Rmu_sc0000935.1_g000036

TPLATE-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000935.1
Physical Location & Seq
Reverse (-)
196260 .. 201496
5237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000935.1_g000036.1.cds

Sequence Viewer

Length: 1761 bp
atgcagtccaagcctgaagatgatgaagaagctctgatcggagctctagccactcaaatgttctcccataaactttgcatttgtgggtggaatcctccgagaagggttagaatggcagttcctgccccttgggagcaatccgccgccggccgctacatctccgctgccggccgctacatctccgtcatcgccaagtcctccgtagaagagatcgtcgcctccctcgcctccgccgtctgcaagaagcttgccttcgacctcatccactccacgctcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgtcagcgccgccgcagtctcgatcctcgccgccatcccctcctaccgcctccccaagctcatttccgacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggttcgcgatcaccgagacggcggctggatacggtcctctgctggtggggctggatcggccagaacatgctcgactactagatcaccgagacggcggctggtggggccggataaggtcaatctgtgtgactctgtgtgagaacaatgtcaatctgctggatacggtcctctgctggtggggctggatcggccagaacatgctcgactgctccgacgccgtttcgaaggtcgggttcgagtcggtggggcggttgtttcaggagttcgataccaaaaggatgagcagacttgccggagataagttgatagatagtgagaattcgcttgtgattctatccgattgggtctcttcaatggtggagagtttcagggccacggtgtttccgattgcgtatgcctttaaggctgtggcctccggctccgtcgaggtcataaggaagctatccaagtcttctggtggttctaatgcgactattgtggatagtaatgccgagaggttcgtcggagtttcgaatgtggtgatgcatttggtgctctttttggcctggtctttggatccagctttgatttttgaggtggggattgacatgttgtacttggctgatgttcctgtgcctcactttaccgtcgctgtggtgggggcaacaccggctttcacctttgctgccctacctcgtgaggagggcagcgcatgggtctctgcgcaaatcaatgatggagccaaacgcccgcattcatttgaaacatcccgcactatggatacagaacgggcagacatgcctcaagttcctgatttgatgagtttcaaggatacccttcttaattctaacactgttgaccattctgcaaaggatttggtgaatgggccgcggaaaattacagctgcagactgcaaaattgttgagttggatcgaggcccttctattgaattttctgatgaaatcattgaggaattggacagaccatggcatttctctcttattgctaagatgttggataaaacccttgccttcagttttgttcttgacaagttgactgccagatggaaacccttcttgaaaggaaattggcaactgattgacatacccaataacttctacataatcaagtttcaattggagatatatatgaagttggttcttgctggtggaccatggatcatcactggtcaataccttgctttacagcgatggaagctagatttcaactctgcaaatcacaaaatcagcaagattgctgtctgggtgagactaattggcctggacattcactatttcaaaattgaccctcttacttag

Protein Analysis

586

Amino Acids

65.08

Weight (kDa)

