FvH4_2g12003

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001772
Physical Location & Seq
Forward (+)
10498830 .. 10500978
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12003.t1

Sequence Viewer

Length: 1068 bp
ATGTGTTCTGCAATCTTTCTGGTCAGGAGAGTTATAATCCTATTATTGAGAAAGTTCAAAGCAAGCTCTCAGGATGGAAGAGTAAGACTCTCAATTTTGCTGGGAGGCTCACTCTGGTGCAAGCTGTTACTTCTACTATGCCTATTTATGCTATGCAAACGGCTAAACTTCCTGTTTCTGTGTCATTCTTTGGATAAGCTTTCAAGAGACTTTTTATGGGGTGACTGTGATGAGAAGAAGAAAGTTCACTTGATGAGTTGGGATAAAATTTGCAGACCTAAAGCGAATGGGGGTTTGGGACTGAAGAAAGCTATTCACATGAATCAGGCAATGCTTGCAAAGGTTAGTTGGAGGATATTTCAGAATGATAAAGGTCTGTGGTGTGATGTGCTTACTAAGAAGTATGTAAAATCTCATTCTTTGTTTAGCCGTAATTACTATTGCCCTACTGCTTGCTCTAGTACGTGGAGAGGAGTGGTTCATGGGGCCAAGCTGGTTTTTCAAGGTCTGCGTTGGAGAATTGGTGATGGAAATAATATTAGTTTCTGGTCTGATAATTGGCTTGGTTCTGGTCCATTAATTTTGAAAGTTTCTACTGATAATGCTTTGGACCTTATTCTCAAAGTCAATGATTGTTGGAATGATGATGGCTGGGACTTAGGTTTCTTACAATCTGTTCTTAATGATGATATTGTTAGAATTCCTGTCGGTTTTGAAGGTGGAGGGGATGATAAGCTCATTTGGGGAGCCACTTCTGATGGGAAATTTTCTGTCAAATCTGCCTATATTAGCCTCATCCAACATGAAAATTTTGACTCCTTTCCCTGGTATTATATTTGGAGATTGCCAATTCCTCCAAAACTTAAAACTTTCTTCTGGGACTGCAAAATGGCTAAGGAGATCTGGAATAAGCTCATTTGTTCTAATTCGATTGCAAGATCTTGGACCCTTGATTGGAATGGCTGGATTCATGCTAATTCTCACAGTAAACAGGTTTGCTTTGGGGGTTTGAAGTGGTCTAATGTTTTCATCTTTACTTGTTGGTACATTTGGAAATGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

356

Amino Acids

41.16

Weight (kDa)

