FvH4_7g30720

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001465
Physical Location & Seq
Forward (+)
22301431 .. 22305990
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30720.t1

Sequence Viewer

Length: 1593 bp
ATGGCTGAAGACATCAGTCCGTCCGATCACTGCTCTTGTGTTGGGAATGAAGATAATCAACCTGGTCTTAATCCAAACAAGAACAATGAACTCCACCGGATCTCACCAGATGCCCGAAAGCGCATTCAGTATCTGATACAGATACAAAAGGACCATGATGAACTAAAGGCACAGTTTTACAAGGATCGTGGAGCACTTGAAGCTAAATATGATGAACTCTATCAGCCTCTGTATGACAAGAGATATAATATCGTAAACGCGATTGGAGTTGATACTGAACCTGAAACAACAAATCAAGAAGAAAGGGGGATTCCTAATTTTTGGCTCTATGCTTTGAGAGCTTGTAATGCGATAAATAAATACATTGAACACTATGATGAAGGAGCTCTCAAACATCTTGAAAACATCAAGTGGCATAGGACACAAAACCTTAAGGGTTTCAAACTCGAGTTCTACTTTCGTCCAAACCCCTTTTTCAGAAACTCGGTTTTAACCGTGACATATCATATGCTTGATGAAGACGAATGCCTTATAGATGAAATAGTAAGGACGGAAATTCAGTGGTATCCAAAAAAGCGGTTGACGAAGCGAAGAAGTTTCTTCAAAATTTTTAATCCAATTGAAGTCGATAGTAACTACAAAGACCGAGTAATAAAGAGTGTACTGGAAGGAAACTATCTACTTGGCTCTATCATTCGGGATGATATAATCTCTCGTGCTGTATTATGGTTTACGGGGAAGGCTTGCGGAGAAGGGCTGCCTAATATGACAACAATTCATTCATGTTTCCTCAAGAACCTATCACTGGATGTTCAGAAGCGTGTTGACCATCTTAGAAACATTCAGAGAGAATATGATGGATTAAAGGCAAAGTTTTACAGGGAAAGAGCAGAACTTGAAGCCAAGTATCAGAGATTTTATGATAAAATCTACAATGAGCGATGTGGGATTGTAAATGGTGTTGTTGAAGCTGAAAAAGGGATTAATGATTCTGAAGCAGTAAATCAAGAGCTTGCTCCCCAAGAGAAAGGCGTGCCTAGCTTCTGGTACCATGCTATGGTAAACCATGAGTTGCTAGATTCGGAGATTACTGCTCGTGATGGAGAAGCTCTCAAGTATCTTTCAGACATCAAGTGGTTGAGAAAAGATGACTCCAAGGGTTTCATACTTGAGTTTTGCTTTCACGACAACCCTTTCTTTAAAAACTCTGTCCTGACCAAGATGTATGAGTTTCTTGATGTTGATGAAACCATTCTATACAAAGCGATAGGGATGGAGATTGATTGGTATCCCGAAAACTGTTTGACAAATGAAAGTGAAAGTTTCTTCAACTTTTTCCATCCCCTTGAAATTGATTTATGGGCAAAGATGGAACTCAGAGAAGACATGAGTCGAGATTATTACATTGGGTCAACCATTCGCAACCATATCATCCCTCGTGCTGTTTTATGGTACTTAGACGAGGCTGTTCCAGGAGATAAGGTGGTTGGTGTTACAGACTCAGAAACGGATGAATATGATCCGGACATAGATGAAATCACTGAAGATGAAGACGAGAGTGAAAATGAAGATAATATAGGAAGAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

531

Amino Acids

62.4

Weight (kDa)

