Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

7210225 .. 7214885

Gene Structure 4661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGCAACGACATGAACGTGTCCGATCTCGGCTCTTGCGTTGGGAGCGGAGATGATCGACCAGCCCTTACTCCAACCAAGCTCCACAGGTTCCCACCGGATACCCGAAAGCGCATTGAGCATCTTATACAGATACAGAAAGACCATGATGGATTAAAGGCACAGTTTTTCAACGATCGAGGAGAACTTGAAGCTCAATATGAGAAACTCTATCTGCCTCTGTACGACAAGATTAAAGACTATGATGAAGGAGCTCTCAAACATCTTGAAAACATCAAGTGGCTTAGGACAGATAACCTTAAGGTTTTCAAACTAGAGTTCTACTTTCGTCCCAACCCCTTCTTCAAAAACTCTGTGTTGACAGTGACGTATCATATGATTGATGAAGATGAATCCATTTTAGAGAAAATAATAGGGTCAAGTATTCGGGATGATATAATCCCTCGTGCTGTTTTATGGTTTACGGGGGAGGCTAAGCTAGAACAGTTTGAAGAGATTGCATCAAGGCATGAATATTTCCTTAATAGCCTATCACTGGATGTCCAAAAGCGAGTTGACATTCTTAGAAAAATTCAGAAAGATCATGATGGATTAAAGGCACAGTTTTACCGGGAAAGAGCAGAACTTGAAGCCAACTATCAGAAAGCGTATAATAACATGTACAATGAGCGATATGGGATTGTAAATGGTGTTGTTGAAGCTGAAAAATTGGCCAAGGACTCTCAAGTAGTAAATCAAGAGGTTGATGCCCCCAGAGAGTTGGCGCTTTGCAGGATAGAGATTGAATGGTATCCCGGAAACTGCTTGACGAGAGAATATGAAAGTTTCTTCAACTTTTTCAATCCCCTTCAAATTGATGAAAAAGCTCACGAACTCATAGAAGAGATGAGACGAGATTATTACATTGGGTCAACCATTCGCAATGAGATTATCCCTCGTGCTGTTTTATGGTATCTAGGGGAGGCGGTACAGGGAGATAAGGAGATATTAGAAGAGGAAATGGGTATGGGGAAGGTTACAGACAAAACGATGAATTACAGATCGTCAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

351

Amino Acids

41.29

Weight (kDa)

