Rmu_sc0002522.1_g000061

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002522.1
OG0001772
Physical Location & Seq
Forward (+)
220476 .. 222295
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002522.1_g000061.1.cds

Sequence Viewer

Length: 1377 bp
atgttagccaaagctggctggaggcttttccaaaattattctggattgtgggctactgtttataagaataagtacttgtctcatgacaatcttttttatgctaattatcaaattcttaaagactgttctagtacttggcgaagtgttgtttatggtgcgagtcttttaaaacaagggcttacttggagagttggagatggtaagagaattaaattttggattgatatttggctgcttcctcttgctcttattaattatattcatcaggatgttgaaattgatataaatgctacaatttgctctttttggaatgagaatggctggaacatcaacttgttatattcttatttccctgaggatattgttagtcgaattctgcatactcctcctggctttgatggatgcggagaagatatccagatatggaactacacttctaatggagacttttctgtcaaatctgcgcacaacattttctttgatacttatgatcagcatcattctccttggaaattcatatggaaaatgcacatacctcccaaacttaaaacctttacttgggtgctttgccatggtaagttacttactaatgttcaaagggtcagaaggcacttttcttctaatgactcttgttctctttgtcattctgctagtgaatctcttgttcatctctttagagactgcccttgtgttcaaaatatttggaattctttcactttacctaactctattattcatacctctaacttggattggaatgcttggctaatggctcacctgcattgtactattgaaactagcgttgatattcaatggtgttctttctttgttttcatctgctggttcatttggaaatggagaaacaagtgtgtttttgatgtttcttttcaaaggcctagaaaccctggtatgcttgttatctctgctattaccgaatggatcactgctcaagctaaagttaatgtggatagaaattatcgcttgaatttgctgagttggttgaagcctcctgctgggatttttaaattgaatgtggatggaactagacatggtccatcaggaaaaattggtgctggtggtgtcattagatgctctaatggcaattggatcaaagggtttcaggtatatagatttcttttctggcatctcaagccccaccgaactcccgagtcccgaacctgcttctctcccgagtctcggcgtctccggtctttcaagctccacccagcccccaccggcgagctccaactccagcctttcaagccctacccagcccccaccgtcgagctccacctccagcctttcaagccctacccagcccccaccgccgaactccacgcctccacctccagcagcaacctgcaactagcaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

458

Amino Acids

53.2

Weight (kDa)

