Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000387.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

54368 .. 55219

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000387.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgcttgctaaggctggttggaggttatttcaaaatgatactggtttgtgggcttcaatttatagagaaaaatatttgaaacgtggctatttgttcgaccaaaactttcaacaatctaaagactgctctagtacttggagaagtgttcttcatggtgtcaatcttctgagaaaaggtctaatatggagggttggtgatggtaggaaaattaagttttggactgatttgtggttccatccttctctacttatcagttatgtcctgtccgattctattattaatatcaaggctactgtctgtagcttttggaatgataatggttgggacttgaatttactttctgcttgtctccctactgatattactgatcaacttttgcgcattcctcctggttttgatggttgtggagatgatattcaaatctggggatgcacttccaatggttctttttctgtcaagtcagtttacaacatcttttttcaggactatgatcaaatgaactctccttggaaatttatttggaaaatgcaagttcccccaaagctcaagaccttcctatgggttctctgtcatggtaaacttctcaccaatgctcacagagttaaaaggaatctcaccgatgatgatacttgccctatatgccgctgcaatagtgagtccctttctcatcttttcaaagattgtcctgctgctcttaatgtgtggaattttttcaccttgcctcaacctgttaaatttactttttccatgagttgggaaggttggttacaggctaaccttttctgcaaagccaaatgcaatgctagaaatctatggtgctctacctttgctttcatatgctggttcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

283

Amino Acids

32.98

Weight (kDa)

8.9

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	1 cut(s)	643
AcsI	RAATTY	4 cut(s)	331, 512, 706, 734
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	558, 753
AgsI	TTSAA	7 cut(s)	32, 57, 79, 110, 331, 419, 676
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	303, 544
AluI	AGCT	2 cut(s)	303, 544
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	645, 689
ApoI	RAATTY	4 cut(s)	331, 512, 706, 734
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	206, 577, 607, 706
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	2 cut(s)	632, 676
BccI	CCATC	3 cut(s)	191, 243, 392
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	2 cut(s)	367, 490
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	3 cut(s)	129, 804, 850
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	3 cut(s)	643, 646, 690
BlsI	GCNGC	3 cut(s)	644, 647, 691
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	558, 753
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	805
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	235, 434
BseLI	CCNNNNNNNGG	2 cut(s)	558, 753
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	632, 676
BsiHKAI	GWGCWC	1 cut(s)	821
BslFI	GGGAC	2 cut(s)	338, 643
BslI	CCNNNNNNNGG	2 cut(s)	558, 753
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	338, 643
BsmI	GAATGC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	2 cut(s)	367, 490
BspACI	CCGC	1 cut(s)	643
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	2 cut(s)	367, 490
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	9, 167
BstF5I	GGATG	2 cut(s)	235, 434
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	2 cut(s)	370, 493
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	367, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	639
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	632, 676
BtsCI	GGATG	2 cut(s)	235, 434
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	3 cut(s)	152, 572, 748
CviJI	RGCY	8 cut(s)	14, 53, 87, 290, 303, 544, 773, 791
CviKI_1	RGCY	8 cut(s)	14, 53, 87, 290, 303, 544, 773, 791
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	9, 167
DpnI	GATC	2 cut(s)	369, 492
DpnII	GATC	2 cut(s)	367, 490
Eco130I	CCWWGG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	155, 575, 751
FaqI	GGGAC	2 cut(s)	338, 643
FatI	CATG	3 cut(s)	151, 571, 747
FauNDI	CATATG	1 cut(s)	836
FbaI	TGATCA	2 cut(s)	367, 490
Fnu4HI	GCNGC	3 cut(s)	643, 646, 690
FokI	GGATG	2 cut(s)	222, 441
Fsp4HI	GCNGC	3 cut(s)	643, 646, 690
FspBI	CTAG	3 cut(s)	129, 804, 850
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	643, 646, 690
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	155, 575, 751
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	269, 610, 656
HphI	GGTGA	4 cut(s)	206, 577, 607, 706
Hpy166II	GTNNAC	2 cut(s)	466, 578
Hpy188I	TCNGA	2 cut(s)	168, 268
Hpy188III	TCNNGA	2 cut(s)	482, 547
Hpy8I	GTNNAC	2 cut(s)	466, 578
HpyAV	CCTTC	3 cut(s)	249, 562, 752
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	5 cut(s)	432, 529, 648, 786, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	639
HpyF3I	CTNAG	2 cut(s)	9, 167
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	155, 575, 751
HspAI	GCGC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	367, 490
Kzo9I	GATC	2 cut(s)	367, 490
Lsp1109I	GCAGC	2 cut(s)	632, 676
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	129, 804, 850
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	765
MalI	GATC	2 cut(s)	369, 492
MboI	GATC	2 cut(s)	367, 490
MboII	GAAGA	2 cut(s)	140, 155
MhlI	GDGCHC	1 cut(s)	821
MluCI	AATT	6 cut(s)	57, 207, 331, 512, 706, 734
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	4 cut(s)	15, 180, 396, 732
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	5 cut(s)	210, 279, 603, 696, 732
MspA1I	CMGCKG	1 cut(s)	645
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	639
NdeI	CATATG	1 cut(s)	836
NdeII	GATC	2 cut(s)	367, 490
NlaIII	CATG	3 cut(s)	155, 575, 751
NlaIV	GGNNCC	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	380
PctI	GAATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	2 cut(s)	269, 610
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	3 cut(s)	644, 647, 691
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PshBI	ATTAAT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	5 cut(s)	210, 279, 603, 696, 732
SatI	GCNGC	3 cut(s)	643, 646, 690
Sau3AI	GATC	2 cut(s)	367, 490
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	6 cut(s)	57, 207, 331, 512, 706, 734
SsiI	CCGC	1 cut(s)	643
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	3 cut(s)	129, 804, 850
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	96
TasI	AATT	6 cut(s)	57, 207, 331, 512, 706, 734
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	269, 610
Tru1I	TTAA	5 cut(s)	210, 279, 603, 696, 732
Tru9I	TTAA	5 cut(s)	210, 279, 603, 696, 732
TseI	GCWGC	2 cut(s)	645, 689
TspDTI	ATGAA	4 cut(s)	140, 512, 823, 835
Van91I	CCANNNNNTGG	1 cut(s)	753
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	4 cut(s)	331, 512, 706, 734
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	3 cut(s)	129, 804, 850
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.