Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333359.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 533

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 532 bp

atgttagcaaaggctagttggaggatttttcaaggtgacaatggtctctggagctccatttataagtataaatacctagcgaatgtcaatattactggtattgactatcctcctccttctgggagctcaagcacgtggaggagcattgctcatggagcctctcttctaaggcaaggtcttatatggagaattggggatggcatgactgcaaagttttggattgatcattggctgggtacgtttcctctcattgatgttgctttgcctggttatttggctaacattgatgatactgttagtatcttttggaacaacaatggatgggacattgataaattacaaacttgtttgcctgagacatttattcaacagatcttgagcattcctcctgggtttgaggggtgtggccctgatattcaaatatggggatatacttctaatggtcgctttactgtcaaatcggcctacaatagcctttttgatatgtctgagtccaatctcttcaagtggaatttcatctggcatcttaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

177

Amino Acids

20.13

Weight (kDa)

5.83

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	511
AcvI	CACGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	32, 368, 419, 505
AjnI	CCWGG	2 cut(s)	265, 388
AluBI	AGCT	2 cut(s)	54, 126
AluI	AGCT	2 cut(s)	54, 126
Alw21I	GWGCWC	2 cut(s)	56, 128
Alw26I	GTCTC	2 cut(s)	50, 350
AoxI	GGCC	2 cut(s)	406, 462
ApoI	RAATTY	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	56, 128
BbrPI	CACGTG	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	56, 128
BccI	CCATC	2 cut(s)	191, 315
BciT130I	CCWGG	2 cut(s)	267, 390
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	50, 350
BfaI	CTAG	2 cut(s)	15, 77
BglII	AGATCT	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	267, 390
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	267, 390
BoxI	GACNNNNGTC	1 cut(s)	42
BplI	GAGNNNNNCTC	4 cut(s)	133, 165, 370, 402
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	112, 397
BsaAI	YACGTR	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	267, 390
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	202, 326
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	345, 480
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	102, 154
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	2 cut(s)	408, 464
BsiHKAI	GWGCWC	2 cut(s)	56, 128
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	50, 350
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	408, 464
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	56, 128
Bsp143I	GATC	2 cut(s)	223, 372
BspANI	GGCC	2 cut(s)	408, 464
BspCNI	CTCAG	2 cut(s)	346, 481
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	2 cut(s)	223, 372
Bst2UI	CCWGG	2 cut(s)	267, 390
Bst4CI	ACNGT	2 cut(s)	295, 454
Bst6I	CTCTTC	2 cut(s)	168, 506
BstBAI	YACGTR	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	167, 354, 489
BstF5I	GGATG	2 cut(s)	202, 326
BstKTI	GATC	2 cut(s)	226, 375
BstMAI	GTCTC	2 cut(s)	50, 350
BstMBI	GATC	2 cut(s)	223, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	267, 390
BstPAI	GACNNNNGTC	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	265, 388
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	408, 464
BtsCI	GGATG	2 cut(s)	202, 326
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	152, 202
CviJI	RGCY	9 cut(s)	14, 54, 126, 158, 232, 278, 408, 464, 474
CviKI_1	RGCY	9 cut(s)	14, 54, 126, 158, 232, 278, 408, 464, 474
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	167, 354, 489
DpnI	GATC	2 cut(s)	225, 374
DpnII	GATC	2 cut(s)	223, 372
Eam1104I	CTCTTC	2 cut(s)	168, 506
EarI	CTCTTC	2 cut(s)	168, 506
Ecl136II	GAGCTC	2 cut(s)	54, 126
Eco24I	GRGCYC	2 cut(s)	56, 128
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	2 cut(s)	54, 126
Eco72I	CACGTG	1 cut(s)	135
EcoICRI	GAGCTC	2 cut(s)	54, 126
EcoRII	CCWGG	2 cut(s)	265, 388
EcoT38I	GRGCYC	2 cut(s)	56, 128
FaeI	CATG	2 cut(s)	155, 205
FaiI	YATR	9 cut(s)	63, 69, 153, 182, 184, 203, 424, 432, 485
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	2 cut(s)	151, 201
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	2 cut(s)	209, 333
FriOI	GRGCYC	2 cut(s)	56, 128
FspBI	CTAG	2 cut(s)	15, 77
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	408, 464
Hin1II	CATG	2 cut(s)	155, 205
HinfI	GANTC	1 cut(s)	491
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	2 cut(s)	49, 376
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	295, 454
HpyCH4IV	ACGT	2 cut(s)	134, 239
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	167, 354, 489
HpySE526I	ACGT	2 cut(s)	134, 239
Hsp92II	CATG	2 cut(s)	155, 205
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 372
LmnI	GCTCC	5 cut(s)	51, 59, 123, 141, 155
MaeI	CTAG	2 cut(s)	15, 77
MaeII	ACGT	2 cut(s)	134, 239
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	225, 374
MboI	GATC	2 cut(s)	223, 372
MboII	GAAGA	2 cut(s)	155, 493
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	56, 128
MluCI	AATT	3 cut(s)	189, 335, 511
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	8 cut(s)	15, 120, 123, 132, 169, 255, 391, 396
MseI	TTAA	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	267, 390
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	2 cut(s)	267, 390
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	223, 372
NlaIII	CATG	2 cut(s)	155, 205
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	381
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	135
PshAI	GACNNNNGTC	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	63
Psp124BI	GAGCTC	2 cut(s)	56, 128
Psp6I	CCWGG	2 cut(s)	265, 388
PspCI	CACGTG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	265, 388
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SacI	GAGCTC	2 cut(s)	56, 128
SaqAI	TTAA	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	223, 372
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	267, 390
SduI	GDGCHC	2 cut(s)	56, 128
SetI	ASST	7 cut(s)	37, 56, 78, 128, 137, 178, 242
SmlI	CTYRAG	2 cut(s)	127, 376
SmoI	CTYRAG	2 cut(s)	127, 376
Sse9I	AATT	3 cut(s)	189, 335, 511
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	15, 77
SstI	GAGCTC	2 cut(s)	56, 128
StyD4I	CCNGG	2 cut(s)	265, 388
TaaI	ACNGT	2 cut(s)	295, 454
TaiI	ACGT	2 cut(s)	137, 242
TasI	AATT	3 cut(s)	189, 335, 511
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	505
XapI	RAATTY	1 cut(s)	511
XspI	CTAG	2 cut(s)	15, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.