Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

67364006 .. 67365275

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTTGCAAAAGCTGGATGGAGACTCCACAATAATGATTCTGGATTGTGGGCTACAATTTACAGGGAAAAATACCTTCGTAGTGCCAATCTTGTTGATGACTCTTATGTTGTCCCCAAGGATTGTTCCAATACATGGAGAAGTATTGTTCATGGGGCTAATCTTCTTACACAAGGCTTGACCTGGAGAGTTGGAGATGGAAGACGAAATAATTTCTGGTTCGATATGTGGCTGCCTCCTTTTTCCCTTCAGAATCATATTCTTCCTTCTGCCTCCTTTAATCCTATTGATAAAATTTCTAACTTTTGGGATGACCATGGTTGGGACATTGATAAATTAATTGCTTGTCTTCCTCAACATATTATCGACCAGATTATTCGTATTCCTCCTGCCTTTGATGGATGTGGAGAAGATAAACAAATTTGGGGGTATACATCTAATGGTATCTTTAGTGTAAAGTCTGCTTATGCTATTTTTCTTGCATCCTATTGTCAGGATAACTCTCCATGGAAATTCATTTGGAAATTGCAGCTTCCTCCCAAATTGAAGACATTCACATGGATTGTTTTCCATGGCAAACTCTTAACAAATGTTCAAAGAGCCAAAAGGAATTTGACCAATGACAACTGTTGTCCTTTATGCCATCAAGCTCTTGAGACTCTTGCTCACCTATTTCGAGATTGCCCTGCTGCTCAATTGATATGGAATTCTTTCAATATACCATCTTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

244

Amino Acids

28.19

Weight (kDa)

