Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50136849 .. 50143220

Gene Structure 6372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGAGGTTCAACTTCGACTTGGAGGAAACTAAACCGGAGCCGAGCCGGTCCGCCACCCCCAAAGACGAAGTCGAATGGGTCCCACTCCACCACCATCCGGTCTTCGCCTCCACCGCCGCCCCGGCCCACCAGCCCACCGACGATTCTCCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCCGACGACCTCTGCCTTCACCGGATCTCCGTCCGCCTCGGCGAGCCTGAGCCGACCTCCGTCTTCGCCGCTTCGCCCTCCAAGATACTGAAACCAGATGTGAAGCTGAACTTTGCTGTTAACAAAGTCTCCATCAATAGAAACGGGACGGCGATGCTCCTTTATGGTTCCGATGGTCTATGCATTATGTATCTTTACGGGCGTACTTCGTCCAGAGATGGTACCACAATTTGCAGGACTGTTACTGTTGGTTCACAAATATACTTGAGTGGAACCAATGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGATTATTTCATTTGTCTTCAGATCTTATTCAACCAGAGCAGGCGTATTATCTACAGCCTGTGCAACCAGGTAGATCCAGGAATGCCACATCAATTTGCCCAGTGGACTTTTCATTTGGTGGTGATCACTTGTGGGACTGTTTTAGTGTTTTCATTTTGTTCAGCGATGGTTCAATTTACATCCTTTGTCCAATTGTTCCATTTGGAAGTGTCTATAAATGGGAATCGATTGTAGATATATATAATGATGCTCAGACATTTGGCCTGAAGTCGCCCAACTCAACGGCTGTTAGTAATTCAAATCTGGCTATTTCTTGGTTGGAAGCAACATTTCCAGAAATTGCAGGGCAAACAACAGATGGAGCAGATCTATCTGTAATAAGAGCTCGTCCTTATGCTTTATTTGATGCATCACTCTCACTGCAGGGACCTTTGAGGAAAGTATCTCATGGTGAGGATGAAGCGGATTCAGCATTTCGGGGTGCAGAATGTGAAGGTCGAGCGGTTAGCTTTCTTTATAATTTAGTCAGCAAAGATTCAATTCTTGTGACTGCTTGGAGTGGTGGGCAACTGCAAATAGATGCTCTGGCTGATGAAATTCAACCGGTCTGGAATGTTGGTTGTCCTCCTCGCCTTCGTGTTGATTCCCATGACAATATTCATGGTCTTGCAATGATCTGTGAGTCAACCCCAGATAAGCTTTCAACTGTGAAGCTTGATCAACCACTTGATAGTACTCTTTGGTTGGGCCATCCTCCCCCTCTGTTGAGACTGGCTATTGTGGATCTGGCTCTGCCTAAGAAAGCAGGAAGTGATTCTCTTGTTATGATGTTTATTGATCCCCTCATGCTGGAAAGAATATACACCCTTCATGATGGAGGGATAGATTCAATAGTGTTGCATTATCTCCCATTTACAAGTCAGAACAGTGGCAAGAATGAGACCATGAGAACTCCTTCTGTGCATCCTGTCCTAAGTACTTGCCAGGGAGAATTCTCCTCACACTCTCCACTTTCTGGTTTTGTGTCATTATCAGATTCATTTGGGTATTCATGGATAGTGGCAGTCACTGCTTCTCAAGAATGTATTGTGCTAGAGATGAAAACCTTAAACCTGTTGCTTCCTCTTCATGTTGATACGGAGAAAAAATCCATTCTTCCGGAAGAGCCAAAAGAGAAAGATAAACCAGATATTATCATAAGCAAAGAACTCCTAGGTGGACCTAAGGTGGTTCTTGTTCCTCAGACATCACCAAATTTGCGTTCTGTTTCTGCTGATTCAATTGAAGGTCGATCAATGCTTCATGAATACTTCAAGCTTTTCCATGAAAATTATGTGGAGTATGCACACAAGGTTTACTTTGAACTCAAGCATCATGGGCCGCACTTGAAGAGGATAATCGATGACCAACATGGTCGTTTAGGTGGGGCAAAGCAGAGGCTTTTGCAAGTTGAGGAAAAGTACTCGGATTTGGAACACCGCATTAATGCTGCGGTGCAGATGCAGAATCATCTGGAGGAGCGCCTAAAACGCTTGCGGAGCTTACCCGGGGTTCATAAGAAACCACTTTCCACAGCTGAGCAGGACTTCAAATCTCAGCTCGACCAGTTTTCCGGGGTTGAGTTGGATGCATTACGCTCTACTGTTAATGCGTTAACTGCAAGGATGAAAAGACACGGACAATCACCTAAGGCCAATGTATCAAACCAAAAGAAGCTGGTATCAAGGAGGAAGGATCCTGTGCAAGAGTCACAAATCTCCCAGTTGAAATCGTGCCTAGAGAAAATATCACTGGTCAATGGTGAGAATTCGAAAAAGGTTAAGATTGTGGAATCTGCATTAAGAAGTCAAGAAAGCAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

808

Amino Acids

89.83

Weight (kDa)

6.19