9.2

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AarI CACCTGC 1 cut(s) 786
AasI GACNNNNNNGTC 1 cut(s) 452
Acc16I TGCGCA 1 cut(s) 465
Acc36I ACCTGC 3 cut(s) 786, 1187, 1368
AciI CCGC 2 cut(s) 405, 1326
AclWI GGATC 2 cut(s) 947, 1115
AcsI RAATTY 6 cut(s) 111, 212, 372, 512, 706, 985
AcyI GRCGYC 1 cut(s) 1201
AfaI GTAC 3 cut(s) 74, 133, 787
AfiI CCNNNNNNNGG 3 cut(s) 558, 1013, 1197
AjnI CCWGG 2 cut(s) 388, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 5 cut(s) 14, 953, 1219, 1243, 1288
AluI AGCT 5 cut(s) 14, 953, 1219, 1243, 1288
Alw21I GWGCWC 2 cut(s) 1245, 1290
Alw26I GTCTC 5 cut(s) 84, 438, 672, 1200, 1208
AlwI GGATC 2 cut(s) 947, 1115
Ama87I CYCGRG 2 cut(s) 1166, 1190
AoxI GGCC 1 cut(s) 893
ApeKI GCWGC 2 cut(s) 232, 1353
ApoI RAATTY 6 cut(s) 111, 212, 372, 512, 706, 985
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 1052
AsuHPI GGTGA 1 cut(s) 767
AvaI CYCGRG 2 cut(s) 1166, 1190
AvaII GGWCC 1 cut(s) 1052
AxyI CCTNAGG 1 cut(s) 354
BanII GRGCYC 2 cut(s) 1245, 1290
Bbv12I GWGCWC 2 cut(s) 1245, 1290
BbvI GCAGC 2 cut(s) 219, 1365
BccI CCATC 4 cut(s) 191, 392, 1031, 1063
BciT130I CCWGG 2 cut(s) 390, 906
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 5 cut(s) 84, 438, 672, 1200, 1208
BfaI CTAG 6 cut(s) 129, 651, 798, 897, 1044, 1367
BfuAI ACCTGC 3 cut(s) 786, 1187, 1368
BisI GCNGC 2 cut(s) 233, 1354
BlsI GCNGC 2 cut(s) 234, 1355
BmcAI AGTACT 2 cut(s) 74, 133
Bme1390I CCNGG 2 cut(s) 390, 906
Bme18I GGWCC 1 cut(s) 1052
BmeT110I CYCGRG 2 cut(s) 1166, 1190
BmgT120I GGNCC 1 cut(s) 1052
BmrFI CCNGG 2 cut(s) 390, 906
BmsI GCATC 4 cut(s) 392, 505, 1079, 1153
BpmI CTGGAG 4 cut(s) 40, 1235, 1280, 1333
BpuEI CTTGAG 2 cut(s) 933, 1133
BsaBI GATNNNNATC 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 1201
BsaJI CCNNGG 3 cut(s) 506, 571, 904
BsaWI WCCGGW 1 cut(s) 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 558, 1013, 1197
Bse118I RCCGGY 1 cut(s) 1235
Bse21I CCTNAGG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 390, 906
BseDI CCNNGG 3 cut(s) 506, 571, 904
BseGI GGATG 3 cut(s) 274, 407, 1042
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 558, 1013, 1197
BseMII CTCAG 2 cut(s) 345, 983
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 219, 1365
BseYI CCCAGC 4 cut(s) 1013, 1225, 1270, 1315
BshFI GGCC 1 cut(s) 895
BsiHKAI GWGCWC 2 cut(s) 1245, 1290
BsiHKCI CYCGRG 2 cut(s) 1166, 1190
BsiSI CCGG 2 cut(s) 1207, 1236
BslFI GGGAC 1 cut(s) 1156
BslI CCNNNNNNNGG 3 cut(s) 558, 1013, 1197
BsmAI GTCTC 5 cut(s) 84, 438, 672, 1200, 1208
BsmBI CGTCTC 1 cut(s) 1208
BsmFI GGGAC 1 cut(s) 1156
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 1 cut(s) 895
BsoBI CYCGRG 2 cut(s) 1166, 1190
Bsp1286I GDGCHC 2 cut(s) 1245, 1290
Bsp143I GATC 3 cut(s) 490, 939, 1107
Bsp19I CCATGG 1 cut(s) 571
BspACI CCGC 2 cut(s) 405, 1326
BspANI GGCC 1 cut(s) 895
BspCNI CTCAG 2 cut(s) 346, 984
BspHI TCATGA 1 cut(s) 82
BspMI ACCTGC 3 cut(s) 786, 1187, 1368
BspPI GGATC 2 cut(s) 947, 1115
BsrFI RCCGGY 1 cut(s) 1235
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 3 cut(s) 506, 571, 904
BssMI GATC 3 cut(s) 490, 939, 1107
