Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

59833599 .. 59836949

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGAACAACGACATGAACGTGTCCGATCTCGGCTCTTGTGTTGGGAGCCGAGATGATGGACCAGCCCTTACTCCAACCAAACTCCACAGGTTCCCACCGGATACCCGAAAGCGCATTGAGCATCTTATACAGATACAGAAAGACCACGATGGATTAAAGGCACAGTTTTACAACGATCGAGGAGTACTTGAAGCTAAATATGAGAAACTCTATCAGCCTCTGTACGACAAGAGATGCGATATCGTGAACGGAATTGGAGTTACTACTGATTCTGAATCAGCAACAACAAATCAAGAGGAAAAAGGGATTCCTGATTTTTGGTACTATGCTTTGAAAGCCATTTATGTGATAAACATACGGATTAAAGAGTATGATCAAGGAGCTCTCAAACATCTTGAAAACATTAAGTGGCTTAGGACAGATAACCTTAAGGTTTTCATACTCAAGTTCTACTTTCGTCCCAACCCCTTCTTCAAAAACTCTGTTCTGAGCGTGACGTATCATATGATTGATGAAGATGAATCCATTATAGAGAAAATAATAGGGACTGAAATTGAGTGGACTTCCAAAAATCGCTTGAAGAAACGTAGAACTGGAAATCGTAGAAGCTTCTTCGATCTTTTTAGTCCACCTGAAGTCCATAATGACTGTAAAGACCTAGAACTCAAAGATATATTGCAAGGAAACTATTTAATTGGATCAATCATTCGGGATGATATAATCCCTCGTGCTGTTTTATGGTTTACGGGGGAGGCTAAGCTAGAACAGTTTGAAGAGATCGCATCAAGGCATGAATGTTTCCTTAATAGCCTATCACTGGATGTCCAAAAGCGAGTTGACCTTCTTAGAAAAATTCAGAAAGATCATGATGGATTAAAGGCACAGTTTTACGGAGAAAGAGCAGAACTTGAGGCCTACTATCAGAAAGCATATAACAACATGTACAATGAGCGATATGGGATTGTAAATGGTGTTGTTGAAGCTGAAAAATTGGCCAAGGACTCTGAAGTAGGAAATCAAGAGGTTGAAGCCCCCGAAGGGAAAGGTGTGCCTAACTTCTGGCGCGATGCTTTGGTAAACCATGAGTTGCTAGATACGGAGATTAGTATTCCTGATGGAGAAGCTCTCAAGTATCTTACAGACATCAAGTGGTTGAGGAAAGATGACTTTAAGGGGTTCATACTTCAGTTCTTCTTTGACAAAAACCCTTTCTTTAAAAACTCTGTTTTGACCAAGACATATCAGTTTCTTGATGAAGATGAAACCATTCTACACAAAGCAATAGGCGGGATAGAGATAGATTGGTATCCCGGTAACTGCTTGACGAGAGAATGTGAAAGTTTCTTCAACTTTTTCAATCCCATTCAAATTGATGAAAAGGCTCGTGAGGAACTCATAGAAGAGATGAGACGAGATTATTACATTGGGTCAACCATTCGCACTGAGATTATCCCTCGTGCTGTATTATGGTATTTAGGGGAGGCTGTCCAGGGAGACAAGGAGGTTGGTTTTAAAGAATCCGAAGAAAGTGATGAAGTCAGTGAAGATGAAGAGAGTGAAGACGAAGACGAAGACGATGAAGAGGAAGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

531

Amino Acids

62.06

Weight (kDa)

