Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010822.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

1695 .. 2282

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010822.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgaatcaggcaatgctagccaaggctggatggaggatctttcaaaatgaccctggtttgtgggccacaatttatagagaaaagtactttaaaaatgatgatctctttgacaaggattaccactatccaaaggattgttcgagtacatggaaaagtgtctcccatggagccgatttattgaaacgaggacttatttggagagttggagatggtaagaaaattaaattctggactgatatttggctgcctcctctaccactcataaactatgctcttcctggtgcctttattgatagcaatattactctatgctctttttgggatgctaatggttggaacattgacctgctattctcgcttcttccttctggtattgttaatcaaattgttcacattcctcctgggtttgatggttgtggagatgacattcaaatttggggttgcacttcgaatggttctttctctgtaaagtctgcttatggtatcttttttaatgattatactgagaataactctccttggaaattcacgaaagctcatccctacaacagtgtgcaggttttgagcatgtggtcgggaagcgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

195

Amino Acids

22.19

Weight (kDa)

6.39

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	354, 547
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	3 cut(s)	224, 432, 524
AfaI	GTAC	2 cut(s)	86, 145
AgsI	TTSAA	3 cut(s)	44, 181, 431
AjnI	CCWGG	3 cut(s)	52, 277, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	224, 432, 524
AspS9I	GGNCC	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	3 cut(s)	24, 203, 404
BciT130I	CCWGG	3 cut(s)	54, 279, 402
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	354, 547
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	54, 279, 402
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	169, 283
BmrFI	CCNGG	3 cut(s)	54, 279, 402
BmsI	GCATC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu14I	TTCGAA	1 cut(s)	449
BsaJI	CCNNGG	5 cut(s)	21, 52, 163, 401, 518
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	54, 279, 402
BseDI	CCNNGG	5 cut(s)	21, 52, 163, 401, 518
BseGI	GGATG	3 cut(s)	35, 328, 538
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	36, 100
Bsp19I	CCATGG	1 cut(s)	163
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	169, 283
BspMI	ACCTGC	2 cut(s)	354, 547
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	5 cut(s)	21, 52, 163, 401, 518
BssMI	GATC	2 cut(s)	36, 100
BssT1I	CCWWGG	3 cut(s)	21, 163, 518
Bst2UI	CCWGG	3 cut(s)	54, 279, 402
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	35, 328, 538
BstKTI	GATC	2 cut(s)	39, 103
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	36, 100
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 355
BstNI	CCWGG	3 cut(s)	54, 279, 402
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	3 cut(s)	52, 277, 400
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	35, 328, 538
BtsIMutI	CAGTG	1 cut(s)	556
BveI	ACCTGC	2 cut(s)	354, 547
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	85, 144
CviAII	CATG	3 cut(s)	147, 164, 568
CviJI	RGCY	6 cut(s)	20, 26, 65, 170, 244, 536
CviKI_1	RGCY	6 cut(s)	20, 26, 65, 170, 244, 536
CviQI	GTAC	2 cut(s)	85, 144
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	2 cut(s)	38, 102
DpnII	GATC	2 cut(s)	36, 100
DraI	TTTAAA	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	3 cut(s)	21, 163, 518
EcoRII	CCWGG	3 cut(s)	52, 277, 400
EcoT14I	CCWWGG	3 cut(s)	21, 163, 518
ErhI	CCWWGG	3 cut(s)	21, 163, 518
FaeI	CATG	3 cut(s)	150, 167, 571
FatI	CATG	3 cut(s)	146, 163, 567
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	3 cut(s)	42, 335, 525
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	150, 167, 571
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	229, 529, 576
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	2 cut(s)	444, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 355
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	150, 167, 571
Kzo9I	GATC	2 cut(s)	36, 100
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	17
MalI	GATC	2 cut(s)	38, 102
MboI	GATC	2 cut(s)	36, 100
MboII	GAAGA	2 cut(s)	266, 353
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	6 cut(s)	69, 219, 224, 384, 432, 524
MmeI	TCCRAC	2 cut(s)	184, 314
MnlI	CCTC	5 cut(s)	27, 179, 258, 261, 408
MseI	TTAA	4 cut(s)	90, 222, 378, 492
MspR9I	CCNGG	3 cut(s)	54, 279, 402
MvaI	CCWGG	3 cut(s)	54, 279, 402
MwoI	GCNNNNNNNGC	2 cut(s)	17, 355
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	36, 100
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	150, 167, 571
NlaIV	GGNNCC	2 cut(s)	169, 283
NspI	RCATGY	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	52, 277, 400
PspGI	CCWGG	3 cut(s)	52, 277, 400
PspN4I	GGNNCC	2 cut(s)	169, 283
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	86, 145
RsaNI	GTAC	2 cut(s)	85, 144
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	90, 222, 378, 492
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	36, 100
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	54, 279, 402
SetI	ASST	3 cut(s)	348, 538, 561
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	449
Sse9I	AATT	6 cut(s)	69, 219, 224, 384, 432, 524
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	52, 277, 400
StyI	CCWWGG	3 cut(s)	21, 163, 518
TaaI	ACNGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	140, 449
TasI	AATT	6 cut(s)	69, 219, 224, 384, 432, 524
TatI	WGTACW	2 cut(s)	84, 143
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	90, 222, 378, 492
Tru9I	TTAA	4 cut(s)	90, 222, 378, 492
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	556
XapI	RAATTY	3 cut(s)	224, 432, 524
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.