4.97

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 40 - 197 6.7e-43 Nucleosome assembly protein (NAP)
NAP PF00956 195 - 247 2.3e-08 Nucleosome assembly protein (NAP)
NAP PF00956 273 - 438 2.6e-44 Nucleosome assembly protein (NAP)
NAP PF00956 437 - 488 4.9e-10 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 1047
AccB7I CCANNNNNTGG 1 cut(s) 1057
AccII CGCG 1 cut(s) 260
AccIII TCCGGA 1 cut(s) 1522
AciI CCGC 2 cut(s) 577, 747
AclWI GGATC 3 cut(s) 107, 192, 1514
AcsI RAATTY 2 cut(s) 555, 606
AcuI CTGAAG 3 cut(s) 27, 1014, 1563
AfaI GTAC 3 cut(s) 663, 1049, 1454
AfiI CCNNNNNNNGG 2 cut(s) 805, 1057
AflII CTTAAG 1 cut(s) 431
AjnI CCWGG 2 cut(s) 61, 1471
AluBI AGCT 7 cut(s) 203, 341, 386, 971, 1012, 1041, 1109
AluI AGCT 7 cut(s) 203, 341, 386, 971, 1012, 1041, 1109
Alw21I GWGCWC 2 cut(s) 196, 388
AlwI GGATC 3 cut(s) 107, 192, 1514
AlwNI CAGNNNCTG 2 cut(s) 133, 229
Ama87I CYCGRG 1 cut(s) 446
Aor13HI TCCGGA 1 cut(s) 1522
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 2 cut(s) 555, 606
AseI ATTAAT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 1251
Asp718I GGTACC 1 cut(s) 1047
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 1047
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 3 cut(s) 714, 1095, 1437
BbsI GAAGAC 4 cut(s) 15, 525, 1389, 1557
Bbv12I GWGCWC 2 cut(s) 196, 388
BbvI GCAGC 1 cut(s) 744
BccI CCATC 6 cut(s) 837, 851, 1094, 1267, 1347, 1363
BciT130I CCWGG 2 cut(s) 63, 1473
BciVI GTATCC 2 cut(s) 576, 1299
BfaI CTAG 2 cut(s) 1038, 1076
BfrI CTTAAG 1 cut(s) 431
BfuI GTATCC 2 cut(s) 576, 1299
BisI GCNGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 759
Bme1390I CCNGG 2 cut(s) 63, 1473
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 1049
BmrFI CCNGG 2 cut(s) 63, 1473
BmsI GCATC 1 cut(s) 100
BoxI GACNNNNGTC 2 cut(s) 15, 1389
BpiI GAAGAC 4 cut(s) 15, 525, 1389, 1557
BplI GAGNNNNNCTC 2 cut(s) 1095, 1127
BpuEI CTTGAG 3 cut(s) 776, 1097, 1190
BsaBI GATNNNNATC 1 cut(s) 1287
BsaJI CCNNGG 1 cut(s) 1155
BsaWI WCCGGW 2 cut(s) 96, 1522
BsaXI ACNNNNNCTCC 2 cut(s) 1467, 1497
Bsc4I CCNNNNNNNGG 2 cut(s) 805, 1057
Bse1I ACTGG 2 cut(s) 669, 810
Bse8I GATNNNNATC 1 cut(s) 1287
BseAI TCCGGA 1 cut(s) 1522
BseBI CCWGG 2 cut(s) 63, 1473
BseDI CCNNGG 1 cut(s) 1155
BseGI GGATG 6 cut(s) 706, 814, 1278, 1339, 1431, 1516
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 2 cut(s) 805, 1057
BseMII CTCAG 2 cut(s) 1390, 1515
BseNI ACTGG 2 cut(s) 669, 810
BseXI GCAGC 1 cut(s) 744
Bsh1236I CGCG 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 1047
BsiHKAI GWGCWC 2 cut(s) 196, 388
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 2 cut(s) 97, 1523
BslI CCNNNNNNNGG 2 cut(s) 805, 1057
BsmI GAATGC 2 cut(s) 123, 530
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 196, 388
Bsp13I TCCGGA 1 cut(s) 1522
Bsp143I GATC 4 cut(s) 25, 99, 184, 1519
BspACI CCGC 2 cut(s) 577, 747
BspCNI CTCAG 2 cut(s) 1389, 1514
BspEI TCCGGA 1 cut(s) 1522
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 1049
BspPI GGATC 3 cut(s) 107, 192, 1514
BspT107I GGYRCC 1 cut(s) 1047
BspTI CTTAAG 1 cut(s) 431
BsrI ACTGG 2 cut(s) 669, 810