5.49

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AatII GACGTC 1 cut(s) 348
Acc16I TGCGCA 1 cut(s) 1167
AccI GTMKAC 1 cut(s) 285
AccII CGCG 2 cut(s) 470, 1333
AclWI GGATC 7 cut(s) 361, 525, 656, 1013, 1026, 1380, 1628
AcoI YGGCCR 4 cut(s) 148, 169, 521, 652
AcsI RAATTY 2 cut(s) 781, 1391
AcuI CTGAAG 2 cut(s) 36, 1459
AcyI GRCGYC 2 cut(s) 345, 678
AfaI GTAC 1 cut(s) 1058
AfiI CCNNNNNNNGG 1 cut(s) 1219
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 8 cut(s) 816, 1205, 1270, 1391, 1522, 1577, 1669, 1741
AhdI GACNNNNNGTC 1 cut(s) 448
AjnI CCWGG 2 cut(s) 1007, 1722
AluBI AGCT 8 cut(s) 32, 44, 247, 403, 904, 1025, 1346, 1660
AluI AGCT 8 cut(s) 32, 44, 247, 403, 904, 1025, 1346, 1660
Alw21I GWGCWC 2 cut(s) 46, 999
Alw26I GTCTC 6 cut(s) 367, 473, 546, 814, 1165, 1705
AlwI GGATC 7 cut(s) 361, 525, 656, 1013, 1026, 1380, 1628
AlwNI CAGNNNCTG 1 cut(s) 122
ApeKI GCWGC 4 cut(s) 164, 1127, 1149, 1346
ApoI RAATTY 2 cut(s) 781, 1391
Asp700I GAANNNNTTC 1 cut(s) 1514
AspLEI GCGC 3 cut(s) 353, 1154, 1168
AspS9I GGNCC 7 cut(s) 497, 568, 628, 834, 1328, 1379, 1613
AsuHPI GGTGA 8 cut(s) 271, 310, 466, 539, 994, 1111, 1333, 1720
AsuII TTCGAA 2 cut(s) 686, 974
AvaII GGWCC 3 cut(s) 497, 628, 1613
BamHI GGATCC 1 cut(s) 1018
BanII GRGCYC 1 cut(s) 46
BauI CACGAG 1 cut(s) 1137
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 2 cut(s) 46, 999
BbvI GCAGC 4 cut(s) 151, 1114, 1161, 1333
BccI CCATC 4 cut(s) 386, 1172, 1500, 1647
BceAI ACGGC 5 cut(s) 218, 433, 498, 571, 665
BciT130I CCWGG 2 cut(s) 1009, 1724
BciVI GTATCC 4 cut(s) 485, 616, 1216, 1267
BcoDI GTCTC 6 cut(s) 367, 473, 546, 814, 1165, 1705
BfaI CTAG 3 cut(s) 47, 542, 1661
BfmI CTRYAG 1 cut(s) 1347
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 4 cut(s) 485, 616, 1216, 1267
BglI GCCNNNNNGGC 1 cut(s) 866
Bme1390I CCNGG 2 cut(s) 1009, 1724
Bme18I GGWCC 3 cut(s) 497, 628, 1613
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgT120I GGNCC 7 cut(s) 497, 568, 628, 834, 1328, 1379, 1613
BmiI GGNNCC 4 cut(s) 569, 883, 1020, 1183
BmrFI CCNGG 2 cut(s) 1009, 1724
BmsI GCATC 2 cut(s) 321, 975
BpiI GAAGAC 1 cut(s) 906
Bpu14I TTCGAA 2 cut(s) 686, 974
BpuEI CTTGAG 1 cut(s) 1230
BsaHI GRCGYC 2 cut(s) 345, 678
BsaI GGTCTC 2 cut(s) 814, 1165
BsaJI CCNNGG 5 cut(s) 128, 837, 1331, 1427, 1616
Bsc4I CCNNNNNNNGG 1 cut(s) 1219
Bse118I RCCGGY 4 cut(s) 146, 167, 308, 1111
Bse1I ACTGG 1 cut(s) 1633
BseBI CCWGG 2 cut(s) 1009, 1724
BseDI CCNNGG 5 cut(s) 128, 837, 1331, 1427, 1616
BseGI GGATG 5 cut(s) 261, 312, 378, 747, 1208
BseLI CCNNNNNNNGG 1 cut(s) 1219
BseNI ACTGG 1 cut(s) 1633
BseRI GAGGAG 2 cut(s) 266, 1157
BseX3I CGGCCG 2 cut(s) 148, 169
BseXI GCAGC 4 cut(s) 151, 1114, 1161, 1333
BsgI GTGCAG 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 470, 1333
Bsh1285I CGRYCG 2 cut(s) 151, 172
BsiEI CGRYCG 2 cut(s) 151, 172
BsiHKAI GWGCWC 2 cut(s) 46, 999
