Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

5725642 .. 5729047

Gene Structure 3406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGCAACGACATGCACGTGTCTGATCTCGGCTCTTGTGTTGGGAACGGAGATGATCAACCAGCCCTTAATCCAAGCAAGCTCCAAAGGTTCCCACCGGATACCAGAAGGCGCATTGAGCATCTTATACAGATACAGAAAGACCATGATGAGTTAAAGGCACAGTTTTACAAGGATCGAGGAGCACTCGAAGCTAAATATGAGAAAGTATTCTATCAGCCTCTGTACGACAAGAGATACAATATTGTGAACGGAATTGGAGTAACTACTAGTTCTGAATCACCAACAACAAATCAAGAGGACAAAGGGATTCCTGAATTTTGGTTCTTTGCTATGAAAGGCTTAACTGAGACAAGCAAAATGATTCATGCCTATGATGAAGGAGCTCTCAAGTATCTTGAAGACATCAAGTGGCTTTGGACAGATAACCATAAGGGTTTTAAACTGGAGTTCTACTTTGGTCCTAACCCTTTCTTCAAAAACTCTGTTTTGACCCTGACATATCATATGACTGATGAAGATGAATCCATTATGGAGAAAATAATAGGGACTGAAATAGAGTGGTCTTCTGAAGGTCGACACTTGAAGAAACGTAGAACTGGTAACCGTAGAATATTCTTTGATCTTTTTAGTCCACCTGAAGTTCACAATGACTATAAAGACCTAAAACTCAAATATATGTTGCAAGAAGACTATTTAATTGGGTCAAGTATTCGAGATGATATAATCCCTCGTGCTGTTTTATGGTTTACGGGAGAGGCTAGGCTAGAACAGTATGAAGAGATGTTAGAAAGCCATGAATCTTTCCTTAATAACCTATCACAGGATGTCCAAAAGCGAGTTGACCTTCTTATAAAAATTCAGAAAGATCACGATGGATTAAAGGCACAATTTTACAGGGAAAGAGCAGAACTTGAAGCTAACTATCGGAAAGCGTATACTAACATGTACAACAAGCGATATGGGATTGTAAATGGTCTTGTTGAAGCTGAAAAATTGACCAAGCAAGACTCTAGAGTAGTAAATCAAGAGGTTGATGCAGGTACACTCTTGACGTGTGTGTGTGTATATATATATATCACTTTGCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

365

Amino Acids

42.76

Weight (kDa)

