Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

7863401 .. 7873881

Gene Structure 10481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCGTCGCTTGCCAAGCTTTCTCTCACCGCCTCCTCCGCTCCTACATCCGCCTACCACAACTTCCTTGCTAACCTGCGCGCAATTTCATGCGGCCCTGTCGAAGCAGACCACCACCTCTCCATGGGAGCATGCATCGAAGCCTCGCAAGCTGTTATTGGAGATGTAGGTCCTTGTCGATGTTGGGTGATGCTTGTTGCGGTTTACTTACCCATGTTAATGGAACTTCCAATCACAATGTTTGCTGTGCTTACATTGGTGCTATTCAATCGATTTTCTGCTAAATCTCTTGCTCAAAGAATAGTAGATTGCAATCTGAAAGTTGTGATCACTTGCAAAGCTGTTAAAAGGGGTTCTAAGGTCATCCACCACAAGGATATAGTTGTTGCTGCCCTTATTGAATCATCCAAAAGTGGGGTTTGTGTAGATGTATGCTTAACTTATGAGAATGAATCTGCTTTGAAGAGGGAACTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGATGGCATACCTAAATATCCAACTACTTGTGCAGTGGAGTGGGCTGATGCAGAGGATCCACCTTTTGTGCTCTATATCAATGGGAGCACTGGGAAACCCTAGCCAAGCATTTGATGAACTATTAGGTGGAATTGAAACTCTAGCAATCGCAAAAGTCTTTGGGAATATAGTTTTCGCTTTATTGCTGGTTAGCTTTGTTGCATGTGCTGGTACCATAGTTTTTCTTTTGGTTGATTGCACTCCAGCTTCCCGAGACGGCCAGAAGCTACAGCTCGATTCAGATCATCGCCTAGATAACGAAAACTCAAAAAAGGGTCCGACGCGCCGCCACGAACGGTGGTCGGACGGCGGTCAACGCCGGTCAACCACCTCCGATGCAAAAGTCGTCAACTACAAACTTGTTCAAAATGAAAGGTATCCCAATGCTAAGCATAAGAAAGCCCGTGTTCATCAGTTTTGGAAAGCACCGAGGGAATGTGTCCTCAAGTTGAATACTGATGGTGCATTTTTACCATCAGTAGGGTATGGTGCAGTAGGAGGTGTTATTCGGACTGATCAAGGTGGCTTTGTTGCTGCTATAGTGCATAAGGTTAGTTATGTTACGGCAGCTTTACAAGTTGAGTTGTTGGCTATACGAGCCGGTATGGATTTGTGCCAAGCTATGATGCTTGAGGACGTAATTATTGAAAGTGATTGCTTAGTTGTCATTCAAGCTATAACATCATGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

413

Amino Acids

44.94

Weight (kDa)