BssNI GRCGYC 1 cut(s) 1201
BssT1I CCWWGG 2 cut(s) 506, 571
Bst2UI CCWGG 2 cut(s) 390, 906
Bst4CI ACNGT 3 cut(s) 58, 125, 1282
BstACI GRCGYC 1 cut(s) 1201
BstC8I GCNNGC 2 cut(s) 16, 1241
BstDEI CTNAG 2 cut(s) 354, 992
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 3 cut(s) 274, 407, 1042
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 493, 942, 1110
BstMAI GTCTC 5 cut(s) 84, 438, 672, 1200, 1208
BstMBI GATC 3 cut(s) 490, 939, 1107
BstMWI GCNNNNNNNGC 5 cut(s) 1098, 1150, 1261, 1306, 1325
BstNI CCWGG 2 cut(s) 390, 906
BstSCI CCNGG 2 cut(s) 388, 904
BstV1I GCAGC 2 cut(s) 219, 1365
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 895
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 3 cut(s) 274, 407, 1042
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 1 cut(s) 942
BveI ACCTGC 3 cut(s) 786, 1187, 1368
Cac8I GCNNGC 2 cut(s) 16, 1241
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 1 cut(s) 1052
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 3 cut(s) 73, 132, 786
CviAII CATG 3 cut(s) 83, 572, 1049
CviQI GTAC 3 cut(s) 73, 132, 786
DdeI CTNAG 2 cut(s) 354, 992
DpnI GATC 3 cut(s) 492, 941, 1109
DpnII GATC 3 cut(s) 490, 939, 1107
DraI TTTAAA 2 cut(s) 168, 1024
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
Ecl136II GAGCTC 2 cut(s) 1243, 1288
Eco130I CCWWGG 2 cut(s) 506, 571
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 2 cut(s) 1245, 1290
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 1052
Eco53kI GAGCTC 2 cut(s) 1243, 1288
Eco81I CCTNAGG 1 cut(s) 354
Eco88I CYCGRG 2 cut(s) 1166, 1190
EcoICRI GAGCTC 2 cut(s) 1243, 1288
EcoRI GAATTC 2 cut(s) 372, 706
EcoRII CCWGG 2 cut(s) 388, 904
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 506, 571
EcoT38I GRGCYC 2 cut(s) 1245, 1290
ErhI CCWWGG 2 cut(s) 506, 571
Esp3I CGTCTC 1 cut(s) 1208
FaeI CATG 3 cut(s) 86, 575, 1052
FaqI GGGAC 1 cut(s) 1156
FatI CATG 3 cut(s) 82, 571, 1048
FauNDI CATATG 1 cut(s) 518
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 233, 1354
FokI GGATG 3 cut(s) 281, 414, 1049
FriOI GRGCYC 2 cut(s) 1245, 1290
Fsp4HI GCNGC 2 cut(s) 233, 1354
FspBI CTAG 6 cut(s) 129, 651, 798, 897, 1044, 1367
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 233, 1354
GsaI CCCAGC 4 cut(s) 1017, 1229, 1274, 1319
GsuI CTGGAG 4 cut(s) 40, 1235, 1280, 1333
HaeIII GGCC 1 cut(s) 895
HapII CCGG 2 cut(s) 1207, 1236
HgaI GACGC 1 cut(s) 1190
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 1201
Hin1II CATG 3 cut(s) 86, 575, 1052
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 5 cut(s) 160, 626, 656, 1169, 1193
HpaII CCGG 2 cut(s) 1207, 1236
HphI GGTGA 1 cut(s) 767
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 8 cut(s) 42, 83, 266, 418, 1059, 1166, 1173, 1190
Hpy99I CGWCG 1 cut(s) 1286
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 3 cut(s) 58, 125, 1282
HpyCH4V TGCA 4 cut(s) 379, 529, 781, 1363
HpyF10VI GCNNNNNNNGC 5 cut(s) 1098, 1150, 1261, 1306, 1325
HpyF3I CTNAG 2 cut(s) 354, 992
Hsp92I GRCGYC 1 cut(s) 1201
Hsp92II CATG 3 cut(s) 86, 575, 1052
HspAI GCGC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 490, 939, 1107