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nup88	PF10168	29 - 227	1.6e-17	Nuclear pore component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 510
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	2 cut(s)	154, 1064
AccIII	TCCGGA	1 cut(s)	1720
AclWI	GGATC	6 cut(s)	236, 630, 1353, 1394, 2291, 2304
AcsI	RAATTY	5 cut(s)	537, 1158, 1553, 1816, 2368
AcuI	CTGAAG	2 cut(s)	564, 848
AfaI	GTAC	5 cut(s)	409, 427, 1297, 1540, 2024
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
AgeI	ACCGGT	1 cut(s)	1165
AjnI	CCWGG	4 cut(s)	170, 628, 638, 1545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1807, 1839
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	3 cut(s)	337, 1324, 1496
AlwI	GGATC	6 cut(s)	236, 630, 1353, 1394, 2291, 2304
AlwNI	CAGNNNCTG	1 cut(s)	1631
Ama87I	CYCGRG	1 cut(s)	2108
Aor13HI	TCCGGA	1 cut(s)	1720
AoxI	GGCC	5 cut(s)	123, 823, 1309, 1940, 2253
ApeKI	GCWGC	2 cut(s)	2051, 2418
ApoI	RAATTY	5 cut(s)	537, 1158, 1553, 1816, 2368
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 659, 691
AseI	ATTAAT	1 cut(s)	2046
AsiGI	ACCGGT	1 cut(s)	1165
Asp700I	GAANNNNTTC	3 cut(s)	541, 1375, 1516
Asp718I	GGTACC	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	1774
AspLEI	GCGC	1 cut(s)	2085
AspS9I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
AsuC2I	CCSGG	4 cut(s)	122, 2109, 2110, 2176
AsuHPI	GGTGA	6 cut(s)	215, 695, 1025, 1803, 2238, 2375
AsuII	TTCGAA	1 cut(s)	2372
AvaI	CYCGRG	1 cut(s)	2108
AvaII	GGWCC	4 cut(s)	48, 79, 989, 1781
AvrII	CCTAGG	1 cut(s)	1774
AxyI	CCTNAGG	2 cut(s)	1785, 2250
BamHI	GGATCC	1 cut(s)	2296
BanI	GGYRCC	2 cut(s)	425, 510
BanII	GRGCYC	1 cut(s)	949
BbsI	GAAGAC	3 cut(s)	94, 259, 570
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	1 cut(s)	2038
BccI	CCATC	8 cut(s)	102, 344, 371, 416, 722, 914, 1320, 1430
BceAI	ACGGC	2 cut(s)	369, 861
BciT130I	CCWGG	4 cut(s)	172, 630, 640, 1547
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	2 cut(s)	685, 1279
BcnI	CCSGG	4 cut(s)	122, 2109, 2110, 2176
BcoDI	GTCTC	3 cut(s)	337, 1324, 1496
BfaI	CTAG	3 cut(s)	1655, 1775, 2339
BfmI	CTRYAG	2 cut(s)	614, 983
BfoI	RGCGCY	1 cut(s)	2086
BfuI	GTATCC	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	122
BglII	AGATCT	2 cut(s)	583, 928
BisI	GCNGC	6 cut(s)	117, 152, 273, 1943, 2052, 2419
BlnI	CCTAGG	1 cut(s)	1774
BlpI	GCTNAGC	1 cut(s)	2139
BlsI	GCNGC	6 cut(s)	118, 153, 274, 1944, 2053, 2420
BmcAI	AGTACT	3 cut(s)	1297, 1540, 2024
Bme1390I	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2176
Bme18I	GGWCC	4 cut(s)	48, 79, 989, 1781
BmeT110I	CYCGRG	1 cut(s)	2108
BmgT120I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
BmrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2176
BmrI	ACTGGG	2 cut(s)	656, 2317
BmsI	GCATC	9 cut(s)	348, 799, 958, 980, 1132, 1534, 1942, 2052, 2179
BmuI	ACTGGG	2 cut(s)	656, 2317
