGG	2 cut(s)	501, 1162
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	1205, 1421
AlwI	GGATC	1 cut(s)	1580
AoxI	GGCC	1 cut(s)	1441
ApeKI	GCWGC	3 cut(s)	1124, 1232, 1450
ApoI	RAATTY	5 cut(s)	661, 695, 902, 1487, 1629
ArsI	GACNNNNNNTTYG	2 cut(s)	1558, 1590
AseI	ATTAAT	1 cut(s)	714
AspLEI	GCGC	5 cut(s)	45, 852, 854, 888, 897
AspS9I	GGNCC	2 cut(s)	1442, 1529
AsuC2I	CCSGG	3 cut(s)	199, 257, 536
AsuHPI	GGTGA	5 cut(s)	910, 942, 957, 1012, 1636
AvaII	GGWCC	1 cut(s)	1529
BanI	GGYRCC	3 cut(s)	123, 169, 317
BauI	CACGAG	2 cut(s)	98, 338
Bbv12I	GWGCWC	1 cut(s)	981
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	1136, 1219, 1462
BccI	CCATC	2 cut(s)	955, 1363
BceAI	ACGGC	2 cut(s)	423, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	2 cut(s)	503, 1164
BcnI	CCSGG	3 cut(s)	199, 257, 536
BcoDI	GTCTC	2 cut(s)	1205, 1421
BfaI	CTAG	4 cut(s)	131, 386, 1185, 1331
BfoI	RGCGCY	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	1670
BfuAI	ACCTGC	1 cut(s)	1156
Bme1390I	CCNGG	5 cut(s)	199, 257, 503, 536, 1164
Bme18I	GGWCC	1 cut(s)	1529
BmgT120I	GGNCC	2 cut(s)	1442, 1529
BmiI	GGNNCC	5 cut(s)	125, 171, 319, 709, 1433
BmrFI	CCNGG	5 cut(s)	199, 257, 503, 536, 1164
BmsI	GCATC	3 cut(s)	87, 863, 1129
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu10I	CCTNAGC	2 cut(s)	39, 578
BpuEI	CTTGAG	4 cut(s)	49, 95, 127, 308
BpuMI	CCSGG	3 cut(s)	199, 257, 536
BsaBI	GATNNNNATC	1 cut(s)	1584
BsaHI	GRCGYC	2 cut(s)	1004, 1573
BsaI	GGTCTC	1 cut(s)	1421
BsaJI	CCNNGG	4 cut(s)	501, 1445, 1532, 1554
BsaXI	ACNNNNNCTCC	2 cut(s)	1276, 1306
Bsc4I	CCNNNNNNNGG	2 cut(s)	1039, 1163
Bse8I	GATNNNNATC	1 cut(s)	1584
BseBI	CCWGG	2 cut(s)	503, 1164
BseDI	CCNNGG	4 cut(s)	501, 1445, 1532, 1554
BseGI	GGATG	2 cut(s)	78, 625
BseJI	GATNNNNATC	1 cut(s)	1584
BseLI	CCNNNNNNNGG	2 cut(s)	1039, 1163
BseMII	CTCAG	3 cut(s)	20, 53, 1228
BsePI	GCGCGC	1 cut(s)	850
BseRI	GAGGAG	2 cut(s)	902, 1193
BseXI	GCAGC	3 cut(s)	1136, 1219, 1462
BseYI	CCCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	1443
BshNI	GGYRCC	3 cut(s)	123, 169, 317
BsiHKAI	GWGCWC	1 cut(s)	981
BsiSI	CCGG	3 cut(s)	199, 257, 536
BslFI	GGGAC	1 cut(s)	1560
BslI	CCNNNNNNNGG	2 cut(s)	1039, 1163
BsmAI	GTCTC	2 cut(s)	1205, 1421
BsmBI	CGTCTC	1 cut(s)	1205
BsmFI	GGGAC	1 cut(s)	1560
BsmI	GAATGC	1 cut(s)	1396
BsnI	GGCC	1 cut(s)	1443
Bso31I	GGTCTC	1 cut(s)	1421
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	3 cut(s)	1455, 1504, 1585
