Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018807.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50685 .. 52261

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018807.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggtcccaccgtcgacctcttcatccaccgcgtcgcctatggcaccacaaaattttgttcaacagttttgttgcaagaataagacctttgatgcagaagctgatcagtccaaatcaaacgatctcatgcttttcgctgaagctaatgttgaacgggcctgcatactcaagaaatgccttgatattttctgctcgttatctggtcaagcatctgtgactgttgctattcctaattatgccatgcaaactactagattacctatgtcaatctgtgatgacttggacaaaataaatagaaacttcctttggggtgatttagagagcaagaaaaaggtgcatcttgtgaactgggatattgtttgcttgcctaaatctcttggaggtcttggagtaaaaaaagctactaatatgaatcaggcaatactagctaaggctagatggaggatctttcaaaatgaccctggtttgtggacctcaatttatagagaaaagtacctgaaaaatgataatctctctgacaaggattaccactatccaaaggattgttccagtacatggaaaaatgtttcccatggagtcaatttattgaaacgaggacttatttggagagttggagatggcaaggaaattaaattttggactgatatttggctgcctcctctaccacgcatacactatgctcttcctagtgcctttattgatagcaatattactctatgctctttttgggatgctaatggttggaacattgacctgctattctcgcttcttccttctggtattgttaatcaaattgttcacattcctcctaggtttgatggttgtggagatgacattcaaatttggggttgcacttcaaatggttctttctctgtaaagtctgcctatgatatatttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

300

Amino Acids

33.85

Weight (kDa)

8.23

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	3 cut(s)	52, 632, 840
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	494, 553
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	6 cut(s)	62, 152, 452, 589, 839, 858
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	4 cut(s)	289, 321, 529, 561
AluBI	AGCT	4 cut(s)	101, 143, 401, 428
AluI	AGCT	4 cut(s)	101, 143, 401, 428
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	3 cut(s)	52, 632, 840
AspA2I	CCTAGG	1 cut(s)	809
AspS9I	GGNCC	3 cut(s)	4, 156, 471
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	4, 471
AvrII	CCTAGG	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	3 cut(s)	432, 611, 812
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	5 cut(s)	252, 425, 435, 687, 810
BfuAI	ACCTGC	1 cut(s)	762
BisI	GCNGC	1 cut(s)	653
BlnI	CCTAGG	1 cut(s)	809
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	2 cut(s)	4, 471
BmgT120I	GGNCC	3 cut(s)	4, 156, 471
BmiI	GGNNCC	2 cut(s)	6, 45
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	4 cut(s)	82, 218, 346, 721
BmuI	ACTGGG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	460, 571, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	2 cut(s)	353, 549
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	460, 571, 809
BseGI	GGATG	2 cut(s)	23, 736
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	353, 549
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	555
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	103, 121, 444
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	6, 45
BspMI	ACCTGC	1 cut(s)	762
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	353, 549
BssECI	CCNNGG	3 cut(s)	460, 571, 809
BssMI	GATC	3 cut(s)	103, 121, 444
BssT1I	CCWWGG	2 cut(s)	571, 809
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	12, 66, 220
Bst6I	CTCTTC	2 cut(s)	25, 687
BstC8I	GCNNGC	2 cut(s)	160, 365
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	23, 736
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	106, 124, 447
BstMBI	GATC	3 cut(s)	103, 121, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 763
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	23, 736
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	160, 365
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	4, 156, 471
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	493, 552
CviAII	CATG	4 cut(s)	127, 241, 555, 572
CviJI	RGCY	7 cut(s)	101, 143, 158, 401, 428, 434, 652
CviKI_1	RGCY	7 cut(s)	101, 143, 158, 401, 428, 434, 652
CviQI	GTAC	2 cut(s)	493, 552
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	3 cut(s)	105, 123, 446
DpnII	GATC	3 cut(s)	103, 121, 444
Eam1104I	CTCTTC	2 cut(s)	25, 687
EarI	CTCTTC	2 cut(s)	25, 687
Eco130I	CCWWGG	2 cut(s)	571, 809
Eco47I	GGWCC	2 cut(s)	4, 471
Eco57I	CTGAAG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	571, 809
ErhI	CCWWGG	2 cut(s)	571, 809
FaeI	CATG	4 cut(s)	130, 244, 558, 575
FatI	CATG	4 cut(s)	126, 240, 554, 571
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	2 cut(s)	10, 743
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	5 cut(s)	252, 425, 435, 687, 810
GluI	GCNGC	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	130, 244, 558, 575
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	412, 576
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	15, 346, 471, 799
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	4 cut(s)	15, 346, 471, 799
Hpy99I	CGWCG	2 cut(s)	16, 37
HpyAV	CCTTC	1 cut(s)	783
HpyCH4III	ACNGT	3 cut(s)	12, 66, 220
HpyCH4V	TGCA	6 cut(s)	75, 95, 162, 244, 337, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 763
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	130, 244, 558, 575
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 121, 444
LguI	GCTCTTC	1 cut(s)	687
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	4 cut(s)	82, 218, 346, 721
MaeI	CTAG	5 cut(s)	252, 425, 435, 687, 810
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	105, 123, 446
MboI	GATC	3 cut(s)	103, 121, 444
MboII	GAAGA	3 cut(s)	12, 674, 761
MflI	RGATCY	1 cut(s)	444
MluCI	AATT	8 cut(s)	52, 232, 477, 580, 627, 632, 792, 840
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	2 cut(s)	592, 722
MnlI	CCTC	8 cut(s)	28, 374, 435, 484, 587, 666, 669, 816
MseI	TTAA	3 cut(s)	630, 786, 901
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	425, 763
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	3 cut(s)	103, 121, 444
NlaIII	CATG	4 cut(s)	130, 244, 558, 575
NlaIV	GGNNCC	2 cut(s)	6, 45
NmuCI	GTSAC	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	6, 45
PspPI	GGNCC	3 cut(s)	4, 156, 471
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	2 cut(s)	494, 553
RsaNI	GTAC	2 cut(s)	493, 552
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	3 cut(s)	630, 786, 901
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	3 cut(s)	103, 121, 444
Sau96I	GGNCC	3 cut(s)	4, 156, 471
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	1 cut(s)	462
SfaNI	GCATC	4 cut(s)	82, 218, 346, 721
SinI	GGWCC	2 cut(s)	4, 471
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	8 cut(s)	52, 232, 477, 580, 627, 632, 792, 840
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	5 cut(s)	252, 425, 435, 687, 810
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	571, 809
TaaI	ACNGT	3 cut(s)	12, 66, 220
TaqI	TCGA	1 cut(s)	14
TasI	AATT	8 cut(s)	52, 232, 477, 580, 627, 632, 792, 840
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	3 cut(s)	630, 786, 901
Tru9I	TTAA	3 cut(s)	630, 786, 901
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	12, 425
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	4, 471
XapI	RAATTY	3 cut(s)	52, 632, 840
XmaJI	CCTAGG	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	5 cut(s)	252, 425, 435, 687, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.