LmnI GCTCC 3 cut(s) 1224, 1248, 1293
Lsp1109I GCAGC 2 cut(s) 219, 1365
LweI GCATC 4 cut(s) 392, 505, 1079, 1153
MaeI CTAG 6 cut(s) 129, 651, 798, 897, 1044, 1367
MaeIII GTNAC 1 cut(s) 579
MalI GATC 3 cut(s) 492, 941, 1109
MboI GATC 3 cut(s) 490, 939, 1107
MboII GAAGA 2 cut(s) 422, 609
MfeI CAATTG 1 cut(s) 1102
MhlI GDGCHC 2 cut(s) 1245, 1290
MlyI GAGTC 4 cut(s) 169, 620, 1178, 1202
MmeI TCCRAC 2 cut(s) 172, 1270
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 7 cut(s) 117, 167, 210, 252, 546, 960, 1023
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 1207, 1236
MspR9I CCNGG 2 cut(s) 390, 906
MunI CAATTG 1 cut(s) 1102
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 2 cut(s) 390, 906
MwoI GCNNNNNNNGC 5 cut(s) 1098, 1150, 1261, 1306, 1325
NcoI CCATGG 1 cut(s) 571
NdeI CATATG 1 cut(s) 518
NdeII GATC 3 cut(s) 490, 939, 1107
NlaIII CATG 3 cut(s) 86, 575, 1052
NmeAIII GCCGAG 1 cut(s) 1177
NsbI TGCGCA 1 cut(s) 465
PagI TCATGA 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 786
PceI AGGCCT 1 cut(s) 895
PctI GAATGC 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 1 cut(s) 656
PflFI GACNNNGTC 1 cut(s) 1050
PkrI GCNGC 2 cut(s) 234, 1355
PleI GAGTC 4 cut(s) 168, 620, 1177, 1201
PpsI GAGTC 4 cut(s) 168, 620, 1177, 1201
PshBI ATTAAT 1 cut(s) 252
PsiI TTATAA 1 cut(s) 63
Psp124BI GAGCTC 2 cut(s) 1245, 1290
Psp6I CCWGG 2 cut(s) 388, 904
PspFI CCCAGC 4 cut(s) 1013, 1225, 1270, 1315
PspGI CCWGG 2 cut(s) 388, 904
PspPI GGNCC 1 cut(s) 1052
PsyI GACNNNGTC 1 cut(s) 1050
RsaI GTAC 3 cut(s) 74, 133, 787
RsaNI GTAC 3 cut(s) 73, 132, 786
RseI CAYNNNNRTG 1 cut(s) 267
SacI GAGCTC 2 cut(s) 1245, 1290
SaqAI TTAA 7 cut(s) 117, 167, 210, 252, 546, 960, 1023
SatI GCNGC 2 cut(s) 233, 1354
Sau3AI GATC 3 cut(s) 490, 939, 1107
Sau96I GGNCC 1 cut(s) 1052
ScaI AGTACT 2 cut(s) 74, 133
SchI GAGTC 4 cut(s) 169, 620, 1178, 1202
ScrFI CCNGG 2 cut(s) 390, 906
SduI GDGCHC 2 cut(s) 1245, 1290
SfaNI GCATC 4 cut(s) 392, 505, 1079, 1153
SgrAI CRCCGGYG 1 cut(s) 1235
SinI GGWCC 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 948, 1148
SmoI CTYRAG 2 cut(s) 948, 1148
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 2 cut(s) 405, 1326
SspI AATATT 1 cut(s) 700
SspMI CTAG 6 cut(s) 129, 651, 798, 897, 1044, 1367
SstI GAGCTC 2 cut(s) 1245, 1290
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 2 cut(s) 388, 904
StyI CCWWGG 2 cut(s) 506, 571
TaaI ACNGT 3 cut(s) 58, 125, 1282
TaqI TCGA 2 cut(s) 370, 1284
TatI WGTACW 3 cut(s) 72, 131, 785
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 7 cut(s) 117, 167, 210, 252, 546, 960, 1023
Tru9I TTAA 7 cut(s) 117, 167, 210, 252, 546, 960, 1023
TscAI CASTG 1 cut(s) 949
TseI GCWGC 2 cut(s) 232, 1353
TspDTI ATGAA 6 cut(s) 251, 505, 656, 725, 823, 835
TspRI CASTG 1 cut(s) 949
Tth111I GACNNNGTC 1 cut(s) 1050
VpaK11BI GGWCC 1 cut(s) 1052
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 6 cut(s) 111, 212, 372, 512, 706, 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 6 cut(s) 129, 651, 798, 897, 1044, 1367
ZrmI AGTACT 2 cut(s) 74, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.