8.65

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	334 - 411	1.7e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	2 cut(s)	81, 832
AciI	CCGC	7 cut(s)	30, 39, 51, 93, 200, 835, 858
AclWI	GGATC	2 cut(s)	559, 572
AcoI	YGGCCR	1 cut(s)	766
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	4 cut(s)	124, 373, 414, 1028
AgsI	TTSAA	8 cut(s)	268, 401, 463, 644, 914, 1000, 1196, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
Alw21I	GWGCWC	2 cut(s)	581, 598
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	2 cut(s)	559, 572
Ama87I	CYCGRG	1 cut(s)	759
AoxI	GGCC	2 cut(s)	94, 766
ApeKI	GCWGC	3 cut(s)	389, 1082, 1115
Asp718I	GGTACC	1 cut(s)	719
AspLEI	GCGC	3 cut(s)	81, 83, 834
AspS9I	GGNCC	3 cut(s)	95, 170, 824
AsuHPI	GGTGA	2 cut(s)	19, 199
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	2 cut(s)	170, 824
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BamHI	GGATCC	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	581, 598
BbvI	GCAGC	3 cut(s)	376, 1069, 1127
BccI	CCATC	3 cut(s)	505, 1001, 1030
BceAI	ACGGC	3 cut(s)	781, 871, 1128
BciVI	GTATCC	1 cut(s)	936
BclI	TGATCA	2 cut(s)	327, 1063
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	3 cut(s)	609, 650, 800
BfmI	CTRYAG	2 cut(s)	776, 1086
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	936
BisI	GCNGC	5 cut(s)	94, 390, 835, 1083, 1116
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	5 cut(s)	95, 391, 836, 1084, 1117
Bme18I	GGWCC	2 cut(s)	170, 824
BmeT110I	CYCGRG	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	95, 170, 824
BmiI	GGNNCC	3 cut(s)	566, 721, 825
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	144, 180, 546, 874, 1164
BmuI	ACTGGG	1 cut(s)	608
BoxI	GACNNNNGTC	1 cut(s)	858
BpmI	CTGGAG	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	977, 1199
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	2 cut(s)	312, 789
BsaJI	CCNNGG	2 cut(s)	123, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 373, 414, 1028
Bse118I	RCCGGY	2 cut(s)	867, 1148
Bse1I	ACTGG	1 cut(s)	603
Bse8I	GATNNNNATC	2 cut(s)	312, 789
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	123, 977
BseGI	GGATG	5 cut(s)	47, 363, 404, 496, 516
BseJI	GATNNNNATC	2 cut(s)	312, 789
BseLI	CCNNNNNNNGG	4 cut(s)	124, 373, 414, 1028
BseNI	ACTGG	1 cut(s)	603
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	376, 1069, 1127
BsgI	GTGCAG	2 cut(s)	560, 1059
Bsh1236I	CGCG	2 cut(s)	81, 832
BshFI	GGCC	2 cut(s)	96, 768
BshNI	GGYRCC	1 cut(s)	719
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	581, 598
BsiHKCI	CYCGRG	1 cut(s)	759
BsiSI	CCGG	2 cut(s)	868, 1149
BslI	CCNNNNNNNGG	4 cut(s)	124, 373, 414, 1028
BsmAI	GTCTC	1 cut(s)	756
BsmBI	CGTCTC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	96, 768
BsoBI	CYCGRG	1 cut(s)	759
Bsp1286I	GDGCHC	2 cut(s)	581, 598
Bsp143I	GATC	4 cut(s)	327, 564, 790, 1063
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	7 cut(s)	30, 39, 51, 93, 200, 835, 858
BspANI	GGCC	2 cut(s)	96, 768
BspDI	ATCGAT	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	81, 832
BspLI	GGNNCC	3 cut(s)	566, 721, 825
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	559, 572
BspT107I	GGYRCC	1 cut(s)	719
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	2 cut(s)	867, 1148
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	2 cut(s)	867, 1148
BssECI	CCNNGG	2 cut(s)	123, 977
BssHII	GCGCGC	1 cut(s)	79
BssMI	GATC	4 cut(s)	327, 564, 790, 1063
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	846
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	12, 81, 133, 150
BstDEI	CTNAG	3 cut(s)	357, 936, 1207
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	5 cut(s)	47, 363, 404, 496, 516
BstFNI	CGCG	2 cut(s)	81, 832
BstHHI	GCGC	3 cut(s)	81, 83, 834
BstKTI	GATC	4 cut(s)	330, 567, 793, 1066
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	4 cut(s)	327, 564, 790, 1063
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 38, 149, 864, 1145
BstNSI	RCATGY	2 cut(s)	135, 714
BstPAI	GACNNNNGTC	1 cut(s)	858
BstSFI	CTRYAG	2 cut(s)	776, 1086
BstUI	CGCG	2 cut(s)	81, 832
BstV1I	GCAGC	3 cut(s)	376, 1069, 1127
BstX2I	RGATCY	1 cut(s)	564
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	564
Bsu15I	ATCGAT	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	936
BsuRI	GGCC	2 cut(s)	96, 768
BsuTUI	ATCGAT	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	5 cut(s)	47, 363, 404, 496, 516
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	548, 596