9.39

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AcsI RAATTY 4 cut(s) 267, 699, 764, 808
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 2 cut(s) 463, 1046
AfiI CCNNNNNNNGG 2 cut(s) 825, 954
AgsI TTSAA 6 cut(s) 58, 204, 503, 586, 716, 1012
AjnI CCWGG 1 cut(s) 824
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 7 cut(s) 66, 124, 199, 311, 493, 736, 913
AluI AGCT 7 cut(s) 66, 124, 199, 311, 493, 736, 913
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 1 cut(s) 486
ApoI RAATTY 4 cut(s) 267, 699, 764, 808
AseI ATTAAT 1 cut(s) 578
AspS9I GGNCC 4 cut(s) 486, 572, 610, 945
AsuHPI GGTGA 2 cut(s) 233, 536
AvaII GGWCC 3 cut(s) 572, 610, 945
BccI CCATC 4 cut(s) 68, 521, 641, 752
BceAI ACGGC 2 cut(s) 176, 414
BciT130I CCWGG 1 cut(s) 826
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 459
BglII AGATCT 2 cut(s) 900, 938
Bme1390I CCNGG 1 cut(s) 826
Bme18I GGWCC 3 cut(s) 572, 610, 945
BmgT120I GGNCC 4 cut(s) 486, 572, 610, 945
BmiI GGNNCC 3 cut(s) 487, 748, 947
BmrFI CCNGG 1 cut(s) 826
BmsI GCATC 1 cut(s) 1052
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 96, 128
Bpu10I CCTNAGC 1 cut(s) 894
BsaAI YACGTR 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 824
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 825, 954
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 826
BseDI CCNNGG 1 cut(s) 824
BseGI GGATG 3 cut(s) 79, 733, 795
BseLI CCNNNNNNNGG 2 cut(s) 825, 954
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 486
BseYI CCCAGC 2 cut(s) 100, 651
BshFI GGCC 1 cut(s) 488
BslFI GGGAC 3 cut(s) 312, 668, 893
BslI CCNNNNNNNGG 2 cut(s) 825, 954
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 3 cut(s) 312, 668, 893
BsnI GGCC 1 cut(s) 488
Bsp143I GATC 2 cut(s) 900, 938
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 3 cut(s) 487, 748, 947
BsrDI GCAATG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 824
BssMI GATC 2 cut(s) 900, 938
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 2 cut(s) 227, 986
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 64, 122, 336, 454
BstDEI CTNAG 4 cut(s) 69, 396, 658, 894
BstF5I GGATG 3 cut(s) 79, 733, 795
BstKTI GATC 2 cut(s) 903, 941
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 900, 938
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 826
BstSCI CCNGG 1 cut(s) 824
BstX2I RGATCY 2 cut(s) 900, 938
BstYI RGATCY 2 cut(s) 900, 938
BsuRI GGCC 1 cut(s) 488
BtsCI GGATG 3 cut(s) 79, 733, 795
Cac8I GCNNGC 4 cut(s) 64, 122, 336, 454
Cfr13I GGNCC 4 cut(s) 486, 572, 610, 945
Csp6I GTAC 2 cut(s) 462, 1045
CviAII CATG 4 cut(s) 319, 482, 803, 971
CviQI GTAC 2 cut(s) 462, 1045
DdeI CTNAG 4 cut(s) 69, 396, 658, 894
DpnI GATC 2 cut(s) 902, 940
DpnII GATC 2 cut(s) 900, 938
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco47I GGWCC 3 cut(s) 572, 610, 945
Eco57I CTGAAG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 824
FaeI CATG 4 cut(s) 322, 485, 806, 974
FaqI GGGAC 3 cut(s) 312, 668, 893
FatI CATG 4 cut(s) 318, 481, 802, 970
FokI GGATG 3 cut(s) 86, 740, 782
FspBI CTAG 1 cut(s) 459
GsaI CCCAGC 2 cut(s) 104, 655
HaeIII GGCC 1 cut(s) 488
Hin1II CATG 4 cut(s) 322, 485, 806, 974
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 87, 322, 815, 967
HphI GGTGA 2 cut(s) 233, 536
Hpy166II GTNNAC 2 cut(s) 247, 989
Hpy188I TCNGA 3 cut(s) 363, 553, 757
Hpy188III TCNNGA 4 cut(s) 25, 71, 204, 904
Hpy8I GTNNAC 2 cut(s) 247, 989
HpyAV CCTTC 1 cut(s) 710
HpyCH4III ACNGT 2 cut(s) 227, 986
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 7 cut(s) 11, 120, 156, 273, 338, 885, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 4 cut(s) 69, 396, 658, 894
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 4 cut(s) 322, 485, 806, 974
Kzo9I GATC 2 cut(s) 900, 938
LmnI GCTCC 1 cut(s) 746
LweI GCATC 1 cut(s) 1052
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 126, 221
MalI GATC 2 cut(s) 902, 940
MboI GATC 2 cut(s) 900, 938
MboII GAAGA 5 cut(s) 90, 247, 250, 316, 865
MflI RGATCY 2 cut(s) 900, 938
MlyI GAGTC 2 cut(s) 81, 809
MmeI TCCRAC 4 cut(s) 329, 494, 617, 823
MnlI CCTC 6 cut(s) 98, 345, 464, 716, 803, 864
MseI TTAA 3 cut(s) 578, 681, 864
MslI CAYNNNNRTG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 826
MvaI CCWGG 1 cut(s) 826
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 2 cut(s) 900, 938
NlaIII CATG 4 cut(s) 322, 485, 806, 974
NlaIV GGNNCC 3 cut(s) 487, 748, 947
NmuCI GTSAC 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 115
PfeI GAWTC 2 cut(s) 322, 967
PleI GAGTC 2 cut(s) 81, 809
PpsI GAGTC 2 cut(s) 81, 809
Ppu21I YACGTR 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 578
PsiI TTATAA 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 824
PspFI CCCAGC 2 cut(s) 100, 651
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 3 cut(s) 487, 748, 947
PspPI GGNCC 4 cut(s) 486, 572, 610, 945
PsuI RGATCY 2 cut(s) 900, 938
RsaI GTAC 2 cut(s) 463, 1046
RsaNI GTAC 2 cut(s) 462, 1045
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 3 cut(s) 578, 681, 864
Sau3AI GATC 2 cut(s) 900, 938
Sau96I GGNCC 4 cut(s) 486, 572, 610, 945
SchI GAGTC 2 cut(s) 81, 809
ScrFI CCNGG 1 cut(s) 826
SfaNI GCATC 1 cut(s) 1052
SinI GGWCC 3 cut(s) 572, 610, 945
SmiMI CAYNNNNRTG 1 cut(s) 115
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 824
TaaI ACNGT 2 cut(s) 227, 986
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 929
TfiI GAWTC 2 cut(s) 322, 967
Tru1I TTAA 3 cut(s) 578, 681, 864
Tru9I TTAA 3 cut(s) 578, 681, 864
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 5 cut(s) 335, 470, 819, 959, 1018
VpaK11BI GGWCC 3 cut(s) 572, 610, 945
VspI ATTAAT 1 cut(s) 578
XapI RAATTY 4 cut(s) 267, 699, 764, 808
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.