Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002354.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

216644 .. 217700

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002354.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggtttactacactcctaacattggtaatgcagctgcttctgctattagtaaaatctgtggatctcccctaactgatgaccttggggtgtaccttggtatgcctttgattcatgcaagggtcagtaagaatacttacacagggattgttgataaggtccagtctagattggctagctggaagagcaagaccttgaacatggctggtcggttaactcttatccagtctgttaactcttcaattttggtctatgctatgcaaactgcaaagctccgtactcaaacctgtgacaaattggataagattaatcgagatttcttctggggagacactgagcagaaaaggaagattcacctcacaaatagggatatggtgtgtaggcctaagtgctttggtgggctggaaataaagaagaataaggccatgcttgcaaaagccagctggagaattattcagaatgatcaaggattatggagcaaaggcctaaattggaggattggtgatggggctaaggcaaaattctggactgataagtggttcccatgtggtattcttaaagaccatgctttaaatgttggaagcattgatttaagctctactgtccagaacttttggattgataggaattggaacttatctatgttacaagctaaccttcatgctgaaatcgttgataaaattgttgctatccctatagctaactctgagttgcctgatcaagttatttggggtggtacttcatcagggattttctctgttaaatctgcctataggattctttgtgatgagcagggacttcatagctatagttggttgaggaattggtatcttcctatccctcccaagctcaaaatctttctttggtcctttgttccaagcaagctgctaactaatgagcagcgctttagacgaaaactcacttccaatccctcctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

312

Amino Acids

35.39

Weight (kDa)

