Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017237.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2153

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017237.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atgcactctgctactctagccgcaattacaaaccaacgcttcgccgtcatctggcctcgaggagtcgtcgtcgtcctggtgagccgacaacgggaagactacgagtcccagaggtcagacgacggcaaaagagtcactaattctactaagagtgagagtgccgaaaagtggacggcgaagccgtttgggaatgtggtgaaacggcagagtcctcggtggcctcttgtaggctttccggcaccgtctggcccgagggagtcctcagtggccggcaagacttgttccggcgtcatctgccttcggggagtagtcgtcgtcatggaaactagagaaccgccatggaaaccagaccagagcttcaacaccgagagagggtatagagaggagagcgagggagagagacaaagagagtcaatcgggtttagggtttatggctcggggagtcgacgtcctcatggaaacaagagaaccgccatggaaaccagaccagagcttcaattccgagagagggtagagagagagagagtgaggggaagagagttaattgtgtttagggtttatggctcggggattcgacgtcctcatggaaaccagagaaccgccatggaaaccagaccagagcttcaattcccagagtgggtagagagagagagggagggtgtgggtagagaaactggtaatggtgtgggggtcgtagctttagctaagcatgttttgcatgctctcttagcattaaatatggagattgaagcatgtaaagcaggtctcttacttggtatccaccaagattggacggaagtagacgttgaaagtgattctatcattttggttgctgtcttgaaaagaggtgaggaaaaataccttcgtagtgccaatcttgttgatgactcttatgttgtccccaaggattgttccagtacatggagaagtattgttcatggggctaatcttcttaaacaaggcttgacctggagagttggagatggaagacgaaataatttctggttcgatatgtggctgcctcctttttcccttcagaatcatattcttccttctgcctcctttaatcctactgataaaatttctaacttttgggatgaccatggttgggacattgataaattaattgcttgtcttcctcaacatattatcgaccagattattcgtattcctcctggctttgatggatgtggagaagataaacaaatttgggggtatacatctaatggtatctttagtgtaaagtctgcttatgctatttttcttgcatcctattgtcaggataactctccatggaaattcatttggaaattgcagcttcctcccaaattcaagacattaacatggattgtttgccatggcaaactcttaacaaatgtccatggcaaactcttaacaaatgttcaaagagccaaaaggaatttgaccaatgacaactgttgtcctttatgccatcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

486

Amino Acids

55.31

Weight (kDa)