BssECI CCNNGG 1 cut(s) 1155
BssMI GATC 4 cut(s) 25, 99, 184, 1519
BssSI CACGAG 3 cut(s) 714, 1095, 1437
BssT1I CCWWGG 1 cut(s) 1155
Bst2BI CACGAG 3 cut(s) 714, 1095, 1437
Bst2UI CCWGG 2 cut(s) 63, 1473
Bst4CI ACNGT 3 cut(s) 174, 496, 1301
Bst6I CTCTTC 1 cut(s) 1576
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 745, 1014, 1034
BstDEI CTNAG 4 cut(s) 833, 1376, 1456, 1501
BstF5I GGATG 6 cut(s) 706, 814, 1278, 1339, 1431, 1516
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 4 cut(s) 28, 102, 187, 1522
BstMBI GATC 4 cut(s) 25, 99, 184, 1519
BstMWI GCNNNNNNNGC 4 cut(s) 200, 338, 347, 1038
BstNI CCWGG 2 cut(s) 63, 1473
BstPAI GACNNNNGTC 2 cut(s) 15, 1389
BstSCI CCNGG 2 cut(s) 61, 1471
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 744
BstV2I GAAGAC 4 cut(s) 15, 525, 1389, 1557
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 2 cut(s) 576, 1299
BtgZI GCGATG 1 cut(s) 955
BtsCI GGATG 6 cut(s) 706, 814, 1278, 1339, 1431, 1516
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 4 cut(s) 28, 566, 803, 1539
Cac8I GCNNGC 3 cut(s) 745, 1014, 1034
CaiI CAGNNNCTG 2 cut(s) 133, 229
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 151
CsiI ACCWGGT 1 cut(s) 61
Csp6I GTAC 3 cut(s) 662, 1048, 1453
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 5 cut(s) 155, 783, 1052, 1067, 1387
CviQI GTAC 3 cut(s) 662, 1048, 1453
DdeI CTNAG 4 cut(s) 833, 1376, 1456, 1501
DpnI GATC 4 cut(s) 27, 101, 186, 1521
DpnII GATC 4 cut(s) 25, 99, 184, 1519
DraI TTTAAA 1 cut(s) 1201
Eam1104I CTCTTC 1 cut(s) 1576
EarI CTCTTC 1 cut(s) 1576
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 1155
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 3 cut(s) 27, 1014, 1563
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 61, 1471
EcoT14I CCWWGG 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 5 cut(s) 158, 786, 1055, 1070, 1390
FatI CATG 5 cut(s) 154, 782, 1051, 1066, 1386
FauNDI CATATG 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 6 cut(s) 713, 821, 1285, 1326, 1418, 1523
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 2 cut(s) 1038, 1076
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 758
HapII CCGG 2 cut(s) 97, 1523
HhaI GCGC 1 cut(s) 123
Hin1II CATG 5 cut(s) 158, 786, 1055, 1070, 1390
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 3 cut(s) 582, 826, 1413
HindII GTYRAC 3 cut(s) 582, 826, 1413
HinfI GANTC 6 cut(s) 310, 989, 1079, 1151, 1390, 1499
HpaII CCGG 2 cut(s) 97, 1523
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 7 cut(s) 256, 582, 662, 732, 826, 1063, 1413
Hpy8I GTNNAC 7 cut(s) 256, 582, 662, 732, 826, 1063, 1413
HpyAV CCTTC 4 cut(s) 374, 662, 733, 746
HpyCH4III ACNGT 3 cut(s) 174, 496, 1301
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 338, 347, 1038
HpyF3I CTNAG 4 cut(s) 833, 1376, 1456, 1501
Hsp92II CATG 5 cut(s) 158, 786, 1055, 1070, 1390
HspAI GCGC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 1522
KpnI GGTACC 1 cut(s) 1051
Kzo9I GATC 4 cut(s) 25, 99, 184, 1519
LmnI GCTCC 3 cut(s) 191, 383, 1021
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 1 cut(s) 61
