Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

2707527 .. 2709243

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTTACGGGGAGGCTTCGCTAGAGCAGATGATAGAGATCACAACAAGGCATTCATGTTTCCTCAATAACCTATCATTGGATGTCCAAAAGCATGTTGACCATCTCAGAAACATTCAGAGAGATCATGATGGATTAAAGGCACAGTTTTACCGGGAAAGAGCAGAACTTGAAGCCAAGTATCAGAAATTTTATAATAAAATTTACAATGAGCGATGTGGGATTGTAAATGGTGCTGTTGAAGCTGAAAAAGTGATTAATGACTCTGAAGCAGTAAATCAAGAGGTTGCCCCGGAAGGGAAAGGTGTGCCTAACTTCTGGTACCATACTTTGGTAAACCATGAGTTGCTAGCTGCGGAGATTAGTCTTCATGACGAAGAAGCTCTCAAGTATCTTACAGACATCAAATGGTGGAGAAAAGATGACTCTAAGGGGTTCATACTTGAGTTTTGCTTTAACAACAATTCTTTCTTTAAAAACTCTGTTTTGACCAAGACATATCAGTTTCTTGATGAAGATGAAACCATTCTATACAAAGCAATAGGGACAGAGATCGAATGGTATCCGGAATACTGTTTGACTAAAGAACGTGATAGTTTCTTCAACTTTTTCTATCCCCTTCAAATTGATGAAGATGCTGAGATGGAACTCATAGAAGATATGAGACGAGATTATTACATTGGGTCAACCATTCGCAATCATATCATCCCTCGTGCTGTTTTATGGTATTTAGGGGAGGCTGTCCCAGGAGATAAGGTGGTTGGTGTTACAAACTCGGAAGAAAGTGATGAATATATGGATGAAATCAGTGAAGTTGAAGATGAAGATGACGAGAGCGAAAATGAAGACAATGAAAAGGAAGATGATAATGGCAATGATGAGAGTGAAACGCCCATCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

301

Amino Acids

35.38

Weight (kDa)