Bsp68I	TCGCGA	1 cut(s)	685
BspANI	GGCC	1 cut(s)	1443
BspCNI	CTCAG	3 cut(s)	19, 52, 1227
BspHI	TCATGA	1 cut(s)	756
BspLI	GGNNCC	5 cut(s)	125, 171, 319, 709, 1433
BspMI	ACCTGC	1 cut(s)	1156
BspPI	GGATC	1 cut(s)	1580
BspT107I	GGYRCC	3 cut(s)	123, 169, 317
BspTI	CTTAAG	1 cut(s)	1670
BspTNI	GGTCTC	1 cut(s)	1421
BssECI	CCNNGG	4 cut(s)	501, 1445, 1532, 1554
BssHII	GCGCGC	1 cut(s)	850
BssMI	GATC	3 cut(s)	1455, 1504, 1585
BssNI	GRCGYC	2 cut(s)	1004, 1573
BssSI	CACGAG	2 cut(s)	98, 338
BssT1I	CCWWGG	3 cut(s)	1445, 1532, 1554
Bst2BI	CACGAG	2 cut(s)	98, 338
Bst2UI	CCWGG	2 cut(s)	503, 1164
Bst6I	CTCTTC	1 cut(s)	920
BstACI	GRCGYC	2 cut(s)	1004, 1573
BstAFI	CTTAAG	1 cut(s)	1670
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	4 cut(s)	6, 39, 578, 1214
BstF5I	GGATG	2 cut(s)	78, 625
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	5 cut(s)	45, 852, 854, 888, 897
BstKTI	GATC	3 cut(s)	1458, 1507, 1588
BstMAI	GTCTC	2 cut(s)	1205, 1421
BstMBI	GATC	3 cut(s)	1455, 1504, 1585
BstNI	CCWGG	2 cut(s)	503, 1164
BstSCI	CCNGG	5 cut(s)	197, 255, 501, 534, 1162
BstV1I	GCAGC	3 cut(s)	1136, 1219, 1462
BsuRI	GGCC	1 cut(s)	1443
BtsCI	GGATG	2 cut(s)	78, 625
BtsIMutI	CAGTG	2 cut(s)	14, 1275
BtuMI	TCGCGA	1 cut(s)	685
BveI	ACCTGC	1 cut(s)	1156
Cac8I	GCNNGC	1 cut(s)	852
CciI	TCATGA	1 cut(s)	756
CfoI	GCGC	5 cut(s)	45, 852, 854, 888, 897
Cfr13I	GGNCC	2 cut(s)	1442, 1529
CseI	GACGC	2 cut(s)	993, 1562
CsiI	ACCWGGT	1 cut(s)	1162
Csp6I	GTAC	2 cut(s)	1284, 1640
CviAII	CATG	6 cut(s)	158, 527, 757, 787, 796, 1120
CviQI	GTAC	2 cut(s)	1284, 1640
DdeI	CTNAG	4 cut(s)	6, 39, 578, 1214
DpnI	GATC	3 cut(s)	1457, 1506, 1587
DpnII	GATC	3 cut(s)	1455, 1504, 1585
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
EciI	GGCGGA	1 cut(s)	1065
Eco130I	CCWWGG	3 cut(s)	1445, 1532, 1554
Eco31I	GGTCTC	1 cut(s)	1421
Eco32I	GATATC	1 cut(s)	1336
Eco47I	GGWCC	1 cut(s)	1529
Eco57I	CTGAAG	2 cut(s)	342, 1299
EcoO109I	RGGNCCY	2 cut(s)	1442, 1529
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	501, 1162
EcoRV	GATATC	1 cut(s)	1336
EcoT14I	CCWWGG	3 cut(s)	1445, 1532, 1554
EcoT22I	ATGCAT	1 cut(s)	1410
ErhI	CCWWGG	3 cut(s)	1445, 1532, 1554
Esp3I	CGTCTC	1 cut(s)	1205
FaeI	CATG	6 cut(s)	161, 530, 760, 790, 799, 1123
FalI	AAGNNNNNCTT	2 cut(s)	1709, 1741
FaqI	GGGAC	1 cut(s)	1560
FatI	CATG	6 cut(s)	157, 526, 756, 786, 795, 1119