8.56

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	150 - 235	2.3e-22	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	431
AcsI	RAATTY	5 cut(s)	294, 420, 512, 610, 706
AcuI	CTGAAG	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	135, 322
AgsI	TTSAA	3 cut(s)	547, 596, 715
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	14, 532, 650
AluI	AGCT	3 cut(s)	14, 532, 650
Alw26I	GTCTC	2 cut(s)	16, 650
ApeKI	GCWGC	3 cut(s)	232, 529, 689
ApoI	RAATTY	5 cut(s)	294, 420, 512, 610, 706
AseI	ATTAAT	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	551, 710
AsuHPI	GGTGA	1 cut(s)	659
BbsI	GAAGAC	3 cut(s)	208, 341, 554
BbvI	GCAGC	3 cut(s)	219, 541, 676
BccI	CCATC	5 cut(s)	12, 191, 392, 651, 730
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	16, 650
BisI	GCNGC	3 cut(s)	233, 530, 690
BlsI	GCNGC	3 cut(s)	234, 531, 691
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	491
BpiI	GAAGAC	3 cut(s)	208, 341, 554
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	4 cut(s)	117, 316, 506, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 322
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	117, 316, 506, 571
BseGI	GGATG	4 cut(s)	23, 316, 407, 482
BseLI	CCNNNNNNNGG	2 cut(s)	135, 322
BseXI	GCAGC	3 cut(s)	219, 541, 676
BslFI	GGGAC	2 cut(s)	98, 338
BslI	CCNNNNNNNGG	2 cut(s)	135, 322
BsmAI	GTCTC	2 cut(s)	16, 650
BsmFI	GGGAC	2 cut(s)	98, 338
Bsp19I	CCATGG	3 cut(s)	316, 506, 571
BssECI	CCNNGG	4 cut(s)	117, 316, 506, 571
BssNAI	GTATAC	1 cut(s)	432
BssT1I	CCWWGG	4 cut(s)	117, 316, 506, 571
Bst1107I	GTATAC	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	3 cut(s)	316, 506, 571
BstF5I	GGATG	4 cut(s)	23, 316, 407, 482
BstMAI	GTCTC	2 cut(s)	16, 650
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	219, 541, 676
BstV2I	GAAGAC	3 cut(s)	208, 341, 554
BstZ17I	GTATAC	1 cut(s)	432
BtgI	CCRYGG	3 cut(s)	316, 506, 571
BtsCI	GGATG	4 cut(s)	23, 316, 407, 482
Cac8I	GCNNGC	1 cut(s)	6
CviAII	CATG	6 cut(s)	135, 152, 317, 507, 558, 572
CviJI	RGCY	8 cut(s)	14, 53, 158, 177, 232, 532, 602, 650
CviKI_1	RGCY	8 cut(s)	14, 53, 158, 177, 232, 532, 602, 650
Eco130I	CCWWGG	4 cut(s)	117, 316, 506, 571
Eco57I	CTGAAG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	4 cut(s)	117, 316, 506, 571
ErhI	CCWWGG	4 cut(s)	117, 316, 506, 571
FaeI	CATG	6 cut(s)	138, 155, 320, 510, 561, 575
FaqI	GGGAC	2 cut(s)	98, 338
FatI	CATG	6 cut(s)	134, 151, 316, 506, 557, 571
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	3 cut(s)	233, 530, 690
FokI	GGATG	4 cut(s)	30, 323, 414, 469
Fsp4HI	GCNGC	3 cut(s)	233, 530, 690
GluI	GCNGC	3 cut(s)	233, 530, 690
GsuI	CTGGAG	1 cut(s)	205
Hin1II	CATG	6 cut(s)	138, 155, 320, 510, 561, 575
HinfI	GANTC	5 cut(s)	24, 38, 101, 253, 658
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	42, 494, 653, 677
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	3 cut(s)	86, 257, 276
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4V	TGCA	3 cut(s)	8, 482, 529
Hsp92II	CATG	6 cut(s)	138, 155, 320, 510, 561, 575
LpnPI	CCDG	9 cut(s)	27, 49, 169, 196, 202, 383, 402, 479, 699
Lsp1109I	GCAGC	3 cut(s)	219, 541, 676
LweI	GCATC	1 cut(s)	491
MboII	GAAGA	6 cut(s)	155, 213, 254, 341, 422, 559
MfeI	CAATTG	1 cut(s)	695
MlyI	GAGTC	3 cut(s)	18, 95, 652
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	246, 283, 363, 396, 546
MroXI	GAANNNNTTC	2 cut(s)	551, 710
MseI	TTAA	3 cut(s)	279, 338, 584
MslI	CAYNNNNRTG	2 cut(s)	33, 556
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	184
NcoI	CCATGG	3 cut(s)	316, 506, 571
NlaIII	CATG	6 cut(s)	138, 155, 320, 510, 561, 575
PdmI	GAANNNNTTC	2 cut(s)	551, 710
PfeI	GAWTC	2 cut(s)	38, 253
PflMI	CCANNNNNTGG	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	234, 531, 691
PleI	GAGTC	3 cut(s)	18, 95, 652
PpsI	GAGTC	3 cut(s)	18, 95, 652
PshBI	ATTAAT	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
RseI	CAYNNNNRTG	2 cut(s)	33, 556
SaqAI	TTAA	3 cut(s)	279, 338, 584
SatI	GCNGC	3 cut(s)	233, 530, 690
SchI	GAGTC	3 cut(s)	18, 95, 652
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	6 cut(s)	16, 78, 185, 534, 652, 672
SfaNI	GCATC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	33, 556
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	4 cut(s)	117, 316, 506, 571
TaaI	ACNGT	1 cut(s)	629
TaqI	TCGA	3 cut(s)	222, 366, 676
TfiI	GAWTC	2 cut(s)	38, 253
Tru1I	TTAA	3 cut(s)	279, 338, 584
Tru9I	TTAA	3 cut(s)	279, 338, 584
TseI	GCWGC	3 cut(s)	232, 529, 689
TspDTI	ATGAA	2 cut(s)	140, 505
Van91I	CCANNNNNTGG	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	5 cut(s)	294, 420, 512, 610, 706
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	2 cut(s)	551, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.