FvH4_2g33010

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24866900 .. 24870929
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33010.t1

Sequence Viewer

Length: 1821 bp
ATGGCTACAGTCAACATGTCCGGCGGGTCTTCTAATGGTGGGAAGGTAGAGAACAATCCAGGATACTTTAAGTTTGACGGTCGGCGCTCCTATGTCTTGGAGACTCTGGACGAAGAGAACAGAGAGCGCATCGATAAACTTAGAAAGATTCAGAGAGACCTTGATGTTATAAAGGCGGGGTTTCACAATGAGAGAGCAAATCTTGAAGCCAGCTTTCTGGAGTCTTGTGAACCTCTGTACCTCCAGAGATACAATATTGTGAATGGCGTGGTTGAAGAAGCTGGAATCACTACTAATGCTGCTGCACGAGCTACATCAATGAACCAGACCAAAAAACAGAAAGAAGGAGAAGGGGTGCCTAGTTTCTGGTTATATGCTCTGAAAGGATGTGACGACGTATATGATGAGATTAAGGAACAAGATGAAGGAGCTCTCAAACATCTTACGGACATTAAGTGGTCCAAGATACAAAAAGGATTCAGGCTTGAATTCCATTTCAGCACTAATCCCTTCTTTGAAAACCCTGTCTTGACCAAGACGTATCACATGACTGATGAAGATGGATTCTTTATAGAATGCGCAATAGGGACAGAGATTAAATGGCGTCCGGGAAAATGCTTGACACATAAGCTCGCCAAGGAATCTGGGAAGGGATCAAAGAAAGTCGAACCAATGACTATTGAGAGCTTCTTTGGCTTTTTCAGTCCACCTAACATCCCAAAGAACCTGAAAGATGAGAAAAATCTTGTTGAGGTCATAAATCAGAAATACGATATGGAAATGGATTTTTGCTTGGGGTTGACCATTCGAGATCAGATCATCCCATGCGCCGTTACACAGTTTACAGGAAAGGCTGCACTGGAGGATAAGACCAAAATATCTGCGCAGCACTCCAATTTCCTTGACAATCTAGGAAAAAATGCCAGAAAATGTGTTGAAAGTCTTAGACTAATCCAGGAAAAACTTGATGCATTGACAGCAGAATTTGACGAGAATACAGCATCAGTTCAAGCAAAATATCTTCAATCATGTGAACATTTGTATCTACAGCGACACAATATCGTAAATGATCCTGAAGCAGATGGAGTTGGCAGTGATTATGAAGATGAAGCATATATATATGGGAAAGGGGTGCCTTACTTCTGGCTCAATGCTTTGCAAAACAATGACTACATAGAAAATGAGATTACTTATCGTGATGAACAAGCTCTAAAGTATCTTAAAGACATCAAGTCTTCCCCCATTGATGACTCCGAGGGCTTCAAACTTGACTTCTGCTTTAAAGCCAATCCCTTCTTTGAAAATTCTGTCTTGACCAAGACATTCCTCATGAGTGTTGAGAATGATATATCCCTAGTGAAAGATATAAAAGGGACTGAGATTGAATGGTATCCGGCAAGATGCTTGACAACGATACCTATTAAGAAGAAACCTGAGACACAATCAGAGGATGCGAAATCGATCACTGTAACTGAAGATTGTGACAGTTTCTTCTCTCTTTTTGGTGCACTTGAAGTGGTAGATGATAACTTCAAGCGTTCACGTCAGGCGGAACATGATTTTCATATTGGGTTAATTATCCGAGATCAGATTATTCCCCATGCAGTTTCTTGGTTTACAGGGGAGGCTATTGAGAACAGAGATGACTTACAAGACGATGAAGACCAAGACCAGTACCTTGGATTTGAAGCAGAATATTATGATGATAACGAAGATGGCGATGATGAGTACGAAGACCTTGACCATGGATTAGGCTCTGATGGAGACGACTCTGATGAAGAATACATTGATAATTACAATAGAACATACAATTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

69.49

Weight (kDa)

4.63

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 43 - 284 1.2e-63 Nucleosome assembly protein (NAP)
NAP PF00956 312 - 542 3.8e-57 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
Acc16I TGCGCA 2 cut(s) 580, 885
AccB1I GGYRCC 2 cut(s) 355, 1132
AciI CCGC 3 cut(s) 24, 176, 1550
AclWI GGATC 2 cut(s) 661, 1064
AcsI RAATTY 3 cut(s) 488, 983, 1303
AcuI CTGAAG 2 cut(s) 1095, 1494
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 3 cut(s) 239, 1676, 1730
