Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005950.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

2193 .. 3437

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005950.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgacaaaaaagatcactattccagcctctgtgtgtgattctattgaaaagttaaatagagattttctatggggagattgtgatggcaagaagaaaactcatcttgcgaattgggatttggtatgtagacctaaggagtatggtggtttaggaattaaaggtatcagacaaatgaatcaagccatgcttgctaaagtgggttggagggtgtttcgagacgatccagagctatggagtcaagttctctttcaaaagtatgttaagaagctccctctgtttcacccccagtataggtatccctctggcagctcaagtacttggcgcagtattgttcatggagtgcagcttttaaagaaaggcttagtttggagaattggtgatggttgttctgtcaatttttggaatgatacctggttatctattggtcccctaagtcgatatgcctctaatgctgctactattaataatgatttgaaaatcaaggattgttggagtggtgatagctggaatttggtattcctcaaatcccagttgagtgatgatattgttaatcagatcgttaaagtgtccccaggttttgtgggttgtggttctgataaagttatttggaatggtactagcaatggccactttactgtgaaatcagcttactctgtcatcatccaggaggaaactcttgccaagcttccttggtttttcttgtggaaattgcctgtccctcctaaattgaagtattttttgtggctcctctatcatggtaagcttcttaccaatgttgaaagaactaaaagaaagatgactactatctcatcttgccttgcttgtcaaagacaatctgaaaccttactccacttatttcgtgattgtcctgtggctcaagcggttgggaatggtattatatgcttggataccattgctagaaccaaggatcttgattggtttgcttggatttctgcaaatgttcactgtaagggagattgttatggtggattaaaatggtgttcagtttttgtttacacttgttggtttctatggaaatggagaaacaaattggtttttgatcctgacttccattttccatataatcctagcaaattgatcattgatgctatcagagaatggacctctgctaatgtgaccaagaccaattctaatggtagaatcaatatcagcatggtgtggagtaaacctccagtcaacttttacaaacttaatgttgatggtgcccgaaatcggaatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

414

Amino Acids

47.51

Weight (kDa)

