Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008752.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

13503 .. 14646

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008752.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgaatcaggcaatgcttgctaagattgggtggaggatgactcaaggtgatggggttttgtggagcaaggttcttcatcaaaagtacgtcaaagacactcctcttctgcatgctaattattcttgtccttctaggagctctagcacttggagaagtattctccatggtgttcgattgttgaaggaagggttaatctggcaaattggtgatggggctactgttaatttttggaatgacaattggacatctgatggacctttgcttcaaaacattgttgatacgactaatgtcaatcttgacaccaaagttaatgagtgttggagcgatagggaatggaatttgatctttctcgagatgcattttagtgatgatgttattaatagaattgttaaaatacctgttggtttggagggttgtggtcctgatacgataatttggaagggtactagtaatggtcacttcactatgagatctgcttatcatattattttgaatgaagaacactttgaggagttcccttggtatttcgtatggaaacttcctattcctcctaagttgaagactttcctttggctgctttgtcatggtaaggttctcactaatgttgaaagaagcaaaaggaggttgaccacaaattgttactgccctgtgtgtcatgttcaacctgagaccattattcaccttctccgtgattgcccagtggctaagagagtgtgtagtcaaatcatatgcctggactctatttcaagagctatgcagctaaactgggaaattaaccaggttgctgatgtgctttccaaggctggtttggacactgacattggagtgatgcctcctccacatgtgatgccttccttgcttgatgacttgtgtgaaagtcctagatttaggaatgtagtttctgatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

303

Amino Acids

34.78

Weight (kDa)

