Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

56926840 .. 56935090

Gene Structure 8251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCAGGAATCTTATTGCAGGAATGTCTTGCAAAGAATATTTGAGCTACTTTCCCTCTCAACTGATTTCCCCCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCACCTGAGGCTACTAAATGCCATCATGGCCGACGTCGCCACCTTGTCGTGTGCTCGTTGCAACAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGTCCACCTGAAATCCCAAAGAACCTGAATGATATGAAAGATACTGTTGAGGTCATAAATCTGAAAGACGAGATGGAAAGGGATTGTTTCTTTGGGTTGACCATTCGAGATGAGATCATCCCACATGCCGTTTCATGGTTTATGGGGGAGACTGGACTGGAGGAGAATACTCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAACAAAATGTCAGGGAGTGTGTTGGAAGTCTAAGATTGATCCAGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGAGGAGATTACTTATCGTGATGAGCGAGGGGTGGACAAGGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

200

Amino Acids

22.74

Weight (kDa)

4.89

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	81 - 131	1.3e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	162 - 194	9.2e-06	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	508
AciI	CCGC	2 cut(s)	183, 237
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	378, 503
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	3 cut(s)	46, 113, 220
AluI	AGCT	3 cut(s)	46, 113, 220
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	110, 386
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	169
BccI	CCATC	2 cut(s)	143, 310
BceAI	ACGGC	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	110, 386
BfaI	CTAG	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 503
Bse1I	ACTGG	2 cut(s)	400, 405
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	378, 503
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	400, 405
BseRI	GAGGAG	4 cut(s)	85, 88, 419, 572
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	378, 503
BsmAI	GTCTC	2 cut(s)	110, 386
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	357, 493
BspACI	CCGC	2 cut(s)	183, 237
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	400, 405
BssMI	GATC	2 cut(s)	357, 493
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	119, 486
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	360, 496
BstMAI	GTCTC	2 cut(s)	110, 386
BstMBI	GATC	2 cut(s)	357, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstNSI	RCATGY	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	200
CviAII	CATG	3 cut(s)	139, 368, 378
CviJI	RGCY	7 cut(s)	46, 90, 113, 124, 143, 220, 523
CviKI_1	RGCY	7 cut(s)	46, 90, 113, 124, 143, 220, 523
DdeI	CTNAG	2 cut(s)	119, 486
DpnI	GATC	2 cut(s)	359, 495
DpnII	GATC	2 cut(s)	357, 493
EaeI	YGGCCR	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	532
FaeI	CATG	3 cut(s)	142, 371, 381
FaiI	YATR	9 cut(s)	140, 278, 299, 369, 379, 386, 528, 549, 551
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	138, 367, 377
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	142, 371, 381
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	8, 448
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	248, 342, 589
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	5 cut(s)	227, 350, 445, 497, 572
Hpy8I	GTNNAC	3 cut(s)	248, 342, 589
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	7 cut(s)	4, 18, 31, 174, 425, 530, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpyF3I	CTNAG	2 cut(s)	119, 486
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	142, 371, 381
Kzo9I	GATC	2 cut(s)	357, 493
LpnPI	CCDG	9 cut(s)	4, 131, 264, 281, 381, 386, 452, 505, 510
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	147
MalI	GATC	2 cut(s)	359, 495
MboI	GATC	2 cut(s)	357, 493
MboII	GAAGA	2 cut(s)	182, 242
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	212, 436
MmeI	TCCRAC	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NdeII	GATC	2 cut(s)	357, 493
NlaIII	CATG	3 cut(s)	142, 371, 381
NlaIV	GGNNCC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	8, 448
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	510
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	357, 493
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	9 cut(s)	48, 115, 120, 150, 158, 222, 253, 270, 297
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	212, 436
SsiI	CCGC	2 cut(s)	183, 237
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	212, 436
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	8, 448
TscAI	CASTG	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	293, 366
TspRI	CASTG	1 cut(s)	200
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.