9.49

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1223
AccI	GTMKAC	1 cut(s)	127
AciI	CCGC	1 cut(s)	881
AclWI	GGATC	3 cut(s)	215, 936, 1055
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	2 cut(s)	316, 616
AfiI	CCNNNNNNNGG	2 cut(s)	291, 1233
AgsI	TTSAA	5 cut(s)	47, 251, 475, 730, 779
AjnI	CCWGG	3 cut(s)	410, 571, 663
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	8 cut(s)	229, 268, 309, 346, 504, 647, 685, 763
AluI	AGCT	8 cut(s)	229, 268, 309, 346, 504, 647, 685, 763
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	3 cut(s)	215, 936, 1055
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	3 cut(s)	306, 343, 452
ApoI	RAATTY	1 cut(s)	508
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	425, 1122
AsuHPI	GGTGA	3 cut(s)	272, 389, 509
AvaII	GGWCC	2 cut(s)	425, 1122
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	1228
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	1223
BbvI	GCAGC	3 cut(s)	318, 355, 439
BccI	CCATC	3 cut(s)	77, 374, 1214
BciT130I	CCWGG	3 cut(s)	412, 573, 665
BciVI	GTATCC	2 cut(s)	306, 901
BclI	TGATCA	1 cut(s)	1098
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	618, 918, 1089
BfuI	GTATCC	2 cut(s)	306, 901
BisI	GCNGC	3 cut(s)	307, 344, 453
BlsI	GCNGC	3 cut(s)	308, 345, 454
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	3 cut(s)	412, 573, 665
Bme18I	GGWCC	2 cut(s)	425, 1122
BmgT120I	GGNCC	2 cut(s)	425, 1122
BmiI	GGNNCC	3 cut(s)	427, 746, 1225
BmrFI	CCNGG	3 cut(s)	412, 573, 665
BmrI	ACTGGG	2 cut(s)	280, 523
BmsI	GCATC	1 cut(s)	1096
BmuI	ACTGGG	2 cut(s)	280, 523
BplI	GAGNNNNNCTC	2 cut(s)	1174, 1206
BpmI	CTGGAG	1 cut(s)	1176
BpuEI	CTTGAG	2 cut(s)	295, 861
BsaJI	CCNNGG	3 cut(s)	571, 689, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 1233
Bse1I	ACTGG	3 cut(s)	286, 529, 1193
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	628, 912
BseBI	CCWGG	3 cut(s)	412, 573, 665
BseDI	CCNNGG	3 cut(s)	571, 689, 924
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	2 cut(s)	291, 1233
BseMI	GCAATG	2 cut(s)	628, 912
BseNI	ACTGG	3 cut(s)	286, 529, 1193
BseRI	GAGGAG	1 cut(s)	737
BseSI	GKGCMC	1 cut(s)	1228
BseXI	GCAGC	3 cut(s)	318, 355, 439
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	1 cut(s)	1223
BslFI	GGGAC	3 cut(s)	411, 553, 701
BslI	CCNNNNNNNGG	2 cut(s)	291, 1233
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	3 cut(s)	411, 553, 701
BsnI	GGCC	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	1228
Bsp143I	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
BspACI	CCGC	1 cut(s)	881
BspANI	GGCC	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	427, 746, 1225
BspPI	GGATC	3 cut(s)	215, 936, 1055
BspT107I	GGYRCC	1 cut(s)	1223
BsrDI	GCAATG	2 cut(s)	628, 912
BsrI	ACTGG	3 cut(s)	286, 529, 1193
BssECI	CCNNGG	3 cut(s)	571, 689, 924
BssMI	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
BssT1I	CCWWGG	2 cut(s)	689, 924
Bst2UI	CCWGG	3 cut(s)	412, 573, 665
Bst4CI	ACNGT	2 cut(s)	637, 968
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	132, 361, 431
BstF5I	GGATG	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	6 cut(s)	15, 223, 558, 931, 1063, 1101
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 449
BstNI	CCWGG	3 cut(s)	412, 573, 665
BstSCI	CCNGG	3 cut(s)	410, 571, 663
BstSLI	GKGCMC	1 cut(s)	1228
BstV1I	GCAGC	3 cut(s)	318, 355, 439
BstX2I	RGATCY	1 cut(s)	928
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	928
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	306, 901
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	964
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	425, 1122
CsiI	ACCWGGT	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	315, 615
CviAII	CATG	4 cut(s)	184, 335, 755, 1174
CviQI	GTAC	2 cut(s)	315, 615
DdeI	CTNAG	3 cut(s)	132, 361, 431
DpnI	GATC	6 cut(s)	14, 222, 557, 930, 1062, 1100
DpnII	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	689, 924
Eco47I	GGWCC	2 cut(s)	425, 1122
