Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

40403833 .. 40406603

Gene Structure 2771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTATCCTGATAATCTGAATATATTGGTCTGGCCCAGATTGGAGCTACTTTCCCTCTCAACTGATTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACATCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCTTGTCGTGTGTTCGTTGCAGCAAACCCGCCAACCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTGGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTTGCATAAATCGGTACATTTAAAGATTACGGATCAAGATGAAGGAGCTCTCAAGCATCTTATAGACATTAAATGGTCCAGGATACAGAAAGGGTTCAAACTTGAATTCTATTTTCACACTAACCCTTTCTTTGAAAACCTTGTCTTGACCAAGACGTATCATATGAATGATGAAGATGAATTCTTTCTAGAATCTGCAATAGGGACAGAGATTGAATGGCATCCAAAAAAATGCTTGACACAGAAGCTCGATAAGATATCTGGGAAGGGATCAAAGAAAGCTAAGCCAATGACTAATAAAAGCTTCTTTGGCTTTTTCAGTCCACTTGAAATCCCAAAGAACCTGAAAGATATGAAAGATACTGTTGAGGTCGTAAATCTGAAAGACGAGATGGAAAGGGATTGTTTCTTTGGATTTAGAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

234

Amino Acids

26.82

Weight (kDa)

7.54

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	56 - 99	1.6e-14	zf-MYND-like zinc finger, mRNA-binding
NAP	PF00956	95 - 214	2e-30	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AciI	CCGC	2 cut(s)	183, 237
AclWI	GGATC	2 cut(s)	315, 553
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	380, 455
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	6 cut(s)	217, 373, 380, 410, 491, 605
AjnI	CCWGG	2 cut(s)	223, 353
AluBI	AGCT	7 cut(s)	46, 220, 276, 323, 523, 557, 579
AluI	AGCT	7 cut(s)	46, 220, 276, 323, 523, 557, 579
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	315, 553
AoxI	GGCC	2 cut(s)	32, 141
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	380, 455
Asp700I	GAANNNNTTC	2 cut(s)	368, 459
AspS9I	GGNCC	2 cut(s)	33, 351
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	661
BciT130I	CCWGG	2 cut(s)	225, 355
BciVI	GTATCC	2 cut(s)	15, 351
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	87, 464
BfuI	GTATCC	2 cut(s)	15, 351
BisI	GCNGC	2 cut(s)	175, 237
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	176, 238
Bme1390I	CCNGG	2 cut(s)	225, 355
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	33, 351
BmrFI	CCNGG	2 cut(s)	225, 355
BmsI	GCATC	3 cut(s)	223, 340, 505
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	225, 355
BseGI	GGATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	110, 263
BseRI	GAGGAG	2 cut(s)	85, 88
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	34, 143
BsiHKAI	GWGCWC	1 cut(s)	325
BslFI	GGGAC	2 cut(s)	183, 493
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	183, 493
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	34, 143
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	135, 307, 545
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	2 cut(s)	183, 237
BspANI	GGCC	2 cut(s)	34, 143
BspCNI	CTCAG	2 cut(s)	111, 262
BspPI	GGATC	2 cut(s)	315, 553
BssMI	GATC	3 cut(s)	135, 307, 545
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	225, 355
Bst4CI	ACNGT	2 cut(s)	640, 700
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	119, 249, 558
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	3 cut(s)	138, 310, 548
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	135, 307, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 585
BstNI	CCWGG	2 cut(s)	225, 355
BstSCI	CCNGG	2 cut(s)	223, 353
BstV1I	GCAGC	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	119
BsuI	GTATCC	2 cut(s)	15, 351
BsuRI	GGCC	2 cut(s)	34, 143
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	33, 351
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	3 cut(s)	119, 249, 558
DpnI	GATC	3 cut(s)	137, 309, 547
DpnII	GATC	3 cut(s)	135, 307, 545
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	323
EcoRI	GAATTC	2 cut(s)	380, 455
EcoRII	CCWGG	2 cut(s)	223, 353
EcoRV	GATATC	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	1 cut(s)	142
FaiI	YATR	7 cut(s)	23, 140, 282, 338, 438, 440, 629
FaqI	GGGAC	2 cut(s)	183, 493
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	175, 237
FokI	GGATG	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	175, 237
FspBI	CTAG	2 cut(s)	87, 464
GluI	GCNGC	2 cut(s)	175, 237
HaeIII	GGCC	2 cut(s)	34, 143
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	218, 577
HinfI	GANTC	1 cut(s)	467
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	2 cut(s)	18, 657
Hpy188III	TCNNGA	5 cut(s)	8, 251, 311, 421, 464
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	3 cut(s)	200, 311, 535
HpyCH4III	ACNGT	2 cut(s)	640, 700
HpyCH4IV	ACGT	2 cut(s)	147, 431
HpyCH4V	TGCA	4 cut(s)	174, 246, 280, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 585
HpyF3I	CTNAG	3 cut(s)	119, 249, 558
HpySE526I	ACGT	2 cut(s)	147, 431
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	135, 307, 545
LmnI	GCTCC	3 cut(s)	43, 273, 320
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	3 cut(s)	223, 340, 505
MaeI	CTAG	2 cut(s)	87, 464
MaeII	ACGT	2 cut(s)	147, 431
MalI	GATC	3 cut(s)	137, 309, 547
MboI	GATC	3 cut(s)	135, 307, 545
MboII	GAAGA	2 cut(s)	242, 461
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	212, 380, 455
MnlI	CCTC	7 cut(s)	65, 81, 103, 106, 109, 114, 637
MroXI	GAANNNNTTC	2 cut(s)	368, 459
MseI	TTAA	3 cut(s)	261, 296, 345
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	225, 355
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	225, 355
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 585
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	3 cut(s)	135, 307, 545
NlaIII	CATG	1 cut(s)	142
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	368, 459
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	176, 238
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	223, 353
PspGI	CCWGG	2 cut(s)	223, 353
PspPI	GGNCC	2 cut(s)	33, 351
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	261, 296, 345
SatI	GCNGC	2 cut(s)	175, 237
Sau3AI	GATC	3 cut(s)	135, 307, 545
Sau96I	GGNCC	2 cut(s)	33, 351
ScrFI	CCNGG	2 cut(s)	225, 355
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	3 cut(s)	223, 340, 505
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	212, 380, 455
SsiI	CCGC	2 cut(s)	183, 237
SspMI	CTAG	2 cut(s)	87, 464
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	223, 353
TaaI	ACNGT	2 cut(s)	640, 700
TaiI	ACGT	2 cut(s)	150, 434
TaqI	TCGA	1 cut(s)	525
TasI	AATT	3 cut(s)	212, 380, 455
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	261, 296, 345
Tru9I	TTAA	3 cut(s)	261, 296, 345
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	5 cut(s)	330, 455, 462, 468, 644
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	2 cut(s)	380, 455
XbaI	TCTAGA	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	368, 459
XspI	CTAG	2 cut(s)	87, 464
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.