Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

46881659 .. 46883016

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGCCACCTTGTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGGAAAGGAGTGCCTAATTTCTGGCTGTATGCTTTAAAAGGTCGTGCCATGTTAGATGCTCAGACTACGGATCAAGATGAAAGAGCTCTCAAGCATCTTACAGACATTAAATGGTCCAGGATACAGAAAGGGTTCAGACTTGAATTCTATTTTCACACTAACCCTTTCTTTGAAAACCCTGTCTTGACCAAGATGTATCACATGAATGATGAAGATGAATTCTTTCTAGAATCTGCAACAGGGACAGAAATTGCATGGCATCCAGAAAAATGCTTGACACAGAAGCTCAATAAGATATTTGGGAAGGGATCAAAGAAAGCTAAGCCAATGACTAATAAAAGCTTCTTTGGCTTTTTCAGTCCACCTGAAATCCCAAAGAACCTAAAAGATATGAAAGATACTGTTGAGGTCATAAATCTGAAAGACGAGATGGAAAGGGATTGTTTCTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

167

Amino Acids

19.49

Weight (kDa)

8.71

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	17 - 153	3.3e-39	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	126, 364
AcsI	RAATTY	2 cut(s)	191, 266
AcuI	CTGAAG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	191, 221
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	134, 334, 368, 390
AluI	AGCT	4 cut(s)	134, 334, 368, 390
Alw21I	GWGCWC	2 cut(s)	24, 136
AlwI	GGATC	2 cut(s)	126, 364
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	191, 266
Asp700I	GAANNNNTTC	2 cut(s)	179, 270
AspS9I	GGNCC	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	24, 136
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	94, 151, 316
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	24, 136
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	24, 136
Bsp143I	GATC	2 cut(s)	118, 356
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	2 cut(s)	126, 364
BssMI	GATC	2 cut(s)	118, 356
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	108, 369
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	121, 359
BstMBI	GATC	2 cut(s)	118, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	3 cut(s)	97, 250, 303
CviJI	RGCY	7 cut(s)	73, 134, 334, 368, 373, 390, 399
CviKI_1	RGCY	7 cut(s)	73, 134, 334, 368, 373, 390, 399
DdeI	CTNAG	2 cut(s)	108, 369
DpnI	GATC	2 cut(s)	120, 358
DpnII	GATC	2 cut(s)	118, 356
DraI	TTTAAA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	2 cut(s)	191, 266
EcoRII	CCWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	3 cut(s)	100, 253, 306
FaiI	YATR	6 cut(s)	78, 98, 251, 304, 440, 461
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	96, 249, 302
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	100, 253, 306
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	111, 185, 468
Hpy188III	TCNNGA	5 cut(s)	49, 122, 232, 275, 311
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	29, 284, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	2 cut(s)	108, 369
Hsp92II	CATG	3 cut(s)	100, 253, 306
Kzo9I	GATC	2 cut(s)	118, 356
LpnPI	CCDG	8 cut(s)	34, 55, 151, 178, 240, 273, 324, 426
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	94, 151, 316
MaeI	CTAG	1 cut(s)	275
MalI	GATC	2 cut(s)	120, 358
MboI	GATC	2 cut(s)	118, 356
MboII	GAAGA	2 cut(s)	37, 272
MhlI	GDGCHC	2 cut(s)	24, 136
MluCI	AATT	4 cut(s)	64, 191, 266, 297
MnlI	CCTC	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	179, 270
MseI	TTAA	2 cut(s)	83, 156
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeII	GATC	2 cut(s)	118, 356
NlaIII	CATG	3 cut(s)	100, 253, 306
PdmI	GAANNNNTTC	2 cut(s)	179, 270
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	83, 156
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	118, 356
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	24, 136
SetI	ASST	9 cut(s)	13, 91, 136, 336, 370, 392, 415, 432, 459
SfaNI	GCATC	3 cut(s)	94, 151, 316
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	64, 191, 266, 297
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	451
TasI	AATT	4 cut(s)	64, 191, 266, 297
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	83, 156
Tru9I	TTAA	2 cut(s)	83, 156
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	5 cut(s)	141, 266, 273, 279, 455
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	191, 266
XbaI	TCTAGA	1 cut(s)	274
XmnI	GAANNNNTTC	2 cut(s)	179, 270
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.