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	3 cut(s)	94, 259, 570
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	2096
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	2139
Bpu14I	TTCGAA	1 cut(s)	2372
BpuEI	CTTGAG	3 cut(s)	490, 1623, 1913
BpuMI	CCSGG	4 cut(s)	122, 2109, 2110, 2176
Bsa29I	ATCGAT	2 cut(s)	788, 1962
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	1496
BsaJI	CCNNGG	8 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109, 2175
BsaWI	WCCGGW	5 cut(s)	34, 97, 225, 1165, 1720
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
Bse118I	RCCGGY	2 cut(s)	45, 1165
Bse1I	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
Bse21I	CCTNAGG	2 cut(s)	1785, 2250
Bse3DI	GCAATG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	1720
BseBI	CCWGG	4 cut(s)	172, 630, 640, 1547
BseCI	ATCGAT	2 cut(s)	788, 1962
BseDI	CCNNGG	8 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109, 2175
BseGI	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
BseMI	GCAATG	1 cut(s)	1239
BseMII	CTCAG	6 cut(s)	169, 243, 827, 1817, 2130, 2171
BseNI	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
BseRI	GAGGAG	3 cut(s)	1179, 1549, 2093
BseXI	GCAGC	1 cut(s)	2038
BsgI	GTGCAG	2 cut(s)	1065, 2078
BshFI	GGCC	5 cut(s)	125, 825, 1311, 1942, 2255
BshNI	GGYRCC	2 cut(s)	425, 510
BshTI	ACCGGT	1 cut(s)	1165
BshVI	ATCGAT	2 cut(s)	788, 1962
BsiHKAI	GWGCWC	1 cut(s)	949
BsiHKCI	CYCGRG	1 cut(s)	2108
BsiSI	CCGG	9 cut(s)	35, 46, 98, 122, 226, 1166, 1721, 2109, 2175
BslFI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1002
BslI	CCNNNNNNNGG	3 cut(s)	97, 1411, 1577
BsmAI	GTCTC	3 cut(s)	337, 1324, 1496
BsmFI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1002
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	5 cut(s)	125, 825, 1311, 1942, 2255
Bso31I	GGTCTC	1 cut(s)	1496
BsoBI	CYCGRG	1 cut(s)	2108
Bsp119I	TTCGAA	1 cut(s)	2372
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp13I	TCCGGA	1 cut(s)	1720
Bsp1720I	GCTNAGC	1 cut(s)	2139
BspANI	GGCC	5 cut(s)	125, 825, 1311, 1942, 2255
BspCNI	CTCAG	6 cut(s)	168, 244, 826, 1816, 2131, 2170
BspDI	ATCGAT	2 cut(s)	788, 1962
BspEI	TCCGGA	1 cut(s)	1720
BspHI	TCATGA	2 cut(s)	1432, 1864
BspMAI	CTGCAG	1 cut(s)	987
BspPI	GGATC	6 cut(s)	236, 630, 1353, 1394, 2291, 2304
BspQI	GCTCTTC	1 cut(s)	1719
BspT104I	TTCGAA	1 cut(s)	2372
BspT107I	GGYRCC	2 cut(s)	425, 510
BspTNI	GGTCTC	1 cut(s)	1496
BsrBI	CCGCTC	2 cut(s)	154, 1064
BsrDI	GCAATG	1 cut(s)	1239
BsrFI	RCCGGY	2 cut(s)	45, 1165
BsrI	ACTGG	5 cut(s)	662, 1338, 2167, 2323, 2358
BssAI	RCCGGY	2 cut(s)	45, 1165
BssECI	CCNNGG	8 cut(s)	120, 171, 241, 1546, 1774, 2108, 2109, 2175
BssT1I	CCWWGG	1 cut(s)	1774
Bst2UI	CCWGG	4 cut(s)	172, 630, 640, 1547
Bst4CI	ACNGT	6 cut(s)	445, 451, 701, 1270, 1490, 2206