9.24

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	451, 580
AbsI	CCTCGAGG	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	921
AccI	GTMKAC	3 cut(s)	445, 801, 1217
AciI	CCGC	4 cut(s)	21, 335, 471, 600
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	5 cut(s)	1080, 1206, 1298, 1328, 1420
AcuI	CTGAAG	1 cut(s)	1019
AcyI	GRCGYC	3 cut(s)	288, 448, 577
AfaI	GTAC	1 cut(s)	919
AfiI	CCNNNNNNNGG	9 cut(s)	51, 91, 168, 227, 372, 508, 637, 921, 1108
AgsI	TTSAA	8 cut(s)	361, 497, 626, 749, 809, 841, 1333, 1406
AhdI	GACNNNNNGTC	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	75, 968, 1174
AluBI	AGCT	6 cut(s)	357, 493, 622, 698, 704, 1318
AluI	AGCT	6 cut(s)	357, 493, 622, 698, 704, 1318
Alw26I	GTCTC	2 cut(s)	394, 770
Ama87I	CYCGRG	4 cut(s)	57, 250, 436, 565
AoxI	GGCC	4 cut(s)	53, 218, 247, 267
ApeKI	GCWGC	2 cut(s)	1018, 1315
ApoI	RAATTY	5 cut(s)	1080, 1206, 1298, 1328, 1420
AseI	ATTAAT	1 cut(s)	1124
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	91, 208, 860
AvaI	CYCGRG	4 cut(s)	57, 250, 436, 565
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	3 cut(s)	102, 994, 1127
BbvI	GCAGC	2 cut(s)	1005, 1327
BccI	CCATC	2 cut(s)	977, 1178
BceAI	ACGGC	5 cut(s)	29, 139, 166, 189, 218
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	77, 970, 1176
BciVI	GTATCC	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	394, 770
BfaI	CTAG	2 cut(s)	17, 327
BfuAI	ACCTGC	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	3 cut(s)	21, 1019, 1316
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	3 cut(s)	22, 1020, 1317
Bme1390I	CCNGG	3 cut(s)	77, 970, 1176
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmeT110I	CYCGRG	4 cut(s)	57, 250, 436, 565
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	3 cut(s)	77, 970, 1176
BmsI	GCATC	1 cut(s)	1277
BpiI	GAAGAC	3 cut(s)	102, 994, 1127
BpmI	CTGGAG	1 cut(s)	991
Bpu1102I	GCTNAGC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	288, 448, 577
BsaI	GGTCTC	1 cut(s)	770
BsaXI	ACNNNNNCTCC	6 cut(s)	54, 84, 297, 327, 433, 463
Bsc4I	CCNNNNNNNGG	9 cut(s)	51, 91, 168, 227, 372, 508, 637, 921, 1108
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	679, 915
BseBI	CCWGG	3 cut(s)	77, 970, 1176
BseGI	GGATG	3 cut(s)	1102, 1193, 1268
BseLI	CCNNNNNNNGG	9 cut(s)	51, 91, 168, 227, 372, 508, 637, 921, 1108
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	679, 915
BseRI	GAGGAG	2 cut(s)	75, 398
BseXI	GCAGC	2 cut(s)	1005, 1327
BshFI	GGCC	4 cut(s)	55, 220, 249, 269
BshNI	GGYRCC	1 cut(s)	238
BsiHKCI	CYCGRG	4 cut(s)	57, 250, 436, 565
BsiSI	CCGG	3 cut(s)	236, 270, 285
BslFI	GGGAC	3 cut(s)	91, 884, 1124
BslI	CCNNNNNNNGG	9 cut(s)	51, 91, 168, 227, 372, 508, 637, 921, 1108
BsmAI	GTCTC	2 cut(s)	394, 770
BsmFI	GGGAC	3 cut(s)	91, 884, 1124
BsnI	GGCC	4 cut(s)	55, 220, 249, 269
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	4 cut(s)	57, 250, 436, 565
Bsp1720I	GCTNAGC	1 cut(s)	705
Bsp19I	CCATGG	7 cut(s)	338, 474, 603, 1102, 1292, 1357, 1381
BspACI	CCGC	4 cut(s)	21, 335, 471, 600
BspANI	GGCC	4 cut(s)	55, 220, 249, 269
BspCNI	CTCAG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	770
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	679, 915
BssAI	RCCGGY	1 cut(s)	269
BssNAI	GTATAC	1 cut(s)	1218
BssNI	GRCGYC	3 cut(s)	288, 448, 577
BssT1I	CCWWGG	8 cut(s)	338, 474, 603, 903, 1102, 1292, 1357, 1381
Bst1107I	GTATAC	1 cut(s)	1218
Bst2UI	CCWGG	3 cut(s)	77, 970, 1176
Bst4CI	ACNGT	2 cut(s)	243, 1439
Bst6I	CTCTTC	1 cut(s)	529
BstACI	GRCGYC	3 cut(s)	288, 448, 577
BstAPI	GCANNNNNTGC	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	271, 720
BstDEI	CTNAG	4 cut(s)	147, 262, 705, 727
BstDSI	CCRYGG	7 cut(s)	338, 474, 603, 1102, 1292, 1357, 1381
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	1102, 1193, 1268
BstMAI	GTCTC	2 cut(s)	394, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 294, 715, 728, 758
BstNI	CCWGG	3 cut(s)	77, 970, 1176
BstNSI	RCATGY	3 cut(s)	713, 722, 756
BstSCI	CCNGG	3 cut(s)	75, 968, 1174
BstV1I	GCAGC	2 cut(s)	1005, 1327
BstV2I	GAAGAC	3 cut(s)	102, 994, 1127
BstZ17I	GTATAC	1 cut(s)	1218
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	55, 220, 249, 269
BtgI	CCRYGG	7 cut(s)	338, 474, 603, 1102, 1292, 1357, 1381
BtsCI	GGATG	3 cut(s)	1102, 1193, 1268
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	2 cut(s)	271, 720
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	918
CspCI	CAANNNNNGTGG	2 cut(s)	770, 805