BsiSI CCGG 7 cut(s) 147, 168, 309, 571, 756, 879, 1112
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 1219
BsmAI GTCTC 6 cut(s) 367, 473, 546, 814, 1165, 1705
BsmBI CGTCTC 2 cut(s) 473, 546
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 1195
Bso31I GGTCTC 2 cut(s) 814, 1165
Bsp119I TTCGAA 2 cut(s) 686, 974
Bsp1286I GDGCHC 2 cut(s) 46, 999
Bsp19I CCATGG 2 cut(s) 1427, 1616
Bsp68I TCGCGA 1 cut(s) 470
BspFNI CGCG 2 cut(s) 470, 1333
BspLI GGNNCC 4 cut(s) 569, 883, 1020, 1183
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 7 cut(s) 361, 525, 656, 1013, 1026, 1380, 1628
BspT104I TTCGAA 2 cut(s) 686, 974
BspTNI GGTCTC 2 cut(s) 814, 1165
BsrFI RCCGGY 4 cut(s) 146, 167, 308, 1111
BsrI ACTGG 1 cut(s) 1633
BssAI RCCGGY 4 cut(s) 146, 167, 308, 1111
BssECI CCNNGG 5 cut(s) 128, 837, 1331, 1427, 1616
BssNI GRCGYC 2 cut(s) 345, 678
BssSI CACGAG 1 cut(s) 1137
BssT1I CCWWGG 3 cut(s) 128, 1427, 1616
Bst2BI CACGAG 1 cut(s) 1137
Bst2UI CCWGG 2 cut(s) 1009, 1724
Bst4CI ACNGT 7 cut(s) 283, 301, 497, 628, 841, 1090, 1297
Bst6I CTCTTC 2 cut(s) 201, 817
BstACI GRCGYC 2 cut(s) 345, 678
BstAPI GCANNNNNTGC 2 cut(s) 122, 994
BstBI TTCGAA 2 cut(s) 686, 974
BstC8I GCNNGC 4 cut(s) 148, 169, 249, 1193
BstDEI CTNAG 2 cut(s) 1449, 1758
BstDSI CCRYGG 4 cut(s) 837, 1331, 1427, 1616
BstF5I GGATG 5 cut(s) 261, 312, 378, 747, 1208
BstFNI CGCG 2 cut(s) 470, 1333
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 3 cut(s) 353, 1154, 1168
BstMAI GTCTC 6 cut(s) 367, 473, 546, 814, 1165, 1705
BstMCI CGRYCG 2 cut(s) 151, 172
BstNI CCWGG 2 cut(s) 1009, 1724
BstNSI RCATGY 4 cut(s) 533, 664, 1054, 1243
BstSCI CCNGG 2 cut(s) 1007, 1722
BstSFI CTRYAG 1 cut(s) 1347
BstUI CGCG 2 cut(s) 470, 1333
BstV1I GCAGC 4 cut(s) 151, 1114, 1161, 1333
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1018
BstZI CGGCCG 2 cut(s) 148, 169
BsuI GTATCC 4 cut(s) 485, 616, 1216, 1267
BtgI CCRYGG 4 cut(s) 837, 1331, 1427, 1616
BtgZI GCGATG 2 cut(s) 172, 1666
BtsCI GGATG 5 cut(s) 261, 312, 378, 747, 1208
BtsIMutI CAGTG 2 cut(s) 1293, 1626
BtuMI TCGCGA 1 cut(s) 470
Cac8I GCNNGC 4 cut(s) 148, 169, 249, 1193
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 3 cut(s) 353, 1154, 1168
Cfr10I RCCGGY 4 cut(s) 146, 167, 308, 1111
Cfr13I GGNCC 7 cut(s) 497, 568, 628, 834, 1328, 1379, 1613
Cfr42I CCGCGG 1 cut(s) 1334
CseI GACGC 1 cut(s) 686
Csp6I GTAC 1 cut(s) 1057
CviAII CATG 7 cut(s) 530, 661, 1051, 1155, 1240, 1428, 1617
CviQI GTAC 1 cut(s) 1057
DdeI CTNAG 2 cut(s) 1449, 1758
DrdI GACNNNNNNGTC 1 cut(s) 344
DriI GACNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 4 cut(s) 148, 169, 521, 652
EagI CGGCCG 2 cut(s) 148, 169
Eam1104I CTCTTC 2 cut(s) 201, 817
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 2 cut(s) 201, 817
EciI GGCGGA 2 cut(s) 130, 220
Ecl136II GAGCTC 1 cut(s) 44
EclXI CGGCCG 2 cut(s) 148, 169
Eco130I CCWWGG 3 cut(s) 128, 1427, 1616