Bst6I	CTCTTC	3 cut(s)	1692, 1719, 1946
BstAPI	GCANNNNNTGC	1 cut(s)	1631
BstBI	TTCGAA	1 cut(s)	2372
BstC8I	GCNNGC	3 cut(s)	248, 603, 2096
BstF5I	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BstH2I	RGCGCY	1 cut(s)	2086
BstHHI	GCGC	1 cut(s)	2085
BstMAI	GTCTC	3 cut(s)	337, 1324, 1496
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 122, 1031, 1631, 1939, 2091, 2100, 2219
BstNI	CCWGG	4 cut(s)	172, 630, 640, 1547
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	8 cut(s)	120, 170, 628, 638, 1545, 2107, 2108, 2174
BstSFI	CTRYAG	2 cut(s)	614, 983
BstV1I	GCAGC	1 cut(s)	2038
BstV2I	GAAGAC	3 cut(s)	94, 259, 570
BstX2I	RGATCY	6 cut(s)	228, 583, 635, 928, 1345, 2296
BstYI	RGATCY	6 cut(s)	228, 583, 635, 928, 1345, 2296
Bsu15I	ATCGAT	2 cut(s)	788, 1962
Bsu36I	CCTNAGG	2 cut(s)	1785, 2250
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	5 cut(s)	125, 825, 1311, 1942, 2255
BsuTUI	ATCGAT	2 cut(s)	788, 1962
BtgZI	GCGATG	2 cut(s)	371, 741
BtsCI	GGATG	7 cut(s)	94, 741, 1024, 1312, 1525, 2194, 2232
BtsI	GCAGTG	3 cut(s)	526, 980, 1629
BtsIMutI	CAGTG	6 cut(s)	526, 669, 980, 1495, 1629, 2351
Cac8I	GCNNGC	3 cut(s)	248, 603, 2096
CaiI	CAGNNNCTG	1 cut(s)	1631
CciI	TCATGA	2 cut(s)	1432, 1864
CfoI	GCGC	1 cut(s)	2085
Cfr10I	RCCGGY	2 cut(s)	45, 1165
Cfr13I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
Cfr9I	CCCGGG	1 cut(s)	2108
ClaI	ATCGAT	2 cut(s)	788, 1962
CpoI	CGGWCCG	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
CspAI	ACCGGT	1 cut(s)	1165
CspI	CGGWCCG	1 cut(s)	48
CviQI	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
Eam1104I	CTCTTC	3 cut(s)	1692, 1719, 1946
EarI	CTCTTC	3 cut(s)	1692, 1719, 1946
EciI	GGCGGA	3 cut(s)	40, 138, 227
Ecl136II	GAGCTC	1 cut(s)	947
Eco130I	CCWWGG	1 cut(s)	1774
Eco24I	GRGCYC	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	1496
Eco47I	GGWCC	4 cut(s)	48, 79, 989, 1781
Eco53kI	GAGCTC	1 cut(s)	947
Eco57I	CTGAAG	2 cut(s)	564, 848
Eco81I	CCTNAGG	2 cut(s)	1785, 2250
Eco88I	CYCGRG	1 cut(s)	2108
EcoICRI	GAGCTC	1 cut(s)	947
EcoO109I	RGGNCCY	2 cut(s)	79, 989
EcoRI	GAATTC	3 cut(s)	537, 1553, 2368
EcoRII	CCWGG	4 cut(s)	170, 628, 638, 1545
EcoT14I	CCWWGG	1 cut(s)	1774
EcoT22I	ATGCAT	3 cut(s)	389, 973, 2194
EcoT38I	GRGCYC	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	1774
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1904, 1936
FaqI	GGGAC	6 cut(s)	65, 188, 215, 364, 710, 1002
FauNDI	CATATG	1 cut(s)	2423
FbaI	TGATCA	2 cut(s)	685, 1279
Fnu4HI	GCNGC	6 cut(s)	117, 152, 273, 1943, 2052, 2419
FokI	GGATG	7 cut(s)	81, 728, 1031, 1299, 1512, 2201, 2239
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	6 cut(s)	117, 152, 273, 1943, 2052, 2419
FspBI	CTAG	3 cut(s)	1655, 1775, 2339
GlaI	GCGC	1 cut(s)	2084