5.88

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	37 - 253	3.3e-54	Nucleosome assembly protein (NAP)
NAP	PF00956	279 - 333	1.7e-09	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	1031
AccI	GTMKAC	2 cut(s)	577, 938
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	317, 858
AcuI	CTGAAG	2 cut(s)	591, 660
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	227, 950, 1045
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflIII	ACRYGT	3 cut(s)	18, 945, 1055
AgsI	TTSAA	5 cut(s)	401, 478, 586, 917, 986
AhlI	ACTAGT	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	1056
AluBI	AGCT	5 cut(s)	82, 194, 386, 920, 989
AluI	AGCT	5 cut(s)	82, 194, 386, 920, 989
Alw21I	GWGCWC	2 cut(s)	187, 388
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	223
ApoI	RAATTY	2 cut(s)	317, 858
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	732
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	3 cut(s)	408, 558, 696
Bbv12I	GWGCWC	2 cut(s)	187, 388
BccI	CCATC	1 cut(s)	869
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	344
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	4 cut(s)	270, 762, 767, 1014
BfuAI	ACCTGC	1 cut(s)	1031
BfuI	GTATCC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	1056
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	92
BmsI	GCATC	2 cut(s)	130, 1027
BpiI	GAAGAC	3 cut(s)	408, 558, 696
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	2 cut(s)	450, 604
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	450, 604
BseRI	GAGGAG	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	187, 388
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	562
Bsp1286I	GDGCHC	2 cut(s)	187, 388
Bsp1407I	TGTACA	1 cut(s)	948
Bsp143I	GATC	5 cut(s)	25, 55, 175, 622, 868
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	948
BsrI	ACTGG	2 cut(s)	450, 604
BssMI	GATC	5 cut(s)	25, 55, 175, 622, 868
BssNAI	GTATAC	1 cut(s)	939
BssSI	CACGAG	1 cut(s)	732
Bst1107I	GTATAC	1 cut(s)	939
Bst2BI	CACGAG	1 cut(s)	732
Bst4CI	ACNGT	3 cut(s)	165, 608, 774
Bst6I	CTCTTC	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	948
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	5 cut(s)	28, 58, 178, 625, 871
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	25, 55, 175, 622, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 191
BstNSI	RCATGY	2 cut(s)	16, 949
BstPI	GGTNACC	1 cut(s)	602
BstV2I	GAAGAC	3 cut(s)	408, 558, 696
BstZ17I	GTATAC	1 cut(s)	939
BsuI	GTATCC	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	1056
BtsCI	GGATG	1 cut(s)	832
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	226, 949, 1044
CviAII	CATG	5 cut(s)	13, 146, 368, 797, 946
CviQI	GTAC	3 cut(s)	226, 949, 1044
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	5 cut(s)	27, 57, 177, 624, 870
DpnII	GATC	5 cut(s)	25, 55, 175, 622, 868
DraI	TTTAAA	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	591, 660
Eco72I	CACGTG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	5 cut(s)	16, 149, 371, 800, 949
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	5 cut(s)	12, 145, 367, 796, 945
FauNDI	CATATG	1 cut(s)	507
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	2 cut(s)	577, 938
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	4 cut(s)	270, 762, 767, 1014
GlaI	GCGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	467
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	16, 149, 371, 800, 949
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	578, 844
HindII	GTYRAC	2 cut(s)	578, 844
HinfI	GANTC	6 cut(s)	278, 310, 364, 524, 800, 1010
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	8 cut(s)	250, 578, 635, 646, 750, 844, 939, 1046
Hpy188I	TCNGA	5 cut(s)	25, 277, 571, 864, 930
Hpy188III	TCNNGA	8 cut(s)	296, 314, 398, 716, 872, 1014, 1028, 1051
Hpy8I	GTNNAC	8 cut(s)	250, 578, 635, 646, 750, 844, 939, 1046
HpyAV	CCTTC	4 cut(s)	102, 374, 566, 857
HpyCH4III	ACNGT	3 cut(s)	165, 608, 774
HpyCH4IV	ACGT	3 cut(s)	18, 592, 1055
HpyCH4V	TGCA	3 cut(s)	16, 685, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 191
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	3 cut(s)	18, 592, 1055
Hsp92II	CATG	5 cut(s)	16, 149, 371, 800, 949
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	25, 55, 175, 622, 868
LmnI	GCTCC	3 cut(s)	87, 182, 383
LweI	GCATC	2 cut(s)	130, 1027
MaeI	CTAG	4 cut(s)	270, 762, 767, 1014
MaeII	ACGT	3 cut(s)	18, 592, 1055
MaeIII	GTNAC	2 cut(s)	262, 602
MalI	GATC	5 cut(s)	27, 57, 177, 624, 870
MboI	GATC	5 cut(s)	25, 55, 175, 622, 868
MboII	GAAGA	7 cut(s)	413, 466, 530, 558, 598, 701, 791
MhlI	GDGCHC	2 cut(s)	187, 388
MluCI	AATT	6 cut(s)	255, 317, 699, 858, 890, 995
MlyI	GAGTC	1 cut(s)	1004
MnlI	CCTC	6 cut(s)	173, 231, 292, 741, 751, 1024
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	7 cut(s)	69, 155, 344, 441, 698, 810, 881
MslI	CAYNNNNRTG	2 cut(s)	17, 372
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	118, 191
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	5 cut(s)	25, 55, 175, 622, 868
NlaIII	CATG	5 cut(s)	16, 149, 371, 800, 949
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	2 cut(s)	16, 949
PciI	ACATGT	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	5 cut(s)	278, 310, 364, 524, 800
PleI	GAGTC	1 cut(s)	1004
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	1004
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	945
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	3 cut(s)	227, 950, 1045
RsaNI	GTAC	3 cut(s)	226, 949, 1044
RseI	CAYNNNNRTG	2 cut(s)	17, 372
SacI	GAGCTC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	576
SaqAI	TTAA	7 cut(s)	69, 155, 344, 441, 698, 810, 881
Sau3AI	GATC	5 cut(s)	25, 55, 175, 622, 868
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	1004
SduI	GDGCHC	2 cut(s)	187, 388
SfaNI	GCATC	2 cut(s)	130, 1027
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	17, 372
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	6 cut(s)	255, 317, 699, 858, 890, 995
SspI	AATATT	2 cut(s)	244, 615
SspMI	CTAG	4 cut(s)	270, 762, 767, 1014
SstI	GAGCTC	1 cut(s)	388
TaaI	ACNGT	3 cut(s)	165, 608, 774
TaiI	ACGT	3 cut(s)	21, 595, 1058
TaqI	TCGA	4 cut(s)	178, 189, 577, 715
TasI	AATT	6 cut(s)	255, 317, 699, 858, 890, 995
TatI	WGTACW	1 cut(s)	948
TfiI	GAWTC	5 cut(s)	278, 310, 364, 524, 800
Tru1I	TTAA	7 cut(s)	69, 155, 344, 441, 698, 810, 881
Tru9I	TTAA	7 cut(s)	69, 155, 344, 441, 698, 810, 881
TspDTI	ATGAA	7 cut(s)	350, 356, 393, 531, 537, 792, 813
TspGWI	ACGGA	2 cut(s)	63, 267
VpaK11BI	GGWCC	1 cut(s)	461
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	317, 858
XbaI	TCTAGA	1 cut(s)	1013
XceI	RCATGY	2 cut(s)	16, 949
XmiI	GTMKAC	2 cut(s)	577, 938
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	4 cut(s)	270, 762, 767, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.