Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

2703566 .. 2705181

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026388

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTGACCATCTCACAAACATTCAGGCAGCCTACTCTCCTATCTTTTGTTGTTTTGAGGTGGTATACTACTCGATCAAGACGATCCTATGTTTTATTCTTTGGGACTGATATTGAAGTGAACTGTTACCTTAAGAGAGATCACGATGGATTAAAGGCACAGTTTTACTGGGAAAGAGCAGAACTTGAAGCCAAGTATCAGAAATTTTATAATAAAATTTACAATGAGCGATGTGGGATTGTAAATGGTGTTGTTGAAGCTGAAAAAGTGATTAATGACTCTGAAGCAGTAAATCAAGAGGTTGCCCCGGAAGAGAAAGGTGTGCCTAACTTCTGGTACCATGCTTTGGTAAACCATGAGTTGATAGATGCGGAGATTAGTCTTCATGACGAAGAAGCTCTCAAGTATCTTGCAGACATCAAGTGGTGGAGAAAAGATGACTCTAAGGGTTTCATACTTGAGTTTTGCTTTAACAACAATCCTTTCTTTAAAAACTCTGTTTTGACCAAGACACATCAGTTTCTTGGCGTATGTTATTCAATTTTCTTTCTTTTTCAGGAGATGGAACTCATAGAAGATATGAGACGAGATTATTACATTGGGTCAACCATTCGCAATCATATCATCCCTCGTGCTGTTTTATGGTATTTAGGGGAGGCTGTCCCAGGAGATAAGGTGGTTGGTGTTACAGACTCGGAAGAAAGTGATGAATATATGGATGAAATCAGTGAAGTTGAAGATGAAGATGACGAGAGTGAAAATGAAGACAATGAAAAGGAAGATGATAATGGCAATGATGAGAGTGAAACGCCCATCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

275

Amino Acids

32.31

Weight (kDa)

4.49

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	43 - 174	3.6e-36	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	203, 216
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	346
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	5 cut(s)	116, 188, 257, 540, 737
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	2 cut(s)	260, 398
AluI	AGCT	2 cut(s)	260, 398
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	203, 216
AseI	ATTAAT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	374, 771
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	17, 140, 556, 821
BciT130I	CCWGG	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	577
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	308, 666
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	308, 666
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	374, 771
BpuEI	CTTGAG	2 cut(s)	386, 479
BpuMI	CCSGG	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	306, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	306, 664
BseGI	GGATG	2 cut(s)	624, 724
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	799
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	118, 647
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	118, 647
Bsp143I	GATC	3 cut(s)	74, 83, 139
BspACI	CCGC	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	306, 664
BssMI	GATC	3 cut(s)	74, 83, 139
BssNAI	GTATAC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	630
Bst1107I	GTATAC	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	125, 162
Bst6I	CTCTTC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	624, 724
BstKTI	GATC	3 cut(s)	77, 86, 142
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	3 cut(s)	74, 83, 139
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	2 cut(s)	306, 664
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	374, 771
BstZ17I	GTATAC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	624, 724
BtsIMutI	CAGTG	1 cut(s)	733
CciI	TCATGA	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	341, 356, 386
CviJI	RGCY	5 cut(s)	31, 191, 260, 398, 659
CviKI_1	RGCY	5 cut(s)	31, 191, 260, 398, 659
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	76, 85, 141
DpnII	GATC	3 cut(s)	74, 83, 139
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	3 cut(s)	344, 359, 389
FaqI	GGGAC	2 cut(s)	118, 647
FatI	CATG	3 cut(s)	340, 355, 385
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	611, 731
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	344, 359, 389
HincII	GTYRAC	2 cut(s)	6, 606
HindII	GTYRAC	2 cut(s)	6, 606
HinfI	GANTC	3 cut(s)	278, 440, 692
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	5 cut(s)	6, 66, 121, 352, 606
Hpy188I	TCNGA	3 cut(s)	201, 283, 697
Hpy188III	TCNNGA	5 cut(s)	78, 143, 296, 386, 557
Hpy8I	GTNNAC	5 cut(s)	6, 66, 121, 352, 606
HpyCH4III	ACNGT	2 cut(s)	125, 162
HpyCH4V	TGCA	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	344, 359, 389
KpnI	GGTACC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	74, 83, 139
LpnPI	CCDG	7 cut(s)	10, 154, 319, 321, 542, 651, 678
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	125, 685
MalI	GATC	3 cut(s)	76, 85, 141
MboI	GATC	3 cut(s)	74, 83, 139
MboII	GAAGA	9 cut(s)	323, 374, 404, 587, 710, 749, 755, 776, 791
MluCI	AATT	3 cut(s)	203, 216, 540
MlyI	GAGTC	3 cut(s)	272, 434, 686
MnlI	CCTC	4 cut(s)	51, 292, 639, 649
MseI	TTAA	5 cut(s)	132, 152, 273, 471, 489
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	308, 666
MvaI	CCWGG	1 cut(s)	666
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	74, 83, 139
NlaIII	CATG	3 cut(s)	344, 359, 389
NlaIV	GGNNCC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	3 cut(s)	272, 434, 686
PpsI	GAGTC	3 cut(s)	272, 434, 686
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	5 cut(s)	132, 152, 273, 471, 489
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	74, 83, 139
SchI	GAGTC	3 cut(s)	272, 434, 686
ScrFI	CCNGG	2 cut(s)	308, 666
SetI	ASST	7 cut(s)	62, 132, 262, 303, 322, 400, 678
SfaNI	GCATC	1 cut(s)	358
SmlI	CTYRAG	3 cut(s)	131, 401, 458
SmoI	CTYRAG	3 cut(s)	131, 401, 458
Sse9I	AATT	3 cut(s)	203, 216, 540
SsiI	CCGC	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	306, 664
TaaI	ACNGT	2 cut(s)	125, 162
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	203, 216, 540
Tru1I	TTAA	5 cut(s)	132, 152, 273, 471, 489
Tru9I	TTAA	5 cut(s)	132, 152, 273, 471, 489
TscAI	CASTG	1 cut(s)	733
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	7 cut(s)	374, 442, 723, 735, 756, 777, 786
TspRI	CASTG	1 cut(s)	733
Van91I	CCANNNNNTGG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	203, 216
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.