4.79

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	37 - 251	1.7e-53	Nucleosome assembly protein (NAP)
NAP	PF00956	277 - 494	1.1e-52	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1065
AciI	CCGC	1 cut(s)	1287
AclWI	GGATC	1 cut(s)	706
AcoI	YGGCCR	1 cut(s)	993
AcsI	RAATTY	1 cut(s)	852
AcuI	CTGAAG	3 cut(s)	654, 1026, 1169
AfaI	GTAC	4 cut(s)	186, 224, 323, 944
AfiI	CCNNNNNNNGG	2 cut(s)	817, 1038
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	2 cut(s)	18, 939
AjnI	CCWGG	1 cut(s)	1488
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	6 cut(s)	194, 383, 609, 760, 983, 1124
AluI	AGCT	6 cut(s)	194, 383, 609, 760, 983, 1124
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	1402, 1488
AlwI	GGATC	1 cut(s)	706
AlwNI	CAGNNNCTG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	912, 993
ApoI	RAATTY	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	1266
AspLEI	GCGC	2 cut(s)	114, 1065
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	1311
AvaII	GGWCC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	995
BanII	GRGCYC	1 cut(s)	385
BauI	CACGAG	3 cut(s)	726, 1383, 1455
BbsI	GAAGAC	3 cut(s)	1566, 1572, 1578
Bbv12I	GWGCWC	1 cut(s)	385
BccI	CCATC	4 cut(s)	50, 143, 863, 1109
BciT130I	CCWGG	1 cut(s)	1490
BciVI	GTATCC	2 cut(s)	94, 1317
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	1311
BcoDI	GTCTC	2 cut(s)	1402, 1488
BfaI	CTAG	3 cut(s)	659, 761, 1091
BfrI	CTTAAG	1 cut(s)	428
BfuI	GTATCC	2 cut(s)	94, 1317
BlpI	GCTNAGC	1 cut(s)	756
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	1311, 1490
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	47, 92
BmrFI	CCNGG	2 cut(s)	1311, 1490
BmsI	GCATC	4 cut(s)	130, 224, 791, 1057
BpiI	GAAGAC	3 cut(s)	1566, 1572, 1578
BplI	GAGNNNNNCTC	2 cut(s)	1110, 1142
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	756
BpuEI	CTTGAG	3 cut(s)	428, 929, 1112
BpuMI	CCSGG	1 cut(s)	1311
BsaBI	GATNNNNATC	1 cut(s)	1305
BsaJI	CCNNGG	2 cut(s)	996, 1489
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 1038
Bse1I	ACTGG	2 cut(s)	598, 822
Bse8I	GATNNNNATC	1 cut(s)	1305
BseBI	CCWGG	1 cut(s)	1490
BseDI	CCNNGG	2 cut(s)	996, 1489
BseGI	GGATG	2 cut(s)	718, 826
BseJI	GATNNNNATC	1 cut(s)	1305
BseLI	CCNNNNNNNGG	2 cut(s)	817, 1038
BseMII	CTCAG	2 cut(s)	479, 1434
BseNI	ACTGG	2 cut(s)	598, 822
BseRI	GAGGAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	914, 995
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	98, 1311
BslFI	GGGAC	2 cut(s)	444, 559
BslI	CCNNNNNNNGG	2 cut(s)	817, 1038
BsmAI	GTCTC	2 cut(s)	1402, 1488
BsmBI	CGTCTC	1 cut(s)	1402
BsmFI	GGGAC	2 cut(s)	444, 559
BsnI	GGCC	2 cut(s)	914, 995
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	1 cut(s)	1287
BspANI	GGCC	2 cut(s)	914, 995
BspCNI	CTCAG	2 cut(s)	480, 1435
BspFNI	CGCG	1 cut(s)	1065
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	47, 92
BspPI	GGATC	1 cut(s)	706
BspTI	CTTAAG	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	2 cut(s)	598, 822
BssECI	CCNNGG	2 cut(s)	996, 1489
