Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

21901068 .. 21908324

Gene Structure 7257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAGAAAAGAGCAAAGGTGGAGATGGTAGCTCGATTGGTAATGATTCAAAAAGATCAATAGGACCGATTTTCAGCACTTTTGTTTATGAGGAAGGATCTGAAAATGATTTGTTAACCATTCGAGATGAGATCATCCCACGTGCCGTTTCATGGTTTATGGGGGAGGCTGGACTGGAGGAGAATACCCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAAAAAAATGTCAGGGAGTGTGTTGGAAGTCTAAAATTGATCTAGCACATCATATCAATAATGTGGTGGCGCAGGTTTTGGAGGCATTTTCCTTAATTGATGTTAGAAGGCACTTTATTGAGACATTAGCCCTTCAGTTTGGAAGACCAGTAAAAGCTGATTCGAAAGGCAACATTTCTAGCTGCTTCTGGAGTTCTCACATTCCTGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGAGGAGGTGGGTGTTGGTGCATACTGTTTCTCGTTTATAATGTTTACATGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

5.52

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	347
AcvI	CACGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	153, 440
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	3 cut(s)	33, 386, 411
AluI	AGCT	3 cut(s)	33, 386, 411
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	445
BbrPI	CACGTG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	272, 408
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	197, 439
Bpu14I	TTCGAA	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 440
Bse1I	ACTGG	2 cut(s)	180, 377
Bse3DI	GCAATG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	153, 440
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	180, 377
BseRI	GAGGAG	2 cut(s)	194, 509
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	153, 440
BsmAI	GTCTC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	56, 98, 132, 268
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	180, 377
BssMI	GATC	4 cut(s)	56, 98, 132, 268
Bst4CI	ACNGT	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	59, 101, 135, 271
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	4 cut(s)	56, 98, 132, 268
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	2 cut(s)	153, 540
CviJI	RGCY	6 cut(s)	33, 170, 359, 386, 411, 460
CviKI_1	RGCY	6 cut(s)	33, 170, 359, 386, 411, 460
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	4 cut(s)	58, 100, 134, 270
DpnII	GATC	4 cut(s)	56, 98, 132, 268
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	347
Eco72I	CACGTG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	2 cut(s)	156, 543
FatI	CATG	2 cut(s)	152, 539
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	412
FspBI	CTAG	2 cut(s)	272, 408
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	412
GsuI	CTGGAG	2 cut(s)	197, 439
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	156, 543
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	47, 223, 389
HpaI	GTTAAC	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	117, 537
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	4 cut(s)	125, 220, 418, 434
Hpy8I	GTNNAC	2 cut(s)	117, 537
HpyAV	CCTTC	3 cut(s)	89, 330, 371
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	200, 467, 472, 512
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	156, 543
HspAI	GCGC	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	56, 98, 132, 268
LpnPI	CCDG	8 cut(s)	156, 161, 227, 287, 390, 403, 442, 447
Lsp1109I	GCAGC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	272, 408
MaeII	ACGT	1 cut(s)	142
MalI	GATC	4 cut(s)	58, 100, 134, 270
MboI	GATC	4 cut(s)	56, 98, 132, 268
MboII	GAAGA	1 cut(s)	384
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	3 cut(s)	211, 264, 324
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	85, 160, 172, 227, 304, 487, 490
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	2 cut(s)	116, 323
NdeII	GATC	4 cut(s)	56, 98, 132, 268
NlaIII	CATG	2 cut(s)	156, 543
NlaIV	GGNNCC	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	47, 223, 389
PkrI	GCNGC	1 cut(s)	413
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	116, 323
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	4 cut(s)	56, 98, 132, 268
Sau96I	GGNCC	1 cut(s)	65
SetI	ASST	7 cut(s)	22, 35, 145, 306, 388, 413, 501
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	211, 264, 324
SspMI	CTAG	2 cut(s)	272, 408
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	35, 124, 392
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	211, 264, 324
TfiI	GAWTC	3 cut(s)	47, 223, 389
Tru1I	TTAA	2 cut(s)	116, 323
Tru9I	TTAA	2 cut(s)	116, 323
TseI	GCWGC	1 cut(s)	411
TspDTI	ATGAA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	438
XspI	CTAG	2 cut(s)	272, 408
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.