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	4 cut(s)	12, 81, 133, 150
CfoI	GCGC	3 cut(s)	81, 83, 834
Cfr10I	RCCGGY	2 cut(s)	867, 1148
Cfr13I	GGNCC	3 cut(s)	95, 170, 824
ClaI	ATCGAT	1 cut(s)	271
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	6 cut(s)	90, 124, 132, 214, 711, 1233
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	3 cut(s)	357, 936, 1207
DpnI	GATC	4 cut(s)	329, 566, 792, 1065
DpnII	GATC	4 cut(s)	327, 564, 790, 1063
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	170, 824
Eco88I	CYCGRG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	6 cut(s)	93, 127, 135, 217, 714, 1236
FatI	CATG	6 cut(s)	89, 123, 131, 213, 710, 1232
FbaI	TGATCA	2 cut(s)	327, 1063
Fnu4HI	GCNGC	5 cut(s)	94, 390, 835, 1083, 1116
FokI	GGATG	5 cut(s)	34, 350, 391, 503, 523
Fsp4HI	GCNGC	5 cut(s)	94, 390, 835, 1083, 1116
FspBI	CTAG	3 cut(s)	609, 650, 800
GlaI	GCGC	3 cut(s)	80, 82, 833
GluI	GCNGC	5 cut(s)	94, 390, 835, 1083, 1116
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	96, 768
HapII	CCGG	2 cut(s)	868, 1149
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	3 cut(s)	81, 83, 834
Hin1II	CATG	6 cut(s)	93, 127, 135, 217, 714, 1236
Hin6I	GCGC	3 cut(s)	79, 81, 832
HinP1I	GCGC	3 cut(s)	79, 81, 832
HincII	GTYRAC	3 cut(s)	863, 873, 898
HindII	GTYRAC	3 cut(s)	863, 873, 898
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	3 cut(s)	401, 452, 785
HpaII	CCGG	2 cut(s)	868, 1149
HphI	GGTGA	2 cut(s)	19, 199
Hpy166II	GTNNAC	4 cut(s)	205, 863, 873, 898
Hpy188I	TCNGA	6 cut(s)	318, 790, 828, 853, 883, 1059
Hpy188III	TCNNGA	1 cut(s)	759
Hpy8I	GTNNAC	4 cut(s)	205, 863, 873, 898
Hpy99I	CGWCG	2 cut(s)	10, 832
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	846
HpyCH4IV	ACGT	1 cut(s)	1185
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 38, 149, 864, 1145
HpyF3I	CTNAG	3 cut(s)	357, 936, 1207
HpySE526I	ACGT	1 cut(s)	1185
Hsp92II	CATG	6 cut(s)	93, 127, 135, 217, 714, 1236
HspAI	GCGC	3 cut(s)	79, 81, 832
KpnI	GGTACC	1 cut(s)	723
Ksp22I	TGATCA	2 cut(s)	327, 1063
Kzo9I	GATC	4 cut(s)	327, 564, 790, 1063
LmnI	GCTCC	3 cut(s)	46, 128, 593
Lsp1109I	GCAGC	3 cut(s)	376, 1069, 1127
LweI	GCATC	5 cut(s)	144, 180, 546, 874, 1164
MaeI	CTAG	3 cut(s)	609, 650, 800
MaeII	ACGT	1 cut(s)	1185
MaeIII	GTNAC	1 cut(s)	1108
MalI	GATC	4 cut(s)	329, 566, 792, 1065
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	4 cut(s)	327, 564, 790, 1063
MboII	GAAGA	2 cut(s)	475, 496
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	581, 598
MluCI	AATT	4 cut(s)	84, 477, 639, 1188
MmeI	TCCRAC	3 cut(s)	553, 831, 851
Mph1103I	ATGCAT	1 cut(s)	137
MseI	TTAA	3 cut(s)	218, 345, 437
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	2 cut(s)	868, 1149
MvnI	CGCG	2 cut(s)	81, 832
MwoI	GCNNNNNNNGC	5 cut(s)	16, 38, 149, 864, 1145
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	327, 564, 790, 1063
NlaIII	CATG	6 cut(s)	93, 127, 135, 217, 714, 1236
NlaIV	GGNNCC	3 cut(s)	566, 721, 825
NsiI	ATGCAT	1 cut(s)	137
NspI	RCATGY	2 cut(s)	135, 714
PaeI	GCATGC	1 cut(s)	135
PauI	GCGCGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	401, 452, 785
PkrI	GCNGC	5 cut(s)	95, 391, 836, 1084, 1117
PpuMI	RGGWCCY	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	566, 721, 825
PspPI	GGNCC	3 cut(s)	95, 170, 824
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	564
PteI	GCGCGC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	218, 345, 437
SatI	GCNGC	5 cut(s)	94, 390, 835, 1083, 1116
Sau3AI	GATC	4 cut(s)	327, 564, 790, 1063
Sau96I	GGNCC	3 cut(s)	95, 170, 824
SduI	GDGCHC	2 cut(s)	581, 598
SfaNI	GCATC	5 cut(s)	144, 180, 546, 874, 1164
SfcI	CTRYAG	2 cut(s)	776, 1086
SinI	GGWCC	2 cut(s)	170, 824
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	992, 1178
SmoI	CTYRAG	2 cut(s)	992, 1178
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	4 cut(s)	84, 477, 639, 1188
SsiI	CCGC	7 cut(s)	30, 39, 51, 93, 200, 835, 858
SspMI	CTAG	3 cut(s)	609, 650, 800
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	846
TaiI	ACGT	1 cut(s)	1188
TaqI	TCGA	5 cut(s)	102, 138, 178, 271, 783
TasI	AATT	4 cut(s)	84, 477, 639, 1188
TauI	GCSGC	2 cut(s)	96, 837
TfiI	GAWTC	3 cut(s)	401, 452, 785
Tru1I	TTAA	3 cut(s)	218, 345, 437
Tru9I	TTAA	3 cut(s)	218, 345, 437
TscAI	CASTG	2 cut(s)	548, 603
TseI	GCWGC	3 cut(s)	389, 1082, 1115
TspDTI	ATGAA	5 cut(s)	78, 465, 639, 933, 947
TspRI	CASTG	2 cut(s)	548, 603
VpaK11BI	GGWCC	2 cut(s)	170, 824
XceI	RCATGY	2 cut(s)	135, 714
XspI	CTAG	3 cut(s)	609, 650, 800
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.