GluI	GCNGC	6 cut(s)	117, 152, 273, 1943, 2052, 2419
GsuI	CTGGAG	1 cut(s)	2096
HaeII	RGCGCY	1 cut(s)	2086
HaeIII	GGCC	5 cut(s)	125, 825, 1311, 1942, 2255
HapII	CCGG	9 cut(s)	35, 46, 98, 122, 226, 1166, 1721, 2109, 2175
HhaI	GCGC	1 cut(s)	2085
Hin6I	GCGC	1 cut(s)	2083
HinP1I	GCGC	1 cut(s)	2083
HincII	GTYRAC	3 cut(s)	325, 1248, 2217
HindII	GTYRAC	3 cut(s)	325, 1248, 2217
HindIII	AAGCTT	3 cut(s)	1259, 1274, 1877
HpaI	GTTAAC	2 cut(s)	325, 2217
HpaII	CCGG	9 cut(s)	35, 46, 98, 122, 226, 1166, 1721, 2109, 2175
HphI	GGTGA	6 cut(s)	215, 695, 1025, 1803, 2238, 2375
Hpy166II	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2217
Hpy188III	TCNNGA	9 cut(s)	417, 896, 1171, 1433, 1640, 1721, 1865, 2075, 2411
Hpy8I	GTNNAC	7 cut(s)	325, 458, 667, 1248, 1781, 1918, 2217
Hpy99I	CGWCG	2 cut(s)	143, 212
HpyAV	CCTTC	7 cut(s)	230, 1049, 1205, 1439, 1527, 1841, 2287
HpyCH4III	ACNGT	6 cut(s)	445, 451, 701, 1270, 1490, 2206
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 122, 1031, 1631, 1939, 2091, 2100, 2219
HspAI	GCGC	1 cut(s)	2083
KflI	GGGWCCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	1720
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	685, 1279
KspAI	GTTAAC	2 cut(s)	325, 2217
LguI	GCTCTTC	1 cut(s)	1719
LmnI	GCTCC	6 cut(s)	37, 179, 366, 923, 2080, 2100
Lsp1109I	GCAGC	1 cut(s)	2038
LweI	GCATC	9 cut(s)	348, 799, 958, 980, 1132, 1534, 1942, 2052, 2179
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	3 cut(s)	1655, 1775, 2339
MaeIII	GTNAC	4 cut(s)	445, 1108, 1627, 2310
MbiI	CCGCTC	2 cut(s)	154, 1064
MboII	GAAGA	8 cut(s)	94, 259, 537, 570, 1679, 1709, 1736, 1963
MfeI	CAATTG	2 cut(s)	753, 1842
MflI	RGATCY	6 cut(s)	228, 583, 635, 928, 1345, 2296
MhlI	GDGCHC	1 cut(s)	949
MlyI	GAGTC	3 cut(s)	197, 1253, 2318
MmeI	TCCRAC	3 cut(s)	231, 861, 2166
Mph1103I	ATGCAT	3 cut(s)	389, 973, 2194
MroI	TCCGGA	1 cut(s)	1720
MroXI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
MseI	TTAA	7 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402
MspA1I	CMGCKG	1 cut(s)	2138
MspI	CCGG	9 cut(s)	35, 46, 98, 122, 226, 1166, 1721, 2109, 2175
MspR9I	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2176
MunI	CAATTG	2 cut(s)	753, 1842
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	172, 630, 640, 1547
MwoI	GCNNNNNNNGC	8 cut(s)	113, 122, 1031, 1631, 1939, 2091, 2100, 2219
NciI	CCSGG	4 cut(s)	122, 2109, 2110, 2176
NdeI	CATATG	1 cut(s)	2423
NmeAIII	GCCGAG	2 cut(s)	66, 222
NmuCI	GTSAC	3 cut(s)	1108, 1627, 2310
NsiI	ATGCAT	3 cut(s)	389, 973, 2194
NspV	TTCGAA	1 cut(s)	2372
PagI	TCATGA	2 cut(s)	1432, 1864
PciSI	GCTCTTC	1 cut(s)	1719
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	1577
PfoI	TCCNGGA	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	1165
PkrI	GCNGC	6 cut(s)	118, 153, 274, 1944, 2053, 2420
