Rorug07G0277300

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001772
Physical Location & Seq
Reverse (-)
26540278 .. 26541658
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0277300.1

Sequence Viewer

Length: 720 bp
ATGAAATCCCATTCCCCCATCTTCTGTTTGATACTCTGTGCTCTCATAAGCCTGTCAACAACTATTCTAACCGCTCAGGAAAATCCTGTTTCCTTCTACATTGCTTATCAGTGGCCAGGCTCATACTGTGCAGCAGCAAAGCAGGGTTGTTGCTACCCAAAGAGTATTAGAAAACATCCCAGTTTCACAATTGGTGGCATATGGCCTTATACTTTTTCTGGGGATAGACCAACCTACTGCAAATCTAAGACCCCTTATAGTTTATCTAAGATCTCAAACCTGACCAAGAGTTTGGAAAGGAATTGGCCATCACTATCCTGCCCAAGCCGTACTAGTAGCATTAGCAGTAAGAAACTATGGATGCAAGAATGGCAGAAATATGGGACTTGTGCAGAATCACTCTTTGGAGGTCAATATCAATACTTTCATGCAGGTCTCAATCTCAGGAAGAAAATAGACATGCTCCAGATACTCAGCAATGCAGAAATCCATCCAAATGGGTCATTTTATGAGATGACTGCAGTTTTCAATGCCATACAAAAGGCCACCATCTATCTTCCGGGGCTTATCTGTAACAAAGACAAATCAGGCAACAAACAGCTCTACCAGATTATACTCTGTGGAAACACCGCCGGAACCAGAATCACAGACTGCCTCGGCAACCAAAGATCGAATACTGGACAATGCCCCGAAAACTTTAAGTTCCCTCCCTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

239

Amino Acids

26.79

Weight (kDa)

9.29

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 32 - 218 3.9e-45 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 2 cut(s) 72, 630
AcoI YGGCCR 2 cut(s) 113, 305
AfaI GTAC 1 cut(s) 331
AgsI TTSAA 1 cut(s) 529
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 1 cut(s) 601
AluI AGCT 1 cut(s) 601
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 440
AoxI GGCC 4 cut(s) 113, 203, 305, 543
ApeKI GCWGC 2 cut(s) 131, 134
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AsuC2I CCSGG 1 cut(s) 561
BalI TGGCCA 2 cut(s) 115, 307
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 143, 146
BccI CCATC 4 cut(s) 26, 316, 498, 557
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 440
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 422
BglII AGATCT 1 cut(s) 270
BisI GCNGC 2 cut(s) 132, 135
BlsI GCNGC 2 cut(s) 133, 136
Bme1390I CCNGG 2 cut(s) 117, 561
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 2 cut(s) 117, 561
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 560, 655
Bse1I ACTGG 2 cut(s) 180, 682
Bse3DI GCAATG 2 cut(s) 99, 484
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 560, 655
BseGI GGATG 3 cut(s) 175, 366, 490
BseMI GCAATG 2 cut(s) 99, 484
BseMII CTCAG 3 cut(s) 89, 457, 487
BseNI ACTGG 2 cut(s) 180, 682
BseXI GCAGC 2 cut(s) 143, 146
BsgI GTGCAG 2 cut(s) 150, 411
BshFI GGCC 4 cut(s) 115, 205, 307, 545
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 560, 633
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 4 cut(s) 115, 205, 307, 545
Bso31I GGTCTC 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 270, 668
BspACI CCGC 2 cut(s) 72, 630
BspANI GGCC 4 cut(s) 115, 205, 307, 545
BspCNI CTCAG 3 cut(s) 88, 456, 486
BspLI GGNNCC 1 cut(s) 637
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 99, 484
BsrI ACTGG 2 cut(s) 180, 682
BssECI CCNNGG 2 cut(s) 560, 655
BssMI GATC 2 cut(s) 270, 668
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 128
BstDEI CTNAG 5 cut(s) 75, 246, 267, 443, 473
BstF5I GGATG 3 cut(s) 175, 366, 490
BstKTI GATC 2 cut(s) 273, 671
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 2 cut(s) 270, 668
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 115, 559
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 143, 146
BstX2I RGATCY 1 cut(s) 270
BstXI CCANNNNNNTGG 2 cut(s) 292, 497
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 4 cut(s) 115, 205, 307, 545
BtsCI GGATG 3 cut(s) 175, 366, 490
BtsIMutI CAGTG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 330
CviAII CATG 2 cut(s) 428, 460
CviJI RGCY 9 cut(s) 51, 115, 120, 205, 307, 327, 545, 565, 601
CviKI_1 RGCY 9 cut(s) 51, 115, 120, 205, 307, 327, 545, 565, 601
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 5 cut(s) 75, 246, 267, 443, 473
DpnI GATC 2 cut(s) 272, 670
DpnII GATC 2 cut(s) 270, 668
EaeI YGGCCR 2 cut(s) 113, 305
Eco31I GGTCTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 427, 459
FauNDI CATATG 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 132, 135
FokI GGATG 3 cut(s) 162, 373, 477
Fsp4HI GCNGC 2 cut(s) 132, 135
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 132, 135
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 4 cut(s) 115, 205, 307, 545
HapII CCGG 2 cut(s) 560, 633
Hin1II CATG 2 cut(s) 431, 463
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 395, 642
HpaII CCGG 2 cut(s) 560, 633
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 77, 445, 466
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 8 cut(s) 131, 240, 364, 392, 431, 482, 521, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 5 cut(s) 75, 246, 267, 443, 473
Hsp92II CATG 2 cut(s) 431, 463
Kzo9I GATC 2 cut(s) 270, 668
LmnI GCTCC 1 cut(s) 468
Lsp1109I GCAGC 2 cut(s) 143, 146
LweI GCATC 1 cut(s) 351
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 572
MalI GATC 2 cut(s) 272, 670
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 270, 668
MboII GAAGA 3 cut(s) 13, 460, 548
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 2 cut(s) 115, 307
MluCI AATT 2 cut(s) 189, 301
MluNI TGGCCA 2 cut(s) 115, 307
MnlI CCTC 3 cut(s) 401, 665, 717
Mox20I TGGCCA 2 cut(s) 115, 307
MscI TGGCCA 2 cut(s) 115, 307
MseI TTAA 1 cut(s) 699
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 2 cut(s) 115, 307
MspI CCGG 2 cut(s) 560, 633
MspR9I CCNGG 2 cut(s) 117, 561
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 561
NdeI CATATG 1 cut(s) 200
NdeII GATC 2 cut(s) 270, 668
NlaIII CATG 2 cut(s) 431, 463
NlaIV GGNNCC 1 cut(s) 637
NmeAIII GCCGAG 1 cut(s) 636
NspI RCATGY 1 cut(s) 463
PfeI GAWTC 2 cut(s) 395, 642
PkrI GCNGC 2 cut(s) 133, 136
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 637
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 2 cut(s) 132, 135
Sau3AI GATC 2 cut(s) 270, 668
ScrFI CCNGG 2 cut(s) 117, 561
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 236, 282, 412, 436, 603
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 495
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 2 cut(s) 189, 301
SsiI CCGC 2 cut(s) 72, 630
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 115, 559
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 671
TasI AATT 2 cut(s) 189, 301
TfiI GAWTC 2 cut(s) 395, 642
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 1 cut(s) 116
TseI GCWGC 2 cut(s) 131, 134
TspDTI ATGAA 2 cut(s) 17, 416
TspRI CASTG 1 cut(s) 116
XceI RCATGY 1 cut(s) 463
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.