Eco81I	CCTNAGG	1 cut(s)	132
EcoRII	CCWGG	3 cut(s)	410, 571, 663
EcoT14I	CCWWGG	2 cut(s)	689, 924
ErhI	CCWWGG	2 cut(s)	689, 924
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	4 cut(s)	187, 338, 758, 1177
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 344, 376
FaqI	GGGAC	3 cut(s)	411, 553, 701
FatI	CATG	4 cut(s)	183, 334, 754, 1173
FbaI	TGATCA	1 cut(s)	1098
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	307, 344, 453
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	307, 344, 453
FspBI	CTAG	3 cut(s)	618, 918, 1089
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	3 cut(s)	307, 344, 453
GsuI	CTGGAG	1 cut(s)	1176
HaeIII	GGCC	1 cut(s)	627
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	4 cut(s)	187, 338, 758, 1177
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	1198
HindII	GTYRAC	1 cut(s)	1198
HindIII	AAGCTT	2 cut(s)	683, 761
HinfI	GANTC	4 cut(s)	38, 175, 235, 1161
HphI	GGTGA	3 cut(s)	272, 389, 509
Hpy166II	GTNNAC	5 cut(s)	128, 964, 1015, 1187, 1198
Hpy188I	TCNGA	6 cut(s)	167, 555, 595, 838, 1115, 1236
Hpy188III	TCNNGA	5 cut(s)	215, 224, 860, 932, 1064
Hpy8I	GTNNAC	5 cut(s)	128, 964, 1015, 1187, 1198
HpyCH4III	ACNGT	2 cut(s)	637, 968
HpyCH4V	TGCA	2 cut(s)	343, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 449
HpyF3I	CTNAG	3 cut(s)	132, 361, 431
Hsp92II	CATG	4 cut(s)	187, 338, 758, 1177
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	1098
Kzo9I	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
LmnI	GCTCC	2 cut(s)	273, 750
Lsp1109I	GCAGC	3 cut(s)	318, 355, 439
LweI	GCATC	1 cut(s)	1096
MabI	ACCWGGT	1 cut(s)	410
MaeI	CTAG	3 cut(s)	618, 918, 1089
MaeIII	GTNAC	1 cut(s)	1135
MalI	GATC	6 cut(s)	14, 222, 557, 930, 1062, 1100
MboI	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	928
MhlI	GDGCHC	1 cut(s)	1228
MlsI	TGGCCA	1 cut(s)	627
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	182, 470
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	9 cut(s)	53, 156, 261, 350, 462, 549, 561, 992, 1212
Msp20I	TGGCCA	1 cut(s)	627
MspR9I	CCNGG	3 cut(s)	412, 573, 665
MvaI	CCWGG	3 cut(s)	412, 573, 665
MwoI	GCNNNNNNNGC	2 cut(s)	188, 449
NdeII	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
NlaIII	CATG	4 cut(s)	187, 338, 758, 1177
NlaIV	GGNNCC	3 cut(s)	427, 746, 1225
NmuCI	GTSAC	1 cut(s)	1135
PfeI	GAWTC	3 cut(s)	38, 175, 1161
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	3 cut(s)	308, 345, 454
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PshBI	ATTAAT	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	410, 571, 663
PspGI	CCWGG	3 cut(s)	410, 571, 663
PspN4I	GGNNCC	3 cut(s)	427, 746, 1225
PspPI	GGNCC	2 cut(s)	425, 1122
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	928
RsaI	GTAC	2 cut(s)	316, 616
RsaNI	GTAC	2 cut(s)	315, 615
SaqAI	TTAA	9 cut(s)	53, 156, 261, 350, 462, 549, 561, 992, 1212
SatI	GCNGC	3 cut(s)	307, 344, 453
Sau3AI	GATC	6 cut(s)	12, 220, 555, 928, 1060, 1098
Sau96I	GGNCC	2 cut(s)	425, 1122
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	412, 573, 665
SduI	GDGCHC	1 cut(s)	1228
SexAI	ACCWGGT	1 cut(s)	410
SfaNI	GCATC	1 cut(s)	1096
SinI	GGWCC	2 cut(s)	425, 1122
SmlI	CTYRAG	2 cut(s)	310, 876
SmoI	CTYRAG	2 cut(s)	310, 876
SsiI	CCGC	1 cut(s)	881
SspMI	CTAG	3 cut(s)	618, 918, 1089
StyD4I	CCNGG	3 cut(s)	410, 571, 663
StyI	CCWWGG	2 cut(s)	689, 924
TaaI	ACNGT	2 cut(s)	637, 968
TaqI	TCGA	2 cut(s)	214, 436
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	38, 175, 1161
Tru1I	TTAA	9 cut(s)	53, 156, 261, 350, 462, 549, 561, 992, 1212
Tru9I	TTAA	9 cut(s)	53, 156, 261, 350, 462, 549, 561, 992, 1212
TscAI	CASTG	1 cut(s)	971
TseFI	GTSAC	1 cut(s)	1135
TseI	GCWGC	3 cut(s)	306, 343, 452
Tsp45I	GTSAC	1 cut(s)	1135
TspDTI	ATGAA	2 cut(s)	188, 323
TspRI	CASTG	1 cut(s)	971
VpaK11BI	GGWCC	2 cut(s)	425, 1122
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	3 cut(s)	618, 918, 1089
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.