PleI	GAGTC	3 cut(s)	197, 1252, 2317
PpsI	GAGTC	3 cut(s)	197, 1252, 2317
PpuMI	RGGWCCY	2 cut(s)	79, 989
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	2046
PsiI	TTATAA	1 cut(s)	1080
Psp124BI	GAGCTC	1 cut(s)	949
Psp5II	RGGWCCY	2 cut(s)	79, 989
Psp6I	CCWGG	4 cut(s)	170, 628, 638, 1545
PspGI	CCWGG	4 cut(s)	170, 628, 638, 1545
PspPI	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
PspPPI	RGGWCCY	2 cut(s)	79, 989
PstI	CTGCAG	1 cut(s)	987
PstNI	CAGNNNCTG	1 cut(s)	1631
PsuI	RGATCY	6 cut(s)	228, 583, 635, 928, 1345, 2296
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	2138
RsaI	GTAC	5 cut(s)	409, 427, 1297, 1540, 2024
RsaNI	GTAC	5 cut(s)	408, 426, 1296, 1539, 2023
Rsr2I	CGGWCCG	1 cut(s)	48
RsrII	CGGWCCG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	949
SapI	GCTCTTC	1 cut(s)	1719
SaqAI	TTAA	7 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402
SatI	GCNGC	6 cut(s)	117, 152, 273, 1943, 2052, 2419
Sau96I	GGNCC	7 cut(s)	48, 79, 124, 989, 1309, 1781, 1940
ScaI	AGTACT	3 cut(s)	1297, 1540, 2024
SchI	GAGTC	3 cut(s)	197, 1253, 2318
ScrFI	CCNGG	8 cut(s)	122, 172, 630, 640, 1547, 2109, 2110, 2176
SduI	GDGCHC	1 cut(s)	949
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	9 cut(s)	348, 799, 958, 980, 1132, 1534, 1942, 2052, 2179
SfcI	CTRYAG	2 cut(s)	614, 983
SfuI	TTCGAA	1 cut(s)	2372
SinI	GGWCC	4 cut(s)	48, 79, 989, 1781
SmaI	CCCGGG	1 cut(s)	2110
SmlI	CTYRAG	3 cut(s)	469, 1638, 1928
SmoI	CTYRAG	3 cut(s)	469, 1638, 1928
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	3 cut(s)	1655, 1775, 2339
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	8 cut(s)	120, 170, 628, 638, 1545, 2107, 2108, 2174
StyI	CCWWGG	1 cut(s)	1774
TaaI	ACNGT	6 cut(s)	445, 451, 701, 1270, 1490, 2206
TaqI	TCGA	8 cut(s)	15, 72, 788, 1060, 1852, 1962, 2163, 2372
TatI	WGTACW	3 cut(s)	1295, 1538, 2022
TauI	GCSGC	4 cut(s)	119, 154, 275, 1945
Tru1I	TTAA	7 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402
Tru9I	TTAA	7 cut(s)	324, 1670, 2046, 2208, 2216, 2382, 2402
TscAI	CASTG	6 cut(s)	526, 669, 987, 1495, 1636, 2358
TseFI	GTSAC	3 cut(s)	1108, 1627, 2310
TseI	GCWGC	2 cut(s)	2051, 2418
Tsp45I	GTSAC	3 cut(s)	1108, 1627, 2310
TspGWI	ACGGA	6 cut(s)	192, 223, 253, 505, 1715, 2253
TspMI	CCCGGG	1 cut(s)	2108
TspRI	CASTG	6 cut(s)	526, 669, 987, 1495, 1636, 2358
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	4 cut(s)	48, 79, 989, 1781
VspI	ATTAAT	1 cut(s)	2046
XapI	RAATTY	5 cut(s)	537, 1158, 1553, 1816, 2368
XmaI	CCCGGG	1 cut(s)	2108
XmaJI	CCTAGG	1 cut(s)	1774
XmnI	GAANNNNTTC	3 cut(s)	541, 1375, 1516
XspI	CTAG	3 cut(s)	1655, 1775, 2339
ZrmI	AGTACT	3 cut(s)	1297, 1540, 2024
Zsp2I	ATGCAT	3 cut(s)	389, 973, 2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.