Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264107.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 814

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

atgcttgctagaaatatcagtgccatttgtggttatgctcttactaccaacctcggcaaatacttagggatgcctctgctgcactctcgagtcaccaagcacacttatgcctccatcatcgataaggttcagggtcgattggctggttggaaaggtaaattgttaaatcttgcgggtagaacaactctaattaattctgttatctctaccatgcctgtttatgctatgcagactgttaagattcccacttctgtttgtgatactattgagaaaatgagcagagattttctttgggaagataatgatggcagtaggaaggttcaccttgctaattgggacttagtttgtaaaccaaggaggtttggtggattggggaataaaaatattagacacatgaaccaagctatgcttgccaaggtgggatggaggatttttcaaaacgatgacggattatggagcatggttttacatcagaaatatgtgaaagatattcctctgttgcactctgaaaatggttgttcttctagaagttctagtacttggaggagtatagttcatggagtcagattattaaaggaaggtttagtttggagaattggtgatgggagtttagccaatttctggaatgacaaatgggttactgatggaccacttctactacatactctgagtcgggctactgtcaatgattgtctgagagtcaaagattgttggaatgctggtgaatgggatataaatttccttaaaattcacttctgtgatgatattgtcaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

258

Amino Acids

29.25

Weight (kDa)

9.45

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	736, 747
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	437
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	2 cut(s)	736, 747
AseI	ATTAAT	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	4 cut(s)	85, 314, 611, 734
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	5 cut(s)	122, 299, 417, 596, 638
BfaI	CTAG	3 cut(s)	9, 525, 534
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmcAI	AGTACT	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	647
BmsI	GCATC	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	52, 353, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	349, 379, 583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	52, 353, 414
BseGI	GGATG	2 cut(s)	75, 428
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	659, 686
BseRI	GAGGAG	1 cut(s)	559
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	660, 687
BspDI	ATCGAT	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	52, 353, 414
BssT1I	CCWWGG	2 cut(s)	353, 414
Bst4CI	ACNGT	2 cut(s)	235, 682
BstC8I	GCNNGC	2 cut(s)	6, 411
BstDEI	CTNAG	4 cut(s)	64, 340, 668, 695
BstF5I	GGATG	2 cut(s)	75, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 410
BstV1I	GCAGC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	75, 428
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	6, 411
Cfr13I	GGNCC	1 cut(s)	647
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	4 cut(s)	211, 394, 460, 557
CviJI	RGCY	4 cut(s)	143, 404, 614, 677
CviKI_1	RGCY	4 cut(s)	143, 404, 614, 677
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	4 cut(s)	64, 340, 668, 695
Eco130I	CCWWGG	2 cut(s)	353, 414
Eco47I	GGWCC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	353, 414
ErhI	CCWWGG	2 cut(s)	353, 414
FaeI	CATG	4 cut(s)	214, 397, 463, 560
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	210, 393, 459, 556
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	82, 435
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	3 cut(s)	9, 525, 534
GluI	GCNGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	214, 397, 463, 560
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	5 cut(s)	90, 241, 561, 670, 699
HphI	GGTGA	4 cut(s)	85, 314, 611, 734
Hpy166II	GTNNAC	3 cut(s)	322, 350, 772
Hpy188I	TCNGA	5 cut(s)	474, 508, 566, 669, 696
Hpy188III	TCNNGA	3 cut(s)	87, 525, 622
Hpy8I	GTNNAC	3 cut(s)	322, 350, 772
HpyAV	CCTTC	2 cut(s)	310, 572
HpyCH4III	ACNGT	2 cut(s)	235, 682
HpyCH4V	TGCA	3 cut(s)	82, 229, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 410
HpyF3I	CTNAG	4 cut(s)	64, 340, 668, 695
Hsp92II	CATG	4 cut(s)	214, 397, 463, 560
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	5 cut(s)	116, 129, 228, 607, 705
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	9, 525, 534
MaeIII	GTNAC	2 cut(s)	91, 637
MboII	GAAGA	2 cut(s)	308, 513
MluCI	AATT	8 cut(s)	158, 189, 193, 331, 594, 616, 736, 747
MlyI	GAGTC	4 cut(s)	99, 570, 679, 708
MmeI	TCCRAC	2 cut(s)	128, 692
MnlI	CCTC	7 cut(s)	62, 84, 121, 351, 420, 504, 537
MseI	TTAA	5 cut(s)	164, 192, 237, 572, 744
MslI	CAYNNNNRTG	2 cut(s)	105, 756
Mva1269I	GAATGC	1 cut(s)	721
MwoI	GCNNNNNNNGC	2 cut(s)	79, 410
NlaIII	CATG	4 cut(s)	214, 397, 463, 560
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	756
PaeR7I	CTCGAG	1 cut(s)	87
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	621
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	4 cut(s)	98, 569, 678, 707
PpsI	GAGTC	4 cut(s)	98, 569, 678, 707
PshBI	ATTAAT	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	647
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	105, 756
SaqAI	TTAA	5 cut(s)	164, 192, 237, 572, 744
SatI	GCNGC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	4 cut(s)	99, 570, 679, 708
SetI	ASST	9 cut(s)	54, 129, 157, 321, 327, 362, 406, 420, 583
SfaNI	GCATC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	105, 756
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	8 cut(s)	158, 189, 193, 331, 594, 616, 736, 747
SsiI	CCGC	1 cut(s)	173
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	9, 525, 534
StyI	CCWWGG	2 cut(s)	353, 414
TaaI	ACNGT	2 cut(s)	235, 682
TaqI	TCGA	3 cut(s)	88, 120, 136
TasI	AATT	8 cut(s)	158, 189, 193, 331, 594, 616, 736, 747
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	5 cut(s)	164, 192, 237, 572, 744
Tru9I	TTAA	5 cut(s)	164, 192, 237, 572, 744
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	410, 545
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	2 cut(s)	736, 747
XbaI	TCTAGA	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	3 cut(s)	9, 525, 534
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.