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 2 cut(s) 814, 1165
Eco47I GGWCC 3 cut(s) 497, 628, 1613
Eco52I CGGCCG 2 cut(s) 148, 169
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 36, 1459
EcoICRI GAGCTC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 1379
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 1007, 1722
EcoT14I CCWWGG 3 cut(s) 128, 1427, 1616
EcoT22I ATGCAT 1 cut(s) 990
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 128, 1427, 1616
Esp3I CGTCTC 2 cut(s) 473, 546
FaeI CATG 7 cut(s) 533, 664, 1054, 1158, 1243, 1431, 1620
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 308
FatI CATG 7 cut(s) 529, 660, 1050, 1154, 1239, 1427, 1616
FauI CCCGC 2 cut(s) 1200, 1220
FblI GTMKAC 1 cut(s) 285
FokI GGATG 5 cut(s) 248, 299, 365, 754, 1195
FriOI GRGCYC 1 cut(s) 46
FspBI CTAG 3 cut(s) 47, 542, 1661
FspI TGCGCA 1 cut(s) 1167
GlaI GCGC 3 cut(s) 352, 1153, 1167
HaeII RGCGCY 1 cut(s) 354
HapII CCGG 7 cut(s) 147, 168, 309, 571, 756, 879, 1112
HgaI GACGC 1 cut(s) 686
HhaI GCGC 3 cut(s) 353, 1154, 1168
Hin1I GRCGYC 2 cut(s) 345, 678
Hin1II CATG 7 cut(s) 533, 664, 1054, 1158, 1243, 1431, 1620
Hin6I GCGC 3 cut(s) 351, 1152, 1166
HinP1I GCGC 3 cut(s) 351, 1152, 1166
HincII GTYRAC 3 cut(s) 286, 1300, 1497
HindII GTYRAC 3 cut(s) 286, 1300, 1497
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 5 cut(s) 91, 443, 592, 701, 793
HpaII CCGG 7 cut(s) 147, 168, 309, 571, 756, 879, 1112
HphI GGTGA 8 cut(s) 271, 310, 466, 539, 994, 1111, 1333, 1720
Hpy166II GTNNAC 4 cut(s) 286, 1300, 1497, 1613
Hpy188III TCNNGA 8 cut(s) 326, 364, 469, 722, 1139, 1253, 1487, 1519
Hpy8I GTNNAC 4 cut(s) 286, 1300, 1497, 1613
Hpy99I CGWCG 6 cut(s) 218, 287, 680, 890, 968, 1094
HpyAV CCTTC 9 cut(s) 96, 262, 415, 470, 682, 1289, 1392, 1483, 1525
HpyCH4III ACNGT 7 cut(s) 283, 301, 497, 628, 841, 1090, 1297
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 9 cut(s) 4, 78, 240, 306, 988, 1310, 1349, 1356, 1676
HpyF3I CTNAG 2 cut(s) 1449, 1758
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 2 cut(s) 345, 678
Hsp92II CATG 7 cut(s) 533, 664, 1054, 1158, 1243, 1431, 1620
HspAI GCGC 3 cut(s) 351, 1152, 1166
KroI GCCGGC 2 cut(s) 146, 167
KroNI GCCGGC 2 cut(s) 148, 169
KspI CCGCGG 1 cut(s) 1334
LmnI GCTCC 6 cut(s) 41, 133, 279, 677, 887, 1181
Lsp1109I GCAGC 4 cut(s) 151, 1114, 1161, 1333
LweI GCATC 2 cut(s) 321, 975
MaeI CTAG 3 cut(s) 47, 542, 1661
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 589
MboII GAAGA 5 cut(s) 29, 38, 218, 804, 906
MfeI CAATTG 1 cut(s) 1577
MflI RGATCY 1 cut(s) 1018
MhlI GDGCHC 2 cut(s) 46, 999
MlyI GAGTC 3 cut(s) 437, 586, 710
MmeI TCCRAC 5 cut(s) 435, 699, 946, 1350, 1437
Mph1103I ATGCAT 1 cut(s) 990
MroNI GCCGGC 2 cut(s) 146, 167
MroXI GAANNNNTTC 1 cut(s) 1514
MseI TTAA 2 cut(s) 864, 1284
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 3 cut(s) 164, 1333, 1346