AflIII ACRYGT 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 1231
AjiI CACGTC 1 cut(s) 1544
AjnI CCWGG 2 cut(s) 58, 954
AluBI AGCT 7 cut(s) 213, 281, 311, 431, 631, 687, 1208
AluI AGCT 7 cut(s) 213, 281, 311, 431, 631, 687, 1208
Alw21I GWGCWC 2 cut(s) 433, 1510
Alw26I GTCTC 4 cut(s) 95, 150, 1430, 1758
Alw44I GTGCAC 1 cut(s) 1506
AlwI GGATC 2 cut(s) 661, 1064
ApaLI GTGCAC 1 cut(s) 1506
ApeKI GCWGC 4 cut(s) 299, 302, 854, 886
ApoI RAATTY 3 cut(s) 488, 983, 1303
AspLEI GCGC 5 cut(s) 87, 129, 581, 830, 886
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 609
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 1510
BaeI ACNNNNGTAYC 4 cut(s) 221, 254, 1025, 1058
BanI GGYRCC 2 cut(s) 355, 1132
BanII GRGCYC 1 cut(s) 433
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 4 cut(s) 21, 1227, 1668, 1740
Bbv12I GWGCWC 2 cut(s) 433, 1510
BbvI GCAGC 4 cut(s) 286, 289, 841, 898
BccI CCATC 4 cut(s) 554, 1076, 1709, 1754
BceAI ACGGC 1 cut(s) 815
BciT130I CCWGG 2 cut(s) 60, 956
BciVI GTATCC 2 cut(s) 56, 1401
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 4 cut(s) 95, 150, 1430, 1758
BfaI CTAG 3 cut(s) 360, 911, 1355
BfmI CTRYAG 2 cut(s) 6, 1046
BfoI RGCGCY 1 cut(s) 88
BfuI GTATCC 2 cut(s) 56, 1401
BisI GCNGC 4 cut(s) 300, 303, 855, 887
BlsI GCNGC 4 cut(s) 301, 304, 856, 888
Bme1390I CCNGG 3 cut(s) 60, 609, 956
Bme18I GGWCC 1 cut(s) 459
BmeRI GACNNNNNGTC 1 cut(s) 1231
BmgBI CACGTC 1 cut(s) 1544
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 357, 1134
BmrFI CCNGG 3 cut(s) 60, 609, 956
BmsI GCATC 5 cut(s) 138, 958, 1010, 1391, 1441
BpiI GAAGAC 4 cut(s) 21, 1227, 1668, 1740
BpmI CTGGAG 3 cut(s) 227, 239, 881
BpuMI CCSGG 1 cut(s) 609
Bsa29I ATCGAT 2 cut(s) 132, 1460
BsaHI GRCGYC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 636, 1254, 1678, 1744
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bse1I ACTGG 2 cut(s) 864, 1672
BseBI CCWGG 2 cut(s) 60, 956
BseCI ATCGAT 2 cut(s) 132, 1460
BseDI CCNNGG 4 cut(s) 636, 1254, 1678, 1744
BseGI GGATG 4 cut(s) 392, 714, 819, 1456
BseMII CTCAG 2 cut(s) 1368, 1425
BseNI ACTGG 2 cut(s) 864, 1672
BseSI GKGCMC 1 cut(s) 1510
BseXI GCAGC 4 cut(s) 286, 289, 841, 898
BsgI GTGCAG 2 cut(s) 288, 840
Bsh1285I CGRYCG 1 cut(s) 82
BshNI GGYRCC 2 cut(s) 355, 1132
BshVI ATCGAT 2 cut(s) 132, 1460
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 433, 1510
BsiSI CCGG 3 cut(s) 21, 608, 1394
BslFI GGGAC 2 cut(s) 601, 1387
BsmAI GTCTC 4 cut(s) 95, 150, 1430, 1758
BsmBI CGTCTC 1 cut(s) 1758
BsmFI GGGAC 2 cut(s) 601, 1387
BsmI GAATGC 1 cut(s) 581
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 433, 1510
