Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

6547737 .. 6548994

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGGCTTTATCTCCTCCTCTGTTTTCAACAATTGGATGGCCCTTGGAGGATCATCCCATAAGTCATGACCACAACAACTATTTCTCAGCAGAATCATCGCTTCCTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTACGCCATCCACTGCAATCAGCGGCGAGTCCAACATTTCTTCAGTGGATAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAACTTGTACTCATCACTACGTTCACTGGTTCCCGCAGATCACGCGCAAAGATTAAGCATTCCAGCCACAGTTTTGCGAGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGAGACGAGCTTTTATCGAAAATTTCTACGCAAGAAAATGTAATTTTACAAGAGGAAAAGAAAGTAAAAAGCACAGCTCGGAGGAATAGGAGCTCATTATCAGCTGTTTCAACAACTCGTCTTAGTGATAGTGAAGTTGCAATTCAAATATCCACAATTAAGTCCTCCCACAATTTCGTATCTCGGATTTTGCATAGTCTGGAGGAGGATGGGCTTGAAATACTAAATGCTTCTTCCTTTGAGTCCTCTGGAGGGAGGGTCTTCTATAATTTACATTTCCAGGTAGATATGTTCTATAGGTTGGAATGCGAGAATTTAAGCGAGAGGCTCATGTCCTTCTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

6.36

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	69 - 120	2.9e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	4 cut(s)	177, 238, 241, 288
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	408, 700
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	30, 383, 498, 533, 605
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	7 cut(s)	145, 211, 355, 397, 464, 480, 491
AluI	AGCT	7 cut(s)	145, 211, 355, 397, 464, 480, 491
Alw21I	GWGCWC	2 cut(s)	357, 482
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	127, 361
ApoI	RAATTY	2 cut(s)	408, 700
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	357, 482
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	2 cut(s)	357, 482
BbvI	GCAGC	2 cut(s)	139, 373
BccI	CCATC	3 cut(s)	33, 169, 590
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	2 cut(s)	139, 148
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	125, 682
BisI	GCNGC	4 cut(s)	128, 178, 241, 362
BlsI	GCNGC	4 cut(s)	129, 179, 242, 363
Bme1390I	CCNGG	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	3 cut(s)	341, 608, 657
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	4 cut(s)	44, 55, 161, 601
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	3 cut(s)	6, 9, 605
BseXI	GCAGC	2 cut(s)	139, 373
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	357, 482
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	1 cut(s)	384
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	2 cut(s)	312, 698
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	357, 482
Bsp143I	GATC	5 cut(s)	52, 139, 148, 249, 292
BspACI	CCGC	4 cut(s)	177, 238, 241, 288
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	52, 139, 148, 249, 292
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	2 cut(s)	135, 325
BstDEI	CTNAG	2 cut(s)	88, 509
BstF5I	GGATG	4 cut(s)	44, 55, 161, 601
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	5 cut(s)	55, 142, 151, 252, 295
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	5 cut(s)	52, 139, 148, 249, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 361
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	125, 682
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	139, 373
BstV2I	GAAGAC	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	44, 55, 161, 601
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 204, 278
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	68, 718, 732
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	88, 509
DpnI	GATC	5 cut(s)	54, 141, 150, 251, 294
DpnII	GATC	5 cut(s)	52, 139, 148, 249, 292
Ecl136II	GAGCTC	2 cut(s)	355, 480
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	357, 482
Eco53kI	GAGCTC	2 cut(s)	355, 480
Eco57I	CTGAAG	1 cut(s)	180
EcoICRI	GAGCTC	2 cut(s)	355, 480
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	357, 482
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	3 cut(s)	71, 721, 735
FaiI	YATR	9 cut(s)	62, 69, 582, 654, 677, 684, 719, 729, 733
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	67, 717, 731
FauI	CCCGC	1 cut(s)	295
FbaI	TGATCA	2 cut(s)	139, 148
Fnu4HI	GCNGC	4 cut(s)	128, 178, 241, 362
FokI	GGATG	4 cut(s)	42, 51, 148, 608
FriOI	GRGCYC	2 cut(s)	357, 482
Fsp4HI	GCNGC	4 cut(s)	128, 178, 241, 362
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	128, 178, 241, 362
GsuI	CTGGAG	3 cut(s)	341, 608, 657
HaeIII	GGCC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	71, 721, 735
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	95, 182, 629
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	468, 573
Hpy188III	TCNNGA	4 cut(s)	68, 350, 587, 636
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	2 cut(s)	135, 325
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	127, 170, 527, 580, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 361
HpyF3I	CTNAG	2 cut(s)	88, 509
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	71, 721, 735
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	2 cut(s)	139, 148
Kzo9I	GATC	5 cut(s)	52, 139, 148, 249, 292
LmnI	GCTCC	2 cut(s)	360, 477
LpnPI	CCDG	8 cut(s)	266, 330, 363, 371, 572, 621, 653, 680
Lsp1109I	GCAGC	2 cut(s)	139, 373
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	5 cut(s)	54, 141, 150, 251, 294
MboI	GATC	5 cut(s)	52, 139, 148, 249, 292
MboII	GAAGA	4 cut(s)	186, 259, 612, 640
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	357, 482
MluCI	AATT	9 cut(s)	33, 378, 408, 429, 528, 543, 559, 655, 700
MlyI	GAGTC	2 cut(s)	191, 638
MmeI	TCCRAC	2 cut(s)	210, 669
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	4 cut(s)	213, 308, 546, 704
MspA1I	CMGCKG	2 cut(s)	177, 491
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	2 cut(s)	312, 698
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	296, 361
NdeII	GATC	5 cut(s)	52, 139, 148, 249, 292
NlaIII	CATG	3 cut(s)	71, 721, 735
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	733
PagI	TCATGA	1 cut(s)	67
PctI	GAATGC	2 cut(s)	312, 698
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	129, 179, 242, 363
PleI	GAGTC	2 cut(s)	190, 637
PpsI	GAGTC	2 cut(s)	190, 637
Psp124BI	GAGCTC	2 cut(s)	357, 482
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	2 cut(s)	357, 482
SaqAI	TTAA	4 cut(s)	213, 308, 546, 704
SatI	GCNGC	4 cut(s)	128, 178, 241, 362
Sau3AI	GATC	5 cut(s)	52, 139, 148, 249, 292
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	2 cut(s)	191, 638
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	2 cut(s)	357, 482
SfcI	CTRYAG	2 cut(s)	125, 682
Sse9I	AATT	9 cut(s)	33, 378, 408, 429, 528, 543, 559, 655, 700
SsiI	CCGC	4 cut(s)	177, 238, 241, 288
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	2 cut(s)	357, 482
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	135, 325
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	404
TasI	AATT	9 cut(s)	33, 378, 408, 429, 528, 543, 559, 655, 700
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	180, 243
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	4 cut(s)	213, 308, 546, 704
Tru9I	TTAA	4 cut(s)	213, 308, 546, 704
TscAI	CASTG	3 cut(s)	172, 204, 285
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	127, 361
Tsp45I	GTSAC	1 cut(s)	233
TspRI	CASTG	3 cut(s)	172, 204, 285
XapI	RAATTY	2 cut(s)	408, 700
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.