Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

7459324 .. 7459641

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGACGTCGGCTTGGTTGCGAAGGCACGAGTCTTCTCACCTTCAACTTTGGTGTTTGTGTTGGGCGATGTGGGATGGGGACTCGATGATGGCAGTGGTTCAGATCCGATCGGGGTTACCTTGGATTTTGTCTCTGTTTTGGTGGCCGTGAGTGATATCGGTGGATGGGGTCTCACGCCTCCGGATGGGAGGCTAGGCGGTAGGATTCCGGGATTGATTGAGCTTTCTGATCCTGCAAGATTCCAGGCTGGTGCGGCGGCAAGGCAAAGCTCTCTGCTCATGTCGAAGGATGCAGTGGATGGGCCTCTTGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

105

Amino Acids

10.6

Weight (kDa)

4.25

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	198, 254, 257
AclWI	GGATC	2 cut(s)	98, 224
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	223, 270
AluI	AGCT	2 cut(s)	223, 270
Alw26I	GTCTC	2 cut(s)	136, 176
AlwI	GGATC	2 cut(s)	98, 224
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	3 cut(s)	144, 302, 311
AspS9I	GGNCC	2 cut(s)	302, 311
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	30
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	25
BccI	CCATC	5 cut(s)	69, 83, 159, 179, 293
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	136, 176
BfaI	CTAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	310
BisI	GCNGC	2 cut(s)	255, 258
BlsI	GCNGC	2 cut(s)	256, 259
Bme1390I	CCNGG	2 cut(s)	210, 245
BmgT120I	GGNCC	2 cut(s)	302, 311
BmrFI	CCNGG	2 cut(s)	210, 245
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	5 cut(s)	80, 170, 190, 295, 304
BseLI	CCNNNNNNNGG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	146, 304, 313
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	182, 209
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	136, 176
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	146, 304, 313
Bso31I	GGTCTC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	103, 108, 229
BspACI	CCGC	3 cut(s)	198, 254, 257
BspANI	GGCC	3 cut(s)	146, 304, 313
BspEI	TCCGGA	1 cut(s)	181
BspPI	GGATC	2 cut(s)	98, 224
BspTNI	GGTCTC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	103, 108, 229
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	5 cut(s)	80, 170, 190, 295, 304
BstKTI	GATC	3 cut(s)	106, 111, 232
BstMAI	GTCTC	2 cut(s)	136, 176
BstMBI	GATC	3 cut(s)	103, 108, 229
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 310
BstNI	CCWGG	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	208, 243
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	146, 304, 313
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	80, 170, 190, 295, 304
BtsI	GCAGTG	2 cut(s)	100, 300
BtsIMutI	CAGTG	2 cut(s)	100, 300
Cfr13I	GGNCC	2 cut(s)	302, 311
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	8 cut(s)	12, 146, 193, 223, 248, 270, 304, 313
CviKI_1	RGCY	8 cut(s)	12, 146, 193, 223, 248, 270, 304, 313
DpnI	GATC	3 cut(s)	105, 110, 231
DpnII	GATC	3 cut(s)	103, 108, 229
EaeI	YGGCCR	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	283
FaiI	YATR	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	255, 258
FokI	GGATG	5 cut(s)	87, 177, 197, 302, 311
Fsp4HI	GCNGC	2 cut(s)	255, 258
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	2 cut(s)	255, 258
HaeIII	GGCC	3 cut(s)	146, 304, 313
HapII	CCGG	2 cut(s)	182, 209
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	4 cut(s)	30, 81, 205, 240
HpaII	CCGG	2 cut(s)	182, 209
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	103, 108, 229
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	16, 51, 280
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	236, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 310
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	103, 108, 229
LpnPI	CCDG	6 cut(s)	195, 222, 230, 234, 246, 257
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	105, 110, 231
MboI	GATC	3 cut(s)	103, 108, 229
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	39, 75
MnlI	CCTC	3 cut(s)	183, 189, 315
MroI	TCCGGA	1 cut(s)	181
MspI	CCGG	2 cut(s)	182, 209
MspR9I	CCNGG	2 cut(s)	210, 245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	254, 310
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	103, 108, 229
NlaIII	CATG	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	205, 240
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	256, 259
Ple19I	CGATCG	1 cut(s)	111
PleI	GAGTC	2 cut(s)	38, 75
PpsI	GAGTC	2 cut(s)	38, 75
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	302, 311
PsuI	RGATCY	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	111
SatI	GCNGC	2 cut(s)	255, 258
Sau3AI	GATC	3 cut(s)	103, 108, 229
Sau96I	GGNCC	2 cut(s)	302, 311
SchI	GAGTC	2 cut(s)	39, 75
ScrFI	CCNGG	2 cut(s)	210, 245
SetI	ASST	5 cut(s)	9, 43, 122, 225, 272
SfaNI	GCATC	1 cut(s)	280
SfiI	GGCCNNNNNGGCC	1 cut(s)	310
SsiI	CCGC	3 cut(s)	198, 254, 257
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	208, 243
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	84, 284
TauI	GCSGC	2 cut(s)	257, 260
TfiI	GAWTC	2 cut(s)	205, 240
TscAI	CASTG	2 cut(s)	100, 300
TspRI	CASTG	2 cut(s)	100, 300
XspI	CTAG	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.