MaeI CTAG 2 cut(s) 1038, 1076
MaeIII GTNAC 3 cut(s) 496, 632, 1492
MalI GATC 4 cut(s) 27, 101, 186, 1521
MboI GATC 4 cut(s) 25, 99, 184, 1519
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 196, 388
MluCI AATT 6 cut(s) 316, 555, 606, 618, 774, 1350
MlyI GAGTC 3 cut(s) 1145, 1399, 1493
MnlI CCTC 5 cut(s) 237, 800, 1446, 1456, 1577
MroI TCCGGA 1 cut(s) 1522
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 7 cut(s) 69, 432, 491, 612, 863, 984, 1200
MslI CAYNNNNRTG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 2 cut(s) 97, 1523
MspR9I CCNGG 2 cut(s) 63, 1473
MunI CAATTG 1 cut(s) 618
Mva1269I GAATGC 2 cut(s) 123, 530
MvaI CCWGG 2 cut(s) 63, 1473
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 200, 338, 347, 1038
NdeI CATATG 1 cut(s) 507
NdeII GATC 4 cut(s) 25, 99, 184, 1519
NlaIII CATG 5 cut(s) 158, 786, 1055, 1070, 1390
NlaIV GGNNCC 1 cut(s) 1049
NmuCI GTSAC 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 446
PctI GAATGC 2 cut(s) 123, 530
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 3 cut(s) 310, 989, 1079
PflMI CCANNNNNTGG 1 cut(s) 1057
PfoI TCCNGGA 1 cut(s) 1471
PkrI GCNGC 1 cut(s) 759
PleI GAGTC 3 cut(s) 1145, 1398, 1493
PpsI GAGTC 3 cut(s) 1145, 1398, 1493
PshAI GACNNNNGTC 2 cut(s) 15, 1389
PshBI ATTAAT 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 61, 1471
PspGI CCWGG 2 cut(s) 61, 1471
PspN4I GGNNCC 1 cut(s) 1049
PspPI GGNCC 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 446
PstNI CAGNNNCTG 2 cut(s) 133, 229
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 3 cut(s) 663, 1049, 1454
RsaNI GTAC 3 cut(s) 662, 1048, 1453
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 7 cut(s) 69, 432, 491, 612, 863, 984, 1200
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 4 cut(s) 25, 99, 184, 1519
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 3 cut(s) 1145, 1399, 1493
ScrFI CCNGG 2 cut(s) 63, 1473
SduI GDGCHC 2 cut(s) 196, 388
SexAI ACCWGGT 1 cut(s) 61
SfaNI GCATC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 5 cut(s) 431, 446, 791, 1112, 1169
SmoI CTYRAG 5 cut(s) 431, 446, 791, 1112, 1169
Sse9I AATT 6 cut(s) 316, 555, 606, 618, 774, 1350
SsiI CCGC 2 cut(s) 577, 747
SspMI CTAG 2 cut(s) 1038, 1076
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 61, 1471
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 3 cut(s) 174, 496, 1301
TaqI TCGA 3 cut(s) 447, 627, 1393
TaqII GACCGA 1 cut(s) 660
TasI AATT 6 cut(s) 316, 555, 606, 618, 774, 1350
TatI WGTACW 1 cut(s) 661
TfiI GAWTC 3 cut(s) 310, 989, 1079
Tru1I TTAA 7 cut(s) 69, 432, 491, 612, 863, 984, 1200
Tru9I TTAA 7 cut(s) 69, 432, 491, 612, 863, 984, 1200
TscAI CASTG 4 cut(s) 35, 566, 810, 1546
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 1 cut(s) 496
TspGWI ACGGA 3 cut(s) 9, 566, 1523
TspRI CASTG 4 cut(s) 35, 566, 810, 1546
Van91I CCANNNNNTGG 1 cut(s) 1057
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 2 cut(s) 555, 606
XhoI CTCGAG 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 2 cut(s) 1038, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.