Rroxscaffold_3G00249040

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001465
Physical Location & Seq
Forward (+)
42600679 .. 42601317
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249040.1

Sequence Viewer

Length: 360 bp
ATGGTTGGGATTACTTCACTATATATTGGCTCAGAGTTGGCGCTTTGCAGGATAGAGATTGAATGGTATCCTGGAAACTGCTTGACGAGAGAATATGAAAGTTTCTTCAACTTTTTCAATCCCCTTCAAATTGATGAAAAAGCTCACAAACTCATAGAAGAGATGAGACGAGATTATTACATTGGGTCAACCATTCGCAATGAGATTATCCCTCGTGCTGTTTTATGGTATCTAGGGGAGGCGGTACAGGGAGATAAGGAGGTTGGTTTTAAAGAATCCGAAGGAAGTGATGAAGATGTAGATGAAGTCAGTGAAGATGAAGAGAGTGAAGACGAAGACAATGAAGAGGAAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

119

Amino Acids

13.9

Weight (kDa)

4.05

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 31 - 80 8.8e-13 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 242
AfaI GTAC 1 cut(s) 246
AgsI TTSAA 4 cut(s) 62, 109, 118, 128
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 43
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 2 cut(s) 336, 342
BciT130I CCWGG 1 cut(s) 72
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 44
BfuI GTATCC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 336, 342
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 205
BssMI GATC 1 cut(s) 352
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 72
Bst6I CTCTTC 3 cut(s) 153, 315, 339
BstDEI CTNAG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 336, 342
BsuI GTATCC 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 316
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 245
CviJI RGCY 2 cut(s) 30, 143
CviKI_1 RGCY 2 cut(s) 30, 143
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 153, 315, 339
EarI CTCTTC 3 cut(s) 153, 315, 339
EcoRII CCWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 160
FaiI YATR 5 cut(s) 22, 24, 96, 155, 226
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 44
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 34, 280
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 2 cut(s) 134, 275
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 31
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 4 cut(s) 34, 57, 84, 233
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 8 cut(s) 97, 170, 305, 326, 332, 341, 347, 356
MluCI AATT 1 cut(s) 129
MnlI CCTC 4 cut(s) 222, 232, 253, 340
MseI TTAA 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NdeII GATC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 72
SetI ASST 2 cut(s) 145, 264
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 70
TasI AATT 1 cut(s) 129
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 6 cut(s) 111, 150, 306, 318, 333, 357
TspRI CASTG 1 cut(s) 316
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.