Rmu_sc0003764.1_g000005

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003764.1
OG0001465
Physical Location & Seq
Forward (+)
15520 .. 17367
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003764.1_g000005.1.cds

Sequence Viewer

Length: 672 bp
atgttggtctggcccagatttgagctactttccctctcaactgatttccccctcaactcaaaccctagcccctcctcctcttgtctcacagctcacctgaggctactaaatgccatcatggccgacgtcgccaccttgtcgtgtgctcgttgcaacaaacccgccaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctggatagagattgcatggcatccagaaaaatgcttgacacagaagctcaataagatatctgggaagggatcaaagaaagctaagccaatgactaataaaagcttctttggctttttcagtccacctgaaatcccaaagaacctgaatgatatgaaagatactgttgaggtcataaatctgaaagacgagatggaaagggattgtttctttgggttgaccattcgagatgagatcatcccacatgctgtttcatggtttatgggggaggctggactggaggagaatactcaaatatctgcacaacactccaatttcctcaagaatctatcaacaaaatgtcagggagtgtgttggaagtctaagattgatccaggtactattctcccttactctgaaactagaaattgtgcccgcgctttgccgcaaaacatactcttatcaatgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

8.31

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccII CGCG 1 cut(s) 636
AciI CCGC 4 cut(s) 162, 216, 634, 644
AclWI GGATC 2 cut(s) 298, 584
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 6 