Bsp143I GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
Bsp19I CCATGG 1 cut(s) 1744
BspACI CCGC 3 cut(s) 24, 176, 1550
BspCNI CTCAG 2 cut(s) 1369, 1426
BspDI ATCGAT 2 cut(s) 132, 1460
BspHI TCATGA 1 cut(s) 1329
BspLI GGNNCC 2 cut(s) 357, 1134
BspPI GGATC 2 cut(s) 661, 1064
BspT107I GGYRCC 2 cut(s) 355, 1132
BspTNI GGTCTC 1 cut(s) 150
BsrI ACTGG 2 cut(s) 864, 1672
BssECI CCNNGG 4 cut(s) 636, 1254, 1678, 1744
BssMI GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
BssNI GRCGYC 1 cut(s) 604
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 3 cut(s) 636, 1678, 1744
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 60, 956
Bst4CI ACNGT 5 cut(s) 10, 80, 840, 1468, 1487
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 211, 633
BstDEI CTNAG 4 cut(s) 140, 944, 1377, 1434
BstDSI CCRYGG 1 cut(s) 1744
BstF5I GGATG 4 cut(s) 392, 714, 819, 1456
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 5 cut(s) 87, 129, 581, 830, 886
BstKTI GATC 6 cut(s) 656, 814, 819, 1072, 1464, 1588
BstMAI GTCTC 4 cut(s) 95, 150, 1430, 1758
BstMBI GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 308, 693, 977
BstNI CCWGG 2 cut(s) 60, 956
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 58, 607, 954
BstSFI CTRYAG 2 cut(s) 6, 1046
BstSLI GKGCMC 1 cut(s) 1510
BstV1I GCAGC 4 cut(s) 286, 289, 841, 898
BstV2I GAAGAC 4 cut(s) 21, 1227, 1668, 1740
BstXI CCANNNNNNTGG 2 cut(s) 217, 1679
Bsu15I ATCGAT 2 cut(s) 132, 1460
BsuI GTATCC 2 cut(s) 56, 1401
BsuTUI ATCGAT 2 cut(s) 132, 1460
BtgI CCRYGG 1 cut(s) 1744
BtgZI GCGATG 1 cut(s) 1734
BtrI CACGTC 1 cut(s) 1544
BtsCI GGATG 4 cut(s) 392, 714, 819, 1456
BtsI GCAGTG 1 cut(s) 1099
BtsIMutI CAGTG 3 cut(s) 857, 1099, 1464
Cac8I GCNNGC 2 cut(s) 211, 633
CciI TCATGA 1 cut(s) 1329
CfoI GCGC 5 cut(s) 87, 129, 581, 830, 886
Cfr13I GGNCC 1 cut(s) 459
ClaI ATCGAT 2 cut(s) 132, 1460
CseI GACGC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 238, 1675, 1729
CviAII CATG 8 cut(s) 16, 547, 825, 1029, 1330, 1556, 1601, 1745
CviQI GTAC 3 cut(s) 238, 1675, 1729
DdeI CTNAG 4 cut(s) 140, 944, 1377, 1434
DpnI GATC 6 cut(s) 655, 813, 818, 1071, 1463, 1587
DpnII GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
DraI TTTAAA 1 cut(s) 1282
DriI GACNNNNNGTC 1 cut(s) 1231
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 1231
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 1565
Ecl136II GAGCTC 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 636, 1678, 1744
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 1095, 1494
EcoICRI GAGCTC 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 58, 954