BssMI	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
BssSI	CACGAG	3 cut(s)	726, 1383, 1455
BssT1I	CCWWGG	1 cut(s)	996
Bst2BI	CACGAG	3 cut(s)	726, 1383, 1455
Bst2UI	CCWGG	1 cut(s)	1490
Bst4CI	ACNGT	4 cut(s)	165, 650, 768, 885
Bst6I	CTCTTC	4 cut(s)	768, 1395, 1545, 1575
BstAFI	CTTAAG	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	942
BstDEI	CTNAG	5 cut(s)	413, 488, 756, 845, 1443
BstF5I	GGATG	2 cut(s)	718, 826
BstFNI	CGCG	1 cut(s)	1065
BstHHI	GCGC	2 cut(s)	114, 1065
BstKTI	GATC	7 cut(s)	28, 178, 376, 619, 701, 780, 865
BstMAI	GTCTC	2 cut(s)	1402, 1488
BstMBI	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 335
BstNI	CCWGG	1 cut(s)	1490
BstNSI	RCATGY	1 cut(s)	943
BstSCI	CCNGG	2 cut(s)	1309, 1488
BstUI	CGCG	1 cut(s)	1065
BstV2I	GAAGAC	3 cut(s)	1566, 1572, 1578
BsuI	GTATCC	2 cut(s)	94, 1317
BsuRI	GGCC	2 cut(s)	914, 995
BtgZI	GCGATG	1 cut(s)	1080
BtsCI	GGATG	2 cut(s)	718, 826
BtsIMutI	CAGTG	3 cut(s)	815, 1440, 1546
CaiI	CAGNNNCTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	2 cut(s)	114, 1065
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	4 cut(s)	185, 223, 322, 943
CviAII	CATG	5 cut(s)	13, 791, 866, 940, 1082
CviQI	GTAC	4 cut(s)	185, 223, 322, 943
DdeI	CTNAG	5 cut(s)	413, 488, 756, 845, 1443
DpnI	GATC	7 cut(s)	27, 177, 375, 618, 700, 779, 864
DpnII	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
DraI	TTTAAA	2 cut(s)	1216, 1513
EaeI	YGGCCR	1 cut(s)	993
Eam1104I	CTCTTC	4 cut(s)	768, 1395, 1545, 1575
EarI	CTCTTC	4 cut(s)	768, 1395, 1545, 1575
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	996
Eco147I	AGGCCT	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	3 cut(s)	654, 1026, 1169
EcoICRI	GAGCTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	1488
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	996
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	996
Esp3I	CGTCTC	1 cut(s)	1402
FaeI	CATG	5 cut(s)	16, 794, 869, 943, 1085
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	444, 559
FatI	CATG	5 cut(s)	12, 790, 865, 939, 1081
FauI	CCCGC	1 cut(s)	1280
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	2 cut(s)	725, 833
FriOI	GRGCYC	1 cut(s)	385
FspBI	CTAG	3 cut(s)	659, 761, 1091
GlaI	GCGC	2 cut(s)	113, 1064
HaeIII	GGCC	2 cut(s)	914, 995
HapII	CCGG	2 cut(s)	98, 1311
HhaI	GCGC	2 cut(s)	114, 1065
Hin1II	CATG	5 cut(s)	16, 794, 869, 943, 1085
Hin6I	GCGC	2 cut(s)	112, 1063
HinP1I	GCGC	2 cut(s)	112, 1063
HincII	GTYRAC	2 cut(s)	838, 1431
HindII	GTYRAC	2 cut(s)	838, 1431
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	6 cut(s)	269, 275, 307, 521, 1001, 1517
HpaII	CCGG	2 cut(s)	98, 1311
Hpy166II	GTNNAC	7 cut(s)	247, 561, 629, 744, 838, 1078, 1431
Hpy188I	TCNGA	7 cut(s)	25, 274, 489, 858, 924, 1006, 1522
Hpy8I	GTNNAC	7 cut(s)	247, 561, 629, 744, 838, 1078, 1431
HpyAV	CCTTC	4 cut(s)	478, 851, 1031, 1580
HpyCH4III	ACNGT	4 cut(s)	165, 650, 768, 885
HpyCH4IV	ACGT	3 cut(s)	18, 497, 586
HpyCH4V	TGCA	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 335
HpyF3I	CTNAG	5 cut(s)	413, 488, 756, 845, 1443