5.15

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	77 - 130	9e-15	Nucleosome assembly protein (NAP)
NAP	PF00956	183 - 237	1.4e-10	Nucleosome assembly protein (NAP)
NAP	PF00956	272 - 321	3.4e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	48
AciI	CCGC	2 cut(s)	48, 965
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	570
AfaI	GTAC	3 cut(s)	224, 662, 969
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	2 cut(s)	18, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	6 cut(s)	82, 194, 254, 478, 701, 866
AluI	AGCT	6 cut(s)	82, 194, 254, 478, 701, 866
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	883
AoxI	GGCC	1 cut(s)	711
ApoI	RAATTY	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	114, 766
AsuC2I	CCSGG	2 cut(s)	611, 795
BalI	TGGCCA	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	2 cut(s)	444, 936
Bbv12I	GWGCWC	1 cut(s)	256
BccI	CCATC	2 cut(s)	143, 581
BciVI	GTATCC	2 cut(s)	94, 801
BcnI	CCSGG	2 cut(s)	611, 795
BcoDI	GTCTC	1 cut(s)	883
BfaI	CTAG	3 cut(s)	314, 479, 956
BfoI	RGCGCY	1 cut(s)	767
BfrI	CTTAAG	1 cut(s)	299
BfuI	GTATCC	2 cut(s)	94, 801
BlpI	GCTNAGC	1 cut(s)	474
Bme1390I	CCNGG	2 cut(s)	611, 795
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	611, 795
BmsI	GCATC	3 cut(s)	130, 509, 736
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	2 cut(s)	611, 795
BsaJI	CCNNGG	1 cut(s)	714
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	928
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	2 cut(s)	436, 544
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	928
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	713
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	98, 610, 795
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	883
BsmBI	CGTCTC	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	5 cut(s)	25, 55, 175, 580, 1040
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	2 cut(s)	48, 965
BspANI	GGCC	1 cut(s)	713
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	928
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	5 cut(s)	25, 55, 175, 580, 1040
BssSI	CACGAG	2 cut(s)	444, 936
BssT1I	CCWWGG	1 cut(s)	714
Bst2BI	CACGAG	2 cut(s)	444, 936
Bst4CI	ACNGT	4 cut(s)	165, 364, 486, 603
Bst6I	CTCTTC	3 cut(s)	486, 876, 987
BstAFI	CTTAAG	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	660
BstDEI	CTNAG	3 cut(s)	284, 474, 563
BstF5I	GGATG	2 cut(s)	436, 544
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	114, 766
BstKTI	GATC	5 cut(s)	28, 58, 178, 583, 1043
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	5 cut(s)	25, 55, 175, 580, 1040
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 118
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	609, 793
BstXI	CCANNNNNNTGG	1 cut(s)	760
BsuI	GTATCC	2 cut(s)	94, 801
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	436, 544
BtsIMutI	CAGTG	2 cut(s)	369, 533
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	2 cut(s)	114, 766
Csp6I	GTAC	3 cut(s)	223, 661, 968
CviAII	CATG	5 cut(s)	13, 146, 509, 584, 658
CviQI	GTAC	3 cut(s)	223, 661, 968
DdeI	CTNAG	3 cut(s)	284, 474, 563
DpnI	GATC	5 cut(s)	27, 57, 177, 582, 1042
DpnII	GATC	5 cut(s)	25, 55, 175, 580, 1040
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	3 cut(s)	486, 876, 987
EarI	CTCTTC	3 cut(s)	486, 876, 987
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	5 cut(s)	16, 149, 512, 587, 661
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	12, 145, 508, 583, 657
FauNDI	CATATG	1 cut(s)	375
FokI	GGATG	2 cut(s)	443, 551
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	3 cut(s)	314, 479, 956
GlaI	GCGC	2 cut(s)	113, 765
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	3 cut(s)	98, 610, 795
HhaI	GCGC	2 cut(s)	114, 766
Hin1II	CATG	5 cut(s)	16, 149, 512, 587, 661
Hin6I	GCGC	2 cut(s)	112, 764
HinP1I	GCGC	2 cut(s)	112, 764
HincII	GTYRAC	3 cut(s)	360, 556, 912
HindII	GTYRAC	3 cut(s)	360, 556, 912
HinfI	GANTC	2 cut(s)	392, 719
HpaII	CCGG	3 cut(s)	98, 610, 795
Hpy166II	GTNNAC	4 cut(s)	360, 462, 556, 912
Hpy188I	TCNGA	3 cut(s)	25, 576, 642
Hpy188III	TCNNGA	5 cut(s)	266, 428, 584, 737, 869
Hpy8I	GTNNAC	4 cut(s)	360, 462, 556, 912
HpyAV	CCTTC	4 cut(s)	242, 349, 857, 1006
HpyCH4III	ACNGT	4 cut(s)	165, 364, 486, 603
HpyCH4IV	ACGT	2 cut(s)	18, 368
HpyCH4V	TGCA	2 cut(s)	500, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 118
HpyF3I	CTNAG	3 cut(s)	284, 474, 563
HpySE526I	ACGT	2 cut(s)	18, 368
Hsp92II	CATG	5 cut(s)	16, 149, 512, 587, 661
HspAI	GCGC	2 cut(s)	112, 764
Kzo9I	GATC	5 cut(s)	25, 55, 175, 580, 1040
LmnI	GCTCC	3 cut(s)	45, 87, 251
LpnPI	CCDG	9 cut(s)	73, 75, 111, 521, 623, 757, 766, 808, 956
LweI	GCATC	3 cut(s)	130, 509, 736
MaeI	CTAG	3 cut(s)	314, 479, 956
MaeII	ACGT	2 cut(s)	18, 368
MaeIII	GTNAC	2 cut(s)	364, 1015
MalI	GATC	5 cut(s)	27, 57, 177, 582, 1042
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	5 cut(s)	25, 55, 175, 580, 1040
MboII	GAAGA	6 cut(s)	334, 398, 503, 820, 893, 1004
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	4 cut(s)	570, 707, 852, 1033
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	8 cut(s)	173, 228, 453, 463, 733, 945, 955, 988
Mox20I	TGGCCA	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	6 cut(s)	155, 234, 300, 522, 593, 1054
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	713
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	3 cut(s)	98, 610, 795
MspR9I	CCNGG	2 cut(s)	611, 795
MwoI	GCNNNNNNNGC	2 cut(s)	45, 118
NciI	CCSGG	2 cut(s)	611, 795
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	5 cut(s)	25, 55, 175, 580, 1040
NlaIII	CATG	5 cut(s)	16, 149, 512, 587, 661
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	1 cut(s)	583
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 36
PfeI	GAWTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	793
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	224, 662, 969
RsaNI	GTAC	3 cut(s)	223, 661, 968
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	6 cut(s)	155, 234, 300, 522, 593, 1054
Sau3AI	GATC	5 cut(s)	25, 55, 175, 580, 1040
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	611, 795
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	3 cut(s)	130, 509, 736
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	299, 723
SmoI	CTYRAG	2 cut(s)	299, 723
Sse9I	AATT	4 cut(s)	570, 707, 852, 1033
SsiI	CCGC	2 cut(s)	48, 965
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	3 cut(s)	314, 479, 956
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	609, 793
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	4 cut(s)	165, 364, 486, 603
TaiI	ACGT	2 cut(s)	21, 371
TaqI	TCGA	2 cut(s)	58, 178
TasI	AATT	4 cut(s)	570, 707, 852, 1033
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	6 cut(s)	155, 234, 300, 522, 593, 1054
Tru9I	TTAA	6 cut(s)	155, 234, 300, 522, 593, 1054
TscAI	CASTG	2 cut(s)	369, 540
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	8 cut(s)	29, 261, 399, 405, 525, 834, 873, 1046
TspRI	CASTG	2 cut(s)	369, 540
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	3 cut(s)	314, 479, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.