Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

82955 .. 83632

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgctagccaaggctggatggaggatctttcaaaatgaccctggtttgtgggccacaatttatagagaaaagtactttaaaaatgatgatctctttgacaaggattaccactatctaaaggattgttcgagtacctggaaaagtgtctcccatggagccgatttattgaaacgaggacttatttggagagttggagatggcaagaaaattaaattctggactgatatttggctgcctcctctaccactcatacactatgctcttcctggtgcctttattgatagcaatattactctatgctctttttgggacgctaatggttggaacattgacctgctattctcgcttcttccttctggtattgttaatcaagttgttcacattcctcctgggtttgatggttgtggagatgacattcaaatttggggttgcacgtcgaatggttctttctctgtaaagtctgcctatggtatcttttttaatgattatactgagaataactctccttggaaattcatctggagtctgtcgattcccccgaagctgaagacttttttatgggtgctctgtcatgggaagctcctgactaatgtgcagagagctagaagacatcttactcttgatgactcttgtcctatttgtcacacagccagtgagtcattatctcatcttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

225

Amino Acids

25.76

Weight (kDa)

7.62

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	3 cut(s)	212, 420, 512
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	74, 133
AgsI	TTSAA	3 cut(s)	32, 169, 419
AjiI	CACGTC	1 cut(s)	435
AjnI	CCWGG	4 cut(s)	40, 134, 265, 388
AluBI	AGCT	3 cut(s)	544, 580, 602
AluI	AGCT	3 cut(s)	544, 580, 602
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	3 cut(s)	212, 420, 512
AspS9I	GGNCC	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BbsI	GAAGAC	2 cut(s)	554, 613
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	3 cut(s)	12, 191, 392
BciT130I	CCWGG	4 cut(s)	42, 136, 267, 390
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	5, 603
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	4 cut(s)	42, 136, 267, 390
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	157, 271
BmrFI	CCNGG	4 cut(s)	42, 136, 267, 390
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	2 cut(s)	554, 613
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	541
BsaJI	CCNNGG	5 cut(s)	9, 40, 151, 389, 506
Bse1I	ACTGG	1 cut(s)	651
BseBI	CCWGG	4 cut(s)	42, 136, 267, 390
BseDI	CCNNGG	5 cut(s)	9, 40, 151, 389, 506
BseGI	GGATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	24, 88
Bsp19I	CCATGG	1 cut(s)	151
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	157, 271
BspMI	ACCTGC	1 cut(s)	342
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	5 cut(s)	9, 40, 151, 389, 506
BssMI	GATC	2 cut(s)	24, 88
BssT1I	CCWWGG	3 cut(s)	9, 151, 506
Bst2UI	CCWGG	4 cut(s)	42, 136, 267, 390
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	27, 91
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	24, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	4 cut(s)	42, 136, 267, 390
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSCI	CCNGG	4 cut(s)	40, 134, 265, 388
BstV1I	GCAGC	1 cut(s)	219
BstV2I	GAAGAC	2 cut(s)	554, 613
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	73, 132
CviAII	CATG	2 cut(s)	152, 572
CviJI	RGCY	9 cut(s)	8, 14, 53, 158, 232, 544, 580, 602, 650
CviKI_1	RGCY	9 cut(s)	8, 14, 53, 158, 232, 544, 580, 602, 650
CviQI	GTAC	2 cut(s)	73, 132
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	26, 90
DpnII	GATC	2 cut(s)	24, 88
DraI	TTTAAA	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	9, 151, 506
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	40, 134, 265, 388
EcoT14I	CCWWGG	3 cut(s)	9, 151, 506
ErhI	CCWWGG	3 cut(s)	9, 151, 506
FaeI	CATG	2 cut(s)	155, 575
FaiI	YATR	9 cut(s)	63, 153, 251, 258, 298, 468, 489, 559, 573
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	151, 571
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	2 cut(s)	5, 603
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	155, 575
HinfI	GANTC	4 cut(s)	523, 532, 626, 656
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188III	TCNNGA	4 cut(s)	217, 520, 583, 620
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	363
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	432, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	155, 575
Kzo9I	GATC	2 cut(s)	24, 88
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	155, 585
Lsp1109I	GCAGC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	5, 603
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	2 cut(s)	26, 90
MboI	GATC	2 cut(s)	24, 88
MboII	GAAGA	4 cut(s)	254, 341, 559, 618
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	5 cut(s)	57, 207, 212, 420, 512
MlyI	GAGTC	3 cut(s)	532, 620, 665
MmeI	TCCRAC	2 cut(s)	172, 302
MnlI	CCTC	5 cut(s)	15, 167, 246, 249, 396
MseI	TTAA	5 cut(s)	78, 210, 366, 480, 676
MspR9I	CCNGG	4 cut(s)	42, 136, 267, 390
MvaI	CCWGG	4 cut(s)	42, 136, 267, 390
MwoI	GCNNNNNNNGC	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	24, 88
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	155, 575
NlaIV	GGNNCC	2 cut(s)	157, 271
NmuCI	GTSAC	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	3 cut(s)	531, 620, 664
PpsI	GAGTC	3 cut(s)	531, 620, 664
PshAI	GACNNNNGTC	1 cut(s)	630
Psp6I	CCWGG	4 cut(s)	40, 134, 265, 388
PspGI	CCWGG	4 cut(s)	40, 134, 265, 388
PspN4I	GGNNCC	2 cut(s)	157, 271
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	2 cut(s)	74, 133
RsaNI	GTAC	2 cut(s)	73, 132
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	5 cut(s)	78, 210, 366, 480, 676
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	24, 88
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	3 cut(s)	532, 620, 665
ScrFI	CCNGG	4 cut(s)	42, 136, 267, 390
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	6 cut(s)	137, 336, 437, 546, 582, 604
Sse9I	AATT	5 cut(s)	57, 207, 212, 420, 512
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	5, 603
StyD4I	CCNGG	4 cut(s)	40, 134, 265, 388
StyI	CCWWGG	3 cut(s)	9, 151, 506
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	128, 437, 530
TasI	AATT	5 cut(s)	57, 207, 212, 420, 512
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	78, 210, 366, 480, 676
Tru9I	TTAA	5 cut(s)	78, 210, 366, 480, 676
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	658
XapI	RAATTY	3 cut(s)	212, 420, 512
XspI	CTAG	2 cut(s)	5, 603
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.