CviQI	GTAC	1 cut(s)	918
DdeI	CTNAG	4 cut(s)	147, 262, 705, 727
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	529
Eco130I	CCWWGG	8 cut(s)	338, 474, 603, 903, 1102, 1292, 1357, 1381
Eco31I	GGTCTC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	1019
Eco88I	CYCGRG	4 cut(s)	57, 250, 436, 565
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	75, 968, 1174
EcoT14I	CCWWGG	8 cut(s)	338, 474, 603, 903, 1102, 1292, 1357, 1381
ErhI	CCWWGG	8 cut(s)	338, 474, 603, 903, 1102, 1292, 1357, 1381
FaqI	GGGAC	3 cut(s)	91, 884, 1124
FblI	GTMKAC	3 cut(s)	445, 801, 1217
Fnu4HI	GCNGC	3 cut(s)	21, 1019, 1316
FokI	GGATG	3 cut(s)	1109, 1200, 1255
Fsp4HI	GCNGC	3 cut(s)	21, 1019, 1316
FspBI	CTAG	2 cut(s)	17, 327
GluI	GCNGC	3 cut(s)	21, 1019, 1316
GsuI	CTGGAG	1 cut(s)	991
HaeIII	GGCC	4 cut(s)	55, 220, 249, 269
HapII	CCGG	3 cut(s)	236, 270, 285
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	3 cut(s)	288, 448, 577
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HpaII	CCGG	3 cut(s)	236, 270, 285
HphI	GGTGA	3 cut(s)	91, 208, 860
Hpy166II	GTNNAC	4 cut(s)	171, 446, 802, 1218
Hpy188I	TCNGA	3 cut(s)	118, 503, 1038
Hpy188III	TCNNGA	3 cut(s)	838, 1280, 1333
Hpy8I	GTNNAC	4 cut(s)	171, 446, 802, 1218
Hpy99I	CGWCG	6 cut(s)	71, 74, 125, 317, 450, 579
HpyAV	CCTTC	4 cut(s)	308, 872, 1043, 1062
HpyCH4III	ACNGT	2 cut(s)	243, 1439
HpyCH4IV	ACGT	3 cut(s)	448, 577, 804
HpyCH4V	TGCA	4 cut(s)	4, 718, 1268, 1315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 294, 715, 728, 758
HpyF3I	CTNAG	4 cut(s)	147, 262, 705, 727
HpySE526I	ACGT	3 cut(s)	448, 577, 804
Hsp92I	GRCGYC	3 cut(s)	288, 448, 577
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	1005, 1327
LweI	GCATC	1 cut(s)	1277
MaeI	CTAG	2 cut(s)	17, 327
MaeII	ACGT	3 cut(s)	448, 577, 804
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	7 cut(s)	107, 546, 941, 999, 1040, 1127, 1208
MlyI	GAGTC	8 cut(s)	72, 113, 141, 217, 266, 419, 451, 881
MmeI	TCCRAC	1 cut(s)	958
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	8 cut(s)	542, 734, 954, 1065, 1124, 1340, 1370, 1394
MslI	CAYNNNNRTG	1 cut(s)	1342
MspI	CCGG	3 cut(s)	236, 270, 285
MspR9I	CCNGG	3 cut(s)	77, 970, 1176
MvaI	CCWGG	3 cut(s)	77, 970, 1176
MwoI	GCNNNNNNNGC	5 cut(s)	17, 294, 715, 728, 758
NaeI	GCCGGC	1 cut(s)	271
NcoI	CCATGG	7 cut(s)	338, 474, 603, 1102, 1292, 1357, 1381
NgoMIV	GCCGGC	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	3 cut(s)	713, 722, 756
PaeI	GCATGC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	571, 815, 1039
PflMI	CCANNNNNTGG	1 cut(s)	921
PkrI	GCNGC	3 cut(s)	22, 1020, 1317
PleI	GAGTC	8 cut(s)	71, 112, 140, 216, 265, 418, 450, 881
PpsI	GAGTC	8 cut(s)	71, 112, 140, 216, 265, 418, 450, 881
PshBI	ATTAAT	1 cut(s)	1124
Psp6I	CCWGG	3 cut(s)	75, 968, 1174
PspGI	CCWGG	3 cut(s)	75, 968, 1174
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	248
PspXI	VCTCGAGB	1 cut(s)	57
RsaI	GTAC	1 cut(s)	919
RsaNI	GTAC	1 cut(s)	918
RseI	CAYNNNNRTG	1 cut(s)	1342
SalI	GTCGAC	1 cut(s)	444
SaqAI	TTAA	8 cut(s)	542, 734, 954, 1065, 1124, 1340, 1370, 1394
SatI	GCNGC	3 cut(s)	21, 1019, 1316
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	8 cut(s)	72, 113, 141, 217, 266, 419, 451, 881
ScrFI	CCNGG	3 cut(s)	77, 970, 1176
SfaNI	GCATC	1 cut(s)	1277
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	1342
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	722
SsiI	CCGC	4 cut(s)	21, 335, 471, 600
SspMI	CTAG	2 cut(s)	17, 327
StyD4I	CCNGG	3 cut(s)	75, 968, 1174
StyI	CCWWGG	8 cut(s)	338, 474, 603, 903, 1102, 1292, 1357, 1381
TaaI	ACNGT	2 cut(s)	243, 1439
TaiI	ACGT	3 cut(s)	451, 580, 807
TaqI	TCGA	5 cut(s)	58, 445, 574, 1008, 1152
TatI	WGTACW	1 cut(s)	917
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	571, 815, 1039
Tru1I	TTAA	8 cut(s)	542, 734, 954, 1065, 1124, 1340, 1370, 1394
Tru9I	TTAA	8 cut(s)	542, 734, 954, 1065, 1124, 1340, 1370, 1394
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	1018, 1315
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	926, 1291
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	921
VspI	ATTAAT	1 cut(s)	1124
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	5 cut(s)	1080, 1206, 1298, 1328, 1420
XceI	RCATGY	3 cut(s)	713, 722, 756
XhoI	CTCGAG	1 cut(s)	57
XmiI	GTMKAC	3 cut(s)	445, 801, 1217
XspI	CTAG	2 cut(s)	17, 327
ZraI	GACGTC	2 cut(s)	449, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.