EcoT14I CCWWGG 3 cut(s) 636, 1678, 1744
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 3 cut(s) 636, 1678, 1744
Esp3I CGTCTC 1 cut(s) 1758
FaeI CATG 8 cut(s) 19, 550, 828, 1032, 1333, 1559, 1604, 1748
FaqI GGGAC 2 cut(s) 601, 1387
FatI CATG 8 cut(s) 15, 546, 824, 1028, 1329, 1555, 1600, 1744
FauI CCCGC 2 cut(s) 17, 169
Fnu4HI GCNGC 4 cut(s) 300, 303, 855, 887
FokI GGATG 4 cut(s) 399, 701, 806, 1463
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 300, 303, 855, 887
FspBI CTAG 3 cut(s) 360, 911, 1355
FspI TGCGCA 2 cut(s) 580, 885
GlaI GCGC 5 cut(s) 86, 128, 580, 829, 885
GluI GCNGC 4 cut(s) 300, 303, 855, 887
GsuI CTGGAG 3 cut(s) 227, 239, 881
HaeII RGCGCY 1 cut(s) 88
HapII CCGG 3 cut(s) 21, 608, 1394
HgaI GACGC 1 cut(s) 593
HhaI GCGC 5 cut(s) 87, 129, 581, 830, 886
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 8 cut(s) 19, 550, 828, 1032, 1333, 1559, 1604, 1748
Hin6I GCGC 5 cut(s) 85, 127, 579, 828, 884
HinP1I GCGC 5 cut(s) 85, 127, 579, 828, 884
HincII GTYRAC 2 cut(s) 13, 801
HindII GTYRAC 2 cut(s) 13, 801
HinfI GANTC 9 cut(s) 103, 148, 221, 285, 477, 564, 641, 1250, 1769
HpaII CCGG 3 cut(s) 21, 608, 1394
Hpy166II GTNNAC 9 cut(s) 13, 230, 707, 801, 843, 1034, 1508, 1541, 1617
Hpy8I GTNNAC 9 cut(s) 13, 230, 707, 801, 843, 1034, 1508, 1541, 1617
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 7 cut(s) 37, 338, 344, 419, 520, 643, 1303
HpyCH4III ACNGT 5 cut(s) 10, 80, 840, 1468, 1487
HpyCH4IV ACGT 3 cut(s) 396, 539, 1543
HpyCH4V TGCA 6 cut(s) 305, 857, 971, 1159, 1508, 1604
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 693, 977
HpyF3I CTNAG 4 cut(s) 140, 944, 1377, 1434
HpySE526I ACGT 3 cut(s) 396, 539, 1543
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 8 cut(s) 19, 550, 828, 1032, 1333, 1559, 1604, 1748
HspAI GCGC 5 cut(s) 85, 127, 579, 828, 884
Kzo9I GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
LmnI GCTCC 2 cut(s) 92, 428
Lsp1109I GCAGC 4 cut(s) 286, 289, 841, 898
LweI GCATC 5 cut(s) 138, 958, 1010, 1391, 1441
MaeI CTAG 3 cut(s) 360, 911, 1355
MaeII ACGT 3 cut(s) 396, 539, 1543
MaeIII GTNAC 4 cut(s) 389, 832, 1468, 1481
MalI GATC 6 cut(s) 655, 813, 818, 1071, 1463, 1587
MboI GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
MhlI GDGCHC 2 cut(s) 433, 1510
MluCI AATT 7 cut(s) 488, 895, 983, 1303, 1575, 1792, 1810
MlyI GAGTC 4 cut(s) 97, 230, 1244, 1763
MnlI CCTC 8 cut(s) 243, 251, 745, 856, 1249, 1337, 1441, 1618
Mph1103I ATGCAT 1 cut(s) 973
MseI TTAA 9 cut(s) 69, 411, 453, 597, 1221, 1281, 1422, 1574, 1819
MspI CCGG 3 cut(s) 21, 608, 1394
MspR9I CCNGG 3 cut(s) 60, 609, 956