4.38

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	32 - 196	3.6e-45	Nucleosome assembly protein (NAP)
NAP	PF00956	195 - 246	2e-12	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	188, 201
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	79, 297, 331
AgsI	TTSAA	5 cut(s)	173, 242, 604, 623, 818
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	3 cut(s)	245, 353, 383
AluI	AGCT	3 cut(s)	245, 353, 383
Alw26I	GTCTC	1 cut(s)	658
Aor13HI	TCCGGA	1 cut(s)	565
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	188, 201
AseI	ATTAAT	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	321
AsuC2I	CCSGG	2 cut(s)	155, 293
AsuNHI	GCTAGC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	711
BbsI	GAAGAC	2 cut(s)	359, 852
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	4 cut(s)	111, 125, 637, 902
BciT130I	CCWGG	1 cut(s)	747
BciVI	GTATCC	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	155, 293
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	2 cut(s)	23, 350
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	155, 293, 747
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	3 cut(s)	155, 293, 747
BmsI	GCATC	1 cut(s)	625
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	2 cut(s)	359, 852
BpuEI	CTTGAG	2 cut(s)	371, 464
BpuMI	CCSGG	2 cut(s)	155, 293
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	291, 745
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 297, 331
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	291, 745
BseGI	GGATG	3 cut(s)	88, 705, 805
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	79, 297, 331
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	2 cut(s)	121, 630
BseXI	GCAGC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	154, 293, 566
BslFI	GGGAC	2 cut(s)	559, 728
BslI	CCNNNNNNNGG	3 cut(s)	79, 297, 331
BsmAI	GTCTC	1 cut(s)	658
BsmBI	CGTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	559, 728
BsmI	GAATGC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	39, 124, 552
BspACI	CCGC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	120, 631
BspEI	TCCGGA	1 cut(s)	565
BspHI	TCATGA	2 cut(s)	127, 370
BspLI	GGNNCC	1 cut(s)	323
BspOI	GCTAGC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	291, 745
BssMI	GATC	3 cut(s)	39, 124, 552
BssSI	CACGAG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	147, 575
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	107, 429, 639
BstF5I	GGATG	3 cut(s)	88, 705, 805
BstKTI	GATC	3 cut(s)	42, 127, 555
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	3 cut(s)	39, 124, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	153, 291, 745
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	2 cut(s)	359, 852
BsuI	GTATCC	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	88, 705, 805
BtsIMutI	CAGTG	1 cut(s)	814
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	2 cut(s)	127, 370
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	5 cut(s)	57, 95, 128, 341, 371
CviJI	RGCY	6 cut(s)	17, 176, 245, 353, 383, 740
CviKI_1	RGCY	6 cut(s)	17, 176, 245, 353, 383, 740
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	107, 429, 639
DpnI	GATC	3 cut(s)	41, 126, 554
DpnII	GATC	3 cut(s)	39, 124, 552
DraI	TTTAAA	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	745
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	5 cut(s)	60, 98, 131, 344, 374
FaqI	GGGAC	2 cut(s)	559, 728
FatI	CATG	5 cut(s)	56, 94, 127, 340, 370
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	95, 692, 812
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	23, 350
GluI	GCNGC	1 cut(s)	354
HapII	CCGG	3 cut(s)	154, 293, 566
Hin1II	CATG	5 cut(s)	60, 98, 131, 344, 374
HincII	GTYRAC	2 cut(s)	100, 687
HindII	GTYRAC	2 cut(s)	100, 687
HinfI	GANTC	2 cut(s)	263, 425
HpaII	CCGG	3 cut(s)	154, 293, 566
Hpy166II	GTNNAC	4 cut(s)	7, 100, 337, 687
Hpy188I	TCNGA	5 cut(s)	110, 120, 186, 268, 778
Hpy188III	TCNNGA	5 cut(s)	128, 281, 371, 509, 566
Hpy8I	GTNNAC	4 cut(s)	7, 100, 337, 687
HpyAV	CCTTC	2 cut(s)	290, 629
HpyCH4III	ACNGT	2 cut(s)	147, 575
HpyCH4IV	ACGT	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	107, 429, 639
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	5 cut(s)	60, 98, 131, 344, 374
Kpn2I	TCCGGA	1 cut(s)	565
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	39, 124, 552
LpnPI	CCDG	6 cut(s)	167, 304, 306, 579, 732, 759
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	23, 350
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	3 cut(s)	41, 126, 554
MboI	GATC	3 cut(s)	39, 124, 552
MluCI	AATT	4 cut(s)	188, 201, 463, 624
MlyI	GAGTC	2 cut(s)	257, 419
MnlI	CCTC	5 cut(s)	7, 74, 277, 720, 730
MroI	TCCGGA	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	4 cut(s)	137, 258, 456, 474
MspI	CCGG	3 cut(s)	154, 293, 566
MspR9I	CCNGG	3 cut(s)	155, 293, 747
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	2 cut(s)	155, 293
NdeII	GATC	3 cut(s)	39, 124, 552
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	5 cut(s)	60, 98, 131, 344, 374
NlaIV	GGNNCC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	98
PagI	TCATGA	2 cut(s)	127, 370
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	257, 419
PpsI	GAGTC	2 cut(s)	257, 419
PshBI	ATTAAT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	323
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	137, 258, 456, 474
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	39, 124, 552
SchI	GAGTC	2 cut(s)	257, 419
ScrFI	CCNGG	3 cut(s)	155, 293, 747
SetI	ASST	8 cut(s)	75, 247, 288, 307, 355, 385, 592, 759
SfaNI	GCATC	1 cut(s)	625
SmlI	CTYRAG	2 cut(s)	386, 443
SmoI	CTYRAG	2 cut(s)	386, 443
Sse9I	AATT	4 cut(s)	188, 201, 463, 624
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	23, 350
StyD4I	CCNGG	3 cut(s)	153, 291, 745
TaaI	ACNGT	2 cut(s)	147, 575
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	188, 201, 463, 624
Tru1I	TTAA	4 cut(s)	137, 258, 456, 474
Tru9I	TTAA	4 cut(s)	137, 258, 456, 474
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	1 cut(s)	353
TspRI	CASTG	1 cut(s)	814
Van91I	CCANNNNNTGG	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	188, 201
XceI	RCATGY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	23, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.