Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

18743145 .. 18743694

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27492.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTCTCTGAAAAGTACCTCAAAAACTGCAGCATTTTTGAGGATCAGTATATGCCCTCTTCTGATTGTTCTAGCACCTGGAGAGCCATCATTCATGGAGCTGAGCTTATCAGGTACAATTTAAAATGGCGTGTTGGCGACGGGCTGGAATATTCCTCTCTTAATGATTCTGTCCCTGCGGATGTTAATCAAATTATTAATGTGCCTACTCGCTTTGCAAATTCTGGGAGGGATACTTTGATATGGGGATCTACAGCTAATGGTTGCTTTTCAGTTAAATCTGCCTATAACTCCCTTTTTGATTTCTCAAATTCTCAAAATTCTCAATGGAAATTGATTTGGAATCTTGATATTCCTCCCAAGCTGAAAAATTTCCTTTGGACTATGCTTCATAAATCTATGCAGATCTATGCAGATTTGGAGAGCTTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos_2 RVT_1 zf-CCHC_4

Protein Analysis

145

Amino Acids

16.58

Weight (kDa)

6.07

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	90 - 142	1.8e-09	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	2 cut(s)	51, 256
AcsI	RAATTY	4 cut(s)	220, 310, 319, 370
AfaI	GTAC	2 cut(s)	17, 116
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	5 cut(s)	101, 106, 257, 364, 426
AluI	AGCT	5 cut(s)	101, 106, 257, 364, 426
AlwI	GGATC	2 cut(s)	51, 256
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	4 cut(s)	220, 310, 319, 370
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	28, 252
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	43, 248, 405
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	2 cut(s)	51, 256
BssMI	GATC	3 cut(s)	43, 248, 405
Bst2UI	CCWGG	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	46, 251, 408
BstMBI	GATC	3 cut(s)	43, 248, 405
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	2 cut(s)	28, 252
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	248, 405
BstYI	RGATCY	2 cut(s)	248, 405
BsuI	GTATCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	16, 115
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	7 cut(s)	86, 101, 106, 145, 257, 364, 426
CviKI_1	RGCY	7 cut(s)	86, 101, 106, 145, 257, 364, 426
CviQI	GTAC	2 cut(s)	16, 115
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	45, 250, 407
DpnII	GATC	3 cut(s)	43, 248, 405
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	98
FaiI	YATR	9 cut(s)	51, 53, 96, 244, 288, 386, 393, 401, 411
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	100
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	167, 343
Hpy188I	TCNGA	2 cut(s)	10, 64
Hpy188III	TCNNGA	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	30, 218, 403, 413
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	43, 248, 405
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	64, 91, 97, 131, 189, 210
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	72
MalI	GATC	3 cut(s)	45, 250, 407
MboI	GATC	3 cut(s)	43, 248, 405
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	2 cut(s)	248, 405
MluCI	AATT	7 cut(s)	118, 192, 220, 310, 319, 332, 370
MnlI	CCTC	6 cut(s)	29, 34, 67, 166, 222, 366
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	5 cut(s)	122, 162, 186, 198, 276
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	43, 248, 405
NlaIII	CATG	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	167, 343
PkrI	GCNGC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	248, 405
RsaI	GTAC	2 cut(s)	17, 116
RsaNI	GTAC	2 cut(s)	16, 115
SaqAI	TTAA	5 cut(s)	122, 162, 186, 198, 276
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	3 cut(s)	43, 248, 405
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	8 cut(s)	21, 80, 103, 108, 116, 259, 366, 428
SfcI	CTRYAG	2 cut(s)	28, 252
Sse9I	AATT	7 cut(s)	118, 192, 220, 310, 319, 332, 370
SsiI	CCGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	77
TasI	AATT	7 cut(s)	118, 192, 220, 310, 319, 332, 370
TfiI	GAWTC	2 cut(s)	167, 343
Tru1I	TTAA	5 cut(s)	122, 162, 186, 198, 276
Tru9I	TTAA	5 cut(s)	122, 162, 186, 198, 276
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	83, 380
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	4 cut(s)	220, 310, 319, 370
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.