9.74

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	3 cut(s)	92, 277, 736
AfeI	AGCGCT	1 cut(s)	902
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	196, 240
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	902
AoxI	GGCC	3 cut(s)	380, 420, 481
ApeKI	GCWGC	4 cut(s)	32, 35, 883, 898
ApoI	RAATTY	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	157, 864
AsuHPI	GGTGA	2 cut(s)	344, 512
AsuNHI	GCTAGC	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	157, 864
BbvI	GCAGC	4 cut(s)	22, 44, 870, 910
BccI	CCATC	1 cut(s)	497
BclI	TGATCA	2 cut(s)	460, 715
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	3 cut(s)	165, 174, 937
BfmI	CTRYAG	3 cut(s)	693, 769, 805
BfoI	RGCGCY	1 cut(s)	904
BisI	GCNGC	4 cut(s)	33, 36, 884, 899
BlsI	GCNGC	4 cut(s)	34, 37, 885, 900
Bme18I	GGWCC	2 cut(s)	157, 864
BmgT120I	GGNCC	2 cut(s)	157, 864
BmiI	GGNNCC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	82, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	160, 223
BseDI	CCNNGG	2 cut(s)	82, 94
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	324, 696
BseNI	ACTGG	2 cut(s)	160, 223
BseXI	GCAGC	4 cut(s)	22, 44, 870, 910
BshFI	GGCC	3 cut(s)	382, 422, 483
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	382, 422, 483
Bsp143I	GATC	3 cut(s)	62, 460, 715
BspANI	GGCC	3 cut(s)	382, 422, 483
BspCNI	CTCAG	2 cut(s)	325, 697
BspLI	GGNNCC	1 cut(s)	539
BspOI	GCTAGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	160, 223
BssECI	CCNNGG	2 cut(s)	82, 94
BssMI	GATC	3 cut(s)	62, 460, 715
BssT1I	CCWWGG	2 cut(s)	82, 94
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	2 cut(s)	176, 241
BstC8I	GCNNGC	4 cut(s)	175, 429, 439, 881
BstDEI	CTNAG	4 cut(s)	333, 384, 510, 705
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	3 cut(s)	65, 463, 718
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	62, 460, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 183, 428
BstSFI	CTRYAG	3 cut(s)	693, 769, 805
BstV1I	GCAGC	4 cut(s)	22, 44, 870, 910
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	382, 422, 483
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	175, 429, 439, 881
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	157, 864
Csp6I	GTAC	3 cut(s)	91, 276, 735
CviAII	CATG	6 cut(s)	113, 199, 424, 543, 563, 659
CviQI	GTAC	3 cut(s)	91, 276, 735
DdeI	CTNAG	4 cut(s)	333, 384, 510, 705
DpnI	GATC	3 cut(s)	64, 462, 717
DpnII	GATC	3 cut(s)	62, 460, 715
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	176, 241
EarI	CTCTTC	2 cut(s)	176, 241
Eco130I	CCWWGG	2 cut(s)	82, 94
Eco147I	AGGCCT	2 cut(s)	382, 483
Eco47I	GGWCC	2 cut(s)	157, 864
Eco47III	AGCGCT	1 cut(s)	902
EcoT14I	CCWWGG	2 cut(s)	82, 94
ErhI	CCWWGG	2 cut(s)	82, 94
FaeI	CATG	6 cut(s)	116, 202, 427, 546, 566, 662
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	6 cut(s)	112, 198, 423, 542, 562, 658
FbaI	TGATCA	2 cut(s)	460, 715
Fnu4HI	GCNGC	4 cut(s)	33, 36, 884, 899
Fsp4HI	GCNGC	4 cut(s)	33, 36, 884, 899
FspBI	CTAG	3 cut(s)	165, 174, 937
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	4 cut(s)	33, 36, 884, 899
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	3 cut(s)	382, 422, 483
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	6 cut(s)	116, 202, 427, 546, 566, 662
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	2 cut(s)	213, 232
HindII	GTYRAC	2 cut(s)	213, 232
HinfI	GANTC	3 cut(s)	109, 349, 775
HpaI	GTTAAC	2 cut(s)	213, 232
HphI	GGTGA	2 cut(s)	344, 512
Hpy166II	GTNNAC	4 cut(s)	7, 91, 213, 232
Hpy188I	TCNGA	2 cut(s)	456, 706
Hpy188III	TCNNGA	4 cut(s)	165, 311, 523, 604
Hpy8I	GTNNAC	4 cut(s)	7, 91, 213, 232
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	32, 116, 259, 266, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 183, 428
HpyF3I	CTNAG	4 cut(s)	333, 384, 510, 705
Hsp92II	CATG	6 cut(s)	116, 202, 427, 546, 566, 662
HspAI	GCGC	1 cut(s)	901
Ksp22I	TGATCA	2 cut(s)	460, 715
KspAI	GTTAAC	2 cut(s)	213, 232
Kzo9I	GATC	3 cut(s)	62, 460, 715
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	276, 474
Lsp1109I	GCAGC	4 cut(s)	22, 44, 870, 910
MaeI	CTAG	3 cut(s)	165, 174, 937
MaeIII	GTNAC	2 cut(s)	287, 642
MalI	GATC	3 cut(s)	64, 462, 717
MboI	GATC	3 cut(s)	62, 460, 715
MboII	GAAGA	6 cut(s)	193, 228, 310, 358, 424, 821
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	8 cut(s)	240, 293, 447, 487, 518, 625, 678, 820
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	4 cut(s)	365, 486, 810, 849
MseI	TTAA	7 cut(s)	212, 231, 306, 555, 569, 590, 759
MspA1I	CMGCKG	2 cut(s)	35, 441
MwoI	GCNNNNNNNGC	3 cut(s)	41, 183, 428
NdeII	GATC	3 cut(s)	62, 460, 715
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	6 cut(s)	116, 202, 427, 546, 566, 662
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	287
PceI	AGGCCT	2 cut(s)	382, 483
PciSI	GCTCTTC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	109, 349, 775
PkrI	GCNGC	4 cut(s)	34, 37, 885, 900
PshBI	ATTAAT	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	157, 864
PsuI	RGATCY	1 cut(s)	62
PvuII	CAGCTG	2 cut(s)	35, 441
RsaI	GTAC	3 cut(s)	92, 277, 736
RsaNI	GTAC	3 cut(s)	91, 276, 735
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	7 cut(s)	212, 231, 306, 555, 569, 590, 759
SatI	GCNGC	4 cut(s)	33, 36, 884, 899
Sau3AI	GATC	3 cut(s)	62, 460, 715
Sau96I	GGNCC	2 cut(s)	157, 864
SfcI	CTRYAG	3 cut(s)	693, 769, 805
SinI	GGWCC	2 cut(s)	157, 864
Sse9I	AATT	8 cut(s)	240, 293, 447, 487, 518, 625, 678, 820
SseBI	AGGCCT	2 cut(s)	382, 483
SspMI	CTAG	3 cut(s)	165, 174, 937
StuI	AGGCCT	2 cut(s)	382, 483
StyI	CCWWGG	2 cut(s)	82, 94
TaaI	ACNGT	1 cut(s)	601
TaqI	TCGA	1 cut(s)	310
TasI	AATT	8 cut(s)	240, 293, 447, 487, 518, 625, 678, 820
TfiI	GAWTC	3 cut(s)	109, 349, 775
Tru1I	TTAA	7 cut(s)	212, 231, 306, 555, 569, 590, 759
Tru9I	TTAA	7 cut(s)	212, 231, 306, 555, 569, 590, 759
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	32, 35, 883, 898
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	101, 647, 729, 788
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	157, 864
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	164
XspI	CTAG	3 cut(s)	165, 174, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.