MspI CCGG 7 cut(s) 147, 168, 309, 571, 756, 879, 1112
MspR9I CCNGG 2 cut(s) 1009, 1724
MunI CAATTG 1 cut(s) 1577
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 2 cut(s) 1009, 1724
MvnI CGCG 2 cut(s) 470, 1333
NaeI GCCGGC 2 cut(s) 148, 169
NcoI CCATGG 2 cut(s) 1427, 1616
NgoMIV GCCGGC 2 cut(s) 146, 167
NlaIII CATG 7 cut(s) 533, 664, 1054, 1158, 1243, 1431, 1620
NlaIV GGNNCC 4 cut(s) 569, 883, 1020, 1183
NmeAIII GCCGAG 1 cut(s) 979
NmuCI GTSAC 1 cut(s) 589
NruI TCGCGA 1 cut(s) 470
NsbI TGCGCA 1 cut(s) 1167
NsiI ATGCAT 1 cut(s) 990
NspI RCATGY 4 cut(s) 533, 664, 1054, 1243
NspV TTCGAA 2 cut(s) 686, 974
PciI ACATGT 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 333, 474, 672, 845
PctI GAATGC 1 cut(s) 1195
PdiI GCCGGC 2 cut(s) 148, 169
PdmI GAANNNNTTC 1 cut(s) 1514
PfeI GAWTC 2 cut(s) 91, 793
PflFI GACNNNGTC 1 cut(s) 299
PleI GAGTC 3 cut(s) 437, 586, 709
PpsI GAGTC 3 cut(s) 437, 586, 709
PscI ACATGT 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 1007, 1722
PspGI CCWGG 2 cut(s) 1007, 1722
PspN4I GGNNCC 4 cut(s) 569, 883, 1020, 1183
PspPI GGNCC 7 cut(s) 497, 568, 628, 834, 1328, 1379, 1613
PstI CTGCAG 1 cut(s) 1351
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 1018
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 1346
RruI TCGCGA 1 cut(s) 470
RsaI GTAC 1 cut(s) 1058
RsaNI GTAC 1 cut(s) 1057
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 46
SacII CCGCGG 1 cut(s) 1334
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 864, 1284
Sau96I GGNCC 7 cut(s) 497, 568, 628, 834, 1328, 1379, 1613
SchI GAGTC 3 cut(s) 437, 586, 710
ScrFI CCNGG 2 cut(s) 1009, 1724
SduI GDGCHC 2 cut(s) 46, 999
SfaNI GCATC 2 cut(s) 321, 975
SfcI CTRYAG 1 cut(s) 1347
Sfr303I CCGCGG 1 cut(s) 1334
SfuI TTCGAA 2 cut(s) 686, 974
SgrBI CCGCGG 1 cut(s) 1334
SinI GGWCC 3 cut(s) 497, 628, 1613
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 1245
SmoI CTYRAG 1 cut(s) 1245
SspMI CTAG 3 cut(s) 47, 542, 1661
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 1007, 1722
StyI CCWWGG 3 cut(s) 128, 1427, 1616
TaaI ACNGT 7 cut(s) 283, 301, 497, 628, 841, 1090, 1297
TaiI ACGT 1 cut(s) 348
TatI WGTACW 1 cut(s) 1056
TauI GCSGC 9 cut(s) 146, 153, 174, 356, 359, 377, 488, 561, 1333
TfiI GAWTC 2 cut(s) 91, 793
Tru1I TTAA 2 cut(s) 864, 1284
Tru9I TTAA 2 cut(s) 864, 1284
TscAI CASTG 2 cut(s) 1300, 1633
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 4 cut(s) 164, 1127, 1149, 1346
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 4 cut(s) 39, 1188, 1416, 1607
TspGWI ACGGA 3 cut(s) 172, 190, 874
TspRI CASTG 2 cut(s) 1300, 1633
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 3 cut(s) 497, 628, 1613
XapI RAATTY 2 cut(s) 781, 1391
XceI RCATGY 4 cut(s) 533, 664, 1054, 1243
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 1514
XspI CTAG 3 cut(s) 47, 542, 1661
ZraI GACGTC 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.