6.59

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	2 cut(s)	86, 445
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	7 cut(s)	181, 266, 493, 559, 608, 662, 747
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	732, 777
AluBI	AGCT	3 cut(s)	138, 752, 760
AluI	AGCT	3 cut(s)	138, 752, 760
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	574, 757
ApoI	RAATTY	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	254, 419
AsuHPI	GGTGA	3 cut(s)	59, 218, 671
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	254, 419
BanII	GRGCYC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	561, 769
BccI	CCATC	3 cut(s)	44, 203, 245
BciT130I	CCWGG	2 cut(s)	734, 779
BcoDI	GTCTC	1 cut(s)	662
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	4 cut(s)	132, 141, 447, 882
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	2 cut(s)	575, 758
BlsI	GCNGC	2 cut(s)	576, 759
Bme1390I	CCNGG	2 cut(s)	734, 779
Bme18I	GGWCC	2 cut(s)	254, 419
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	254, 419
BmrFI	CCNGG	2 cut(s)	734, 779
BmrI	ACTGGG	2 cut(s)	692, 775
BmsI	GCATC	3 cut(s)	345, 819, 837
BmuI	ACTGGG	2 cut(s)	692, 775
BoxI	GACNNNNGTC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpuEI	CTTGAG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	163, 518, 798
Bse1I	ACTGG	2 cut(s)	698, 770
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	734, 779
BseDI	CCNNGG	3 cut(s)	163, 518, 798
BseGI	GGATG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	698, 770
BseRI	GAGGAG	3 cut(s)	90, 524, 825
BseXI	GCAGC	2 cut(s)	561, 769
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	342, 470
Bsp19I	CCATGG	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	698, 770
BssECI	CCNNGG	3 cut(s)	163, 518, 798
BssMI	GATC	2 cut(s)	342, 470
BssT1I	CCWWGG	3 cut(s)	163, 518, 798
Bst2UI	CCWGG	2 cut(s)	734, 779
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	18, 111
BstDEI	CTNAG	4 cut(s)	21, 552, 666, 705
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	345, 473
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	2 cut(s)	342, 470
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 856
BstNI	CCWGG	2 cut(s)	734, 779
BstNSI	RCATGY	2 cut(s)	113, 845
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	732, 777
BstV1I	GCAGC	2 cut(s)	561, 769
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	705, 813
Cac8I	GCNNGC	2 cut(s)	18, 111
Cfr13I	GGNCC	2 cut(s)	254, 419
CsiI	ACCWGGT	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	85, 444
CviAII	CATG	5 cut(s)	110, 164, 584, 656, 842
CviJI	RGCY	7 cut(s)	138, 215, 574, 704, 752, 760, 803
CviKI_1	RGCY	7 cut(s)	138, 215, 574, 704, 752, 760, 803
CviQI	GTAC	2 cut(s)	85, 444
DdeI	CTNAG	4 cut(s)	21, 552, 666, 705
DpnI	GATC	2 cut(s)	344, 472
DpnII	GATC	2 cut(s)	342, 470
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	3 cut(s)	163, 518, 798
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	2 cut(s)	254, 419
Eco53kI	GAGCTC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	732, 777
EcoT14I	CCWWGG	3 cut(s)	163, 518, 798
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	163, 518, 798
FaeI	CATG	5 cut(s)	113, 167, 587, 659, 845
FatI	CATG	5 cut(s)	109, 163, 583, 655, 841
FauNDI	CATATG	1 cut(s)	728
Fnu4HI	GCNGC	2 cut(s)	575, 758
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	575, 758
FspBI	CTAG	4 cut(s)	132, 141, 447, 882
GluI	GCNGC	2 cut(s)	575, 758
Hin1II	CATG	5 cut(s)	113, 167, 587, 659, 845
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	3 cut(s)	4, 40, 737
HphI	GGTGA	3 cut(s)	59, 218, 671
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	2 cut(s)	250, 904
Hpy188III	TCNNGA	5 cut(s)	296, 350, 352, 422, 747
Hpy8I	GTNNAC	1 cut(s)	627
HpyAV	CCTTC	6 cut(s)	138, 175, 179, 433, 692, 861
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	109, 358, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 856
HpyF3I	CTNAG	4 cut(s)	21, 552, 666, 705
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	113, 167, 587, 659, 845
Kzo9I	GATC	2 cut(s)	342, 470
LmnI	GCTCC	3 cut(s)	63, 135, 321
Lsp1109I	GCAGC	2 cut(s)	561, 769
LweI	GCATC	3 cut(s)	345, 819, 837
MabI	ACCWGGT	1 cut(s)	777
MaeI	CTAG	4 cut(s)	132, 141, 447, 882
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	455, 638
MalI	GATC	2 cut(s)	344, 472
MboI	GATC	2 cut(s)	342, 470
MboII	GAAGA	4 cut(s)	65, 95, 509, 571
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	9 cut(s)	115, 201, 223, 238, 337, 384, 432, 634, 771
MlyI	GAGTC	2 cut(s)	34, 731
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	27, 111, 403, 502, 558, 615, 843, 846
Mph1103I	ATGCAT	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	6 cut(s)	191, 222, 309, 378, 390, 774
MslI	CAYNNNNRTG	2 cut(s)	363, 824
MspR9I	CCNGG	2 cut(s)	734, 779
MunI	CAATTG	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	734, 779
MwoI	GCNNNNNNNGC	2 cut(s)	17, 856
NcoI	CCATGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	2 cut(s)	342, 470
NlaIII	CATG	5 cut(s)	113, 167, 587, 659, 845
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	2 cut(s)	113, 845
PaeI	GCATGC	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	350
PciI	ACATGT	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	576, 759
PleI	GAGTC	2 cut(s)	34, 731
PpsI	GAGTC	2 cut(s)	34, 731
PscI	ACATGT	1 cut(s)	841
PshAI	GACNNNNGTC	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	732, 777
PspGI	CCWGG	2 cut(s)	732, 777
PspPI	GGNCC	2 cut(s)	254, 419
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	86, 445
RsaNI	GTAC	2 cut(s)	85, 444
RseI	CAYNNNNRTG	2 cut(s)	363, 824
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	6 cut(s)	191, 222, 309, 378, 390, 774
SatI	GCNGC	2 cut(s)	575, 758
Sau3AI	GATC	2 cut(s)	342, 470
Sau96I	GGNCC	2 cut(s)	254, 419
SchI	GAGTC	2 cut(s)	34, 731
ScrFI	CCNGG	2 cut(s)	734, 779
SduI	GDGCHC	1 cut(s)	140
SexAI	ACCWGGT	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	345, 819, 837
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	2 cut(s)	254, 419
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	363, 824
SmlI	CTYRAG	2 cut(s)	42, 350
SmoI	CTYRAG	2 cut(s)	42, 350
SpeI	ACTAGT	1 cut(s)	446
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	9 cut(s)	115, 201, 223, 238, 337, 384, 432, 634, 771
SspMI	CTAG	4 cut(s)	132, 141, 447, 882
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	732, 777
StyI	CCWWGG	3 cut(s)	163, 518, 798
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	172, 351
TasI	AATT	9 cut(s)	115, 201, 223, 238, 337, 384, 432, 634, 771
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	6 cut(s)	191, 222, 309, 378, 390, 774
Tru9I	TTAA	6 cut(s)	191, 222, 309, 378, 390, 774
TscAI	CASTG	2 cut(s)	705, 820
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	2 cut(s)	574, 757
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	3 cut(s)	17, 65, 510
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	705, 820
VpaK11BI	GGWCC	2 cut(s)	254, 419
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	113, 845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	4 cut(s)	132, 141, 447, 882
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.