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 60, 956
MwoI GCNNNNNNNGC 3 cut(s) 308, 693, 977
NciI CCSGG 1 cut(s) 609
NcoI CCATGG 1 cut(s) 1744
NdeII GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
NlaIII CATG 8 cut(s) 19, 550, 828, 1032, 1333, 1559, 1604, 1748
NlaIV GGNNCC 2 cut(s) 357, 1134
NmuCI GTSAC 2 cut(s) 389, 1481
NsbI TGCGCA 2 cut(s) 580, 885
NsiI ATGCAT 1 cut(s) 973
NspI RCATGY 1 cut(s) 19
PagI TCATGA 1 cut(s) 1329
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 1716
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 148, 285, 477, 564, 641
PfoI TCCNGGA 3 cut(s) 58, 607, 954
PkrI GCNGC 4 cut(s) 301, 304, 856, 888
PleI GAGTC 4 cut(s) 97, 229, 1244, 1763
PpsI GAGTC 4 cut(s) 97, 229, 1244, 1763
PscI ACATGT 1 cut(s) 15
PsiI TTATAA 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 58, 954
PspGI CCWGG 2 cut(s) 58, 954
PspN4I GGNNCC 2 cut(s) 357, 1134
PspPI GGNCC 1 cut(s) 459
RsaI GTAC 3 cut(s) 239, 1676, 1730
RsaNI GTAC 3 cut(s) 238, 1675, 1729
SacI GAGCTC 1 cut(s) 433
SaqAI TTAA 9 cut(s) 69, 411, 453, 597, 1221, 1281, 1422, 1574, 1819
SatI GCNGC 4 cut(s) 300, 303, 855, 887
Sau3AI GATC 6 cut(s) 653, 811, 816, 1069, 1461, 1585
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 4 cut(s) 97, 230, 1244, 1763
ScrFI CCNGG 3 cut(s) 60, 609, 956
SduI GDGCHC 2 cut(s) 433, 1510
SfaNI GCATC 5 cut(s) 138, 958, 1010, 1391, 1441
SfcI CTRYAG 2 cut(s) 6, 1046
SinI GGWCC 1 cut(s) 459
Sse9I AATT 7 cut(s) 488, 895, 983, 1303, 1575, 1792, 1810
SsiI CCGC 3 cut(s) 24, 176, 1550
SspI AATATT 2 cut(s) 256, 1697
SspMI CTAG 3 cut(s) 360, 911, 1355
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 3 cut(s) 58, 607, 954
StyI CCWWGG 3 cut(s) 636, 1678, 1744
TaaI ACNGT 5 cut(s) 10, 80, 840, 1468, 1487
TaiI ACGT 3 cut(s) 399, 542, 1546
TaqI TCGA 4 cut(s) 132, 666, 808, 1460
TasI AATT 7 cut(s) 488, 895, 983, 1303, 1575, 1792, 1810
TfiI GAWTC 5 cut(s) 148, 285, 477, 564, 641
Tru1I TTAA 9 cut(s) 69, 411, 453, 597, 1221, 1281, 1422, 1574, 1819
Tru9I TTAA 9 cut(s) 69, 411, 453, 597, 1221, 1281, 1422, 1574, 1819
TscAI CASTG 3 cut(s) 864, 1099, 1471
TseFI GTSAC 2 cut(s) 389, 1481
TseI GCWGC 4 cut(s) 299, 302, 854, 886
Tsp45I GTSAC 2 cut(s) 389, 1481
TspDTI ATGAA 9 cut(s) 335, 438, 570, 1116, 1122, 1215, 1553, 1674, 1791
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 3 cut(s) 864, 1099, 1471
VneI GTGCAC 1 cut(s) 1506
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 3 cut(s) 488, 983, 1303
XceI RCATGY 1 cut(s) 19
XspI CTAG 3 cut(s) 360, 911, 1355
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.