HpySE526I	ACGT	3 cut(s)	18, 497, 586
Hsp92II	CATG	5 cut(s)	16, 794, 869, 943, 1085
HspAI	GCGC	2 cut(s)	112, 1063
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
LmnI	GCTCC	2 cut(s)	45, 380
LweI	GCATC	4 cut(s)	130, 224, 791, 1057
MaeI	CTAG	3 cut(s)	659, 761, 1091
MaeII	ACGT	3 cut(s)	18, 497, 586
MaeIII	GTNAC	3 cut(s)	259, 493, 1313
MalI	GATC	7 cut(s)	27, 177, 375, 618, 700, 779, 864
MboI	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	6 cut(s)	252, 552, 693, 852, 989, 1368
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	995
MroXI	GAANNNNTTC	1 cut(s)	1266
MscI	TGGCCA	1 cut(s)	995
MslI	CAYNNNNRTG	2 cut(s)	17, 344
Msp20I	TGGCCA	1 cut(s)	995
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	98, 1311
MspR9I	CCNGG	2 cut(s)	1311, 1490
MvaI	CCWGG	1 cut(s)	1490
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	2 cut(s)	118, 335
NciI	CCSGG	1 cut(s)	1311
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
NlaIII	CATG	5 cut(s)	16, 794, 869, 943, 1085
NlaIV	GGNNCC	2 cut(s)	47, 92
NmeAIII	GCCGAG	2 cut(s)	9, 74
NmuCI	GTSAC	1 cut(s)	493
NspI	RCATGY	1 cut(s)	943
PagI	TCATGA	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	914
PciI	ACATGT	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	1266
PfeI	GAWTC	5 cut(s)	269, 275, 307, 521, 1517
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
PscI	ACATGT	1 cut(s)	939
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	1488
PspGI	CCWGG	1 cut(s)	1488
PspN4I	GGNNCC	2 cut(s)	47, 92
PspPI	GGNCC	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	4 cut(s)	186, 224, 323, 944
RsaNI	GTAC	4 cut(s)	185, 223, 322, 943
RseI	CAYNNNNRTG	2 cut(s)	17, 344
SacI	GAGCTC	1 cut(s)	385
Sau3AI	GATC	7 cut(s)	25, 175, 373, 616, 698, 777, 862
Sau96I	GGNCC	1 cut(s)	59
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	2 cut(s)	1311, 1490
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	4 cut(s)	130, 224, 791, 1057
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	17, 344
SmlI	CTYRAG	4 cut(s)	428, 443, 908, 1127
SmoI	CTYRAG	4 cut(s)	428, 443, 908, 1127
Sse9I	AATT	6 cut(s)	252, 552, 693, 852, 989, 1368
SseBI	AGGCCT	1 cut(s)	914
SsiI	CCGC	1 cut(s)	1287
SspMI	CTAG	3 cut(s)	659, 761, 1091
SstI	GAGCTC	1 cut(s)	385
StuI	AGGCCT	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	1309, 1488
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	4 cut(s)	165, 650, 768, 885
TaiI	ACGT	3 cut(s)	21, 500, 589
TaqI	TCGA	2 cut(s)	178, 615
TasI	AATT	6 cut(s)	252, 552, 693, 852, 989, 1368
TatI	WGTACW	2 cut(s)	184, 942
TfiI	GAWTC	5 cut(s)	269, 275, 307, 521, 1517
TscAI	CASTG	3 cut(s)	822, 1447, 1546
TseFI	GTSAC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	493
TspGWI	ACGGA	4 cut(s)	264, 373, 906, 1112
TspRI	CASTG	3 cut(s)	822, 1447, 1546
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	852
XceI	RCATGY	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	1266
XspI	CTAG	3 cut(s)	659, 761, 1091
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.