FauI	CCCGC	7 cut(s)	68, 192, 225, 283, 463, 495, 529
FauNDI	CATATG	1 cut(s)	870
FokI	GGATG	2 cut(s)	65, 612
FspBI	CTAG	4 cut(s)	131, 386, 1185, 1331
GlaI	GCGC	5 cut(s)	44, 851, 853, 887, 896
GsaI	CCCAGC	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	1443
HapII	CCGG	3 cut(s)	199, 257, 536
HgaI	GACGC	2 cut(s)	993, 1562
HhaI	GCGC	5 cut(s)	45, 852, 854, 888, 897
Hin1I	GRCGYC	2 cut(s)	1004, 1573
Hin1II	CATG	6 cut(s)	161, 530, 760, 790, 799, 1123
Hin6I	GCGC	5 cut(s)	43, 850, 852, 886, 895
HinP1I	GCGC	5 cut(s)	43, 850, 852, 886, 895
HindIII	AAGCTT	2 cut(s)	326, 580
HinfI	GANTC	6 cut(s)	760, 1086, 1178, 1317, 1499, 1537
HpaII	CCGG	3 cut(s)	199, 257, 536
HphI	GGTGA	5 cut(s)	910, 942, 957, 1012, 1636
Hpy166II	GTNNAC	1 cut(s)	1640
Hpy188I	TCNGA	4 cut(s)	602, 1091, 1296, 1504
Hpy8I	GTNNAC	1 cut(s)	1640
Hpy99I	CGWCG	2 cut(s)	958, 1042
HpyCH4IV	ACGT	2 cut(s)	956, 1400
HpyCH4V	TGCA	6 cut(s)	799, 874, 938, 1070, 1235, 1408
HpyF3I	CTNAG	4 cut(s)	6, 39, 578, 1214
HpySE526I	ACGT	2 cut(s)	956, 1400
Hsp92I	GRCGYC	2 cut(s)	1004, 1573
Hsp92II	CATG	6 cut(s)	161, 530, 760, 790, 799, 1123
HspAI	GCGC	5 cut(s)	43, 850, 852, 886, 895
Kzo9I	GATC	3 cut(s)	1455, 1504, 1585
LmnI	GCTCC	2 cut(s)	991, 1297
Lsp1109I	GCAGC	3 cut(s)	1136, 1219, 1462
LweI	GCATC	3 cut(s)	87, 863, 1129
MabI	ACCWGGT	1 cut(s)	1162
MaeI	CTAG	4 cut(s)	131, 386, 1185, 1331
MaeII	ACGT	2 cut(s)	956, 1400
MaeIII	GTNAC	4 cut(s)	677, 814, 997, 1217
MalI	GATC	3 cut(s)	1457, 1506, 1587
MboI	GATC	3 cut(s)	1455, 1504, 1585
MboII	GAAGA	3 cut(s)	907, 1253, 1733
MfeI	CAATTG	1 cut(s)	1236
MhlI	GDGCHC	1 cut(s)	981
MluCI	AATT	8 cut(s)	661, 695, 767, 902, 1236, 1364, 1487, 1629
MlyI	GAGTC	1 cut(s)	1326
MmeI	TCCRAC	1 cut(s)	625
Mph1103I	ATGCAT	1 cut(s)	1410
MseI	TTAA	5 cut(s)	714, 1485, 1509, 1671, 1710
MslI	CAYNNNNRTG	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	1453
MspCI	CTTAAG	1 cut(s)	1670
MspI	CCGG	3 cut(s)	199, 257, 536
MspR9I	CCNGG	5 cut(s)	199, 257, 503, 536, 1164
MunI	CAATTG	1 cut(s)	1236
Mva1269I	GAATGC	1 cut(s)	1396
MvaI	CCWGG	2 cut(s)	503, 1164
NciI	CCSGG	3 cut(s)	199, 257, 536
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	3 cut(s)	1455, 1504, 1585
NlaIII	CATG	6 cut(s)	161, 530, 760, 790, 799, 1123
NlaIV	GGNNCC	5 cut(s)	125, 171, 319, 709, 1433
NmuCI	GTSAC	3 cut(s)	677, 997, 1217
NruI	TCGCGA	1 cut(s)	685
NsiI	ATGCAT	1 cut(s)	1410
PaeR7I	CTCGAG	2 cut(s)	51, 512
PagI	TCATGA	1 cut(s)	756
PauI	GCGCGC	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	2 cut(s)	827, 1292
PctI	GAATGC	1 cut(s)	1396
PfeI	GAWTC	5 cut(s)	760, 1086, 1178, 1499, 1537
PflFI	GACNNNGTC	1 cut(s)	1003
PleI	GAGTC	1 cut(s)	1325
PpsI	GAGTC	1 cut(s)	1325
PpuMI	RGGWCCY	1 cut(s)	1529
PshBI	ATTAAT	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	1529
Psp6I	CCWGG	2 cut(s)	501, 1162
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	501, 1162
PspN4I	GGNNCC	5 cut(s)	125, 171, 319, 709, 1433
PspPI	GGNCC	2 cut(s)	1442, 1529
PspPPI	RGGWCCY	1 cut(s)	1529
PspXI	VCTCGAGB	2 cut(s)	51, 512
PsyI	GACNNNGTC	1 cut(s)	1003
PteI	GCGCGC	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	1453
RruI	TCGCGA	1 cut(s)	685
RsaI	GTAC	2 cut(s)	1285, 1641
RsaNI	GTAC	2 cut(s)	1284, 1640
RseI	CAYNNNNRTG	1 cut(s)	648
SaqAI	TTAA	5 cut(s)	714, 1485, 1509, 1671, 1710
Sau3AI	GATC	3 cut(s)	1455, 1504, 1585
Sau96I	GGNCC	2 cut(s)	1442, 1529
SchI	GAGTC	1 cut(s)	1326
ScrFI	CCNGG	5 cut(s)	199, 257, 503, 536, 1164
SduI	GDGCHC	1 cut(s)	981
SexAI	ACCWGGT	1 cut(s)	1162
SfaNI	GCATC	3 cut(s)	87, 863, 1129
Sfr274I	CTCGAG	2 cut(s)	51, 512
SinI	GGWCC	1 cut(s)	1529
SlaI	CTCGAG	2 cut(s)	51, 512
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	7 cut(s)	51, 64, 110, 142, 323, 512, 1670
SmoI	CTYRAG	7 cut(s)	51, 64, 110, 142, 323, 512, 1670
Sse9I	AATT	8 cut(s)	661, 695, 767, 902, 1236, 1364, 1487, 1629
SspMI	CTAG	4 cut(s)	131, 386, 1185, 1331
StyD4I	CCNGG	5 cut(s)	197, 255, 501, 534, 1162
StyI	CCWWGG	3 cut(s)	1445, 1532, 1554
TaiI	ACGT	2 cut(s)	959, 1403
TaqI	TCGA	9 cut(s)	19, 52, 513, 633, 693, 830, 1181, 1338, 1458
TasI	AATT	8 cut(s)	661, 695, 767, 902, 1236, 1364, 1487, 1629
TfiI	GAWTC	5 cut(s)	760, 1086, 1178, 1499, 1537
Tru1I	TTAA	5 cut(s)	714, 1485, 1509, 1671, 1710
Tru9I	TTAA	5 cut(s)	714, 1485, 1509, 1671, 1710
TscAI	CASTG	2 cut(s)	14, 1282
TseFI	GTSAC	3 cut(s)	677, 997, 1217
TseI	GCWGC	3 cut(s)	1124, 1232, 1450
Tsp45I	GTSAC	3 cut(s)	677, 997, 1217
TspDTI	ATGAA	3 cut(s)	745, 775, 1611
TspRI	CASTG	2 cut(s)	14, 1282
Tth111I	GACNNNGTC	1 cut(s)	1003
Vha464I	CTTAAG	1 cut(s)	1670
VpaK11BI	GGWCC	1 cut(s)	1529
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	5 cut(s)	661, 695, 902, 1487, 1629
XhoI	CTCGAG	2 cut(s)	51, 512
XspI	CTAG	4 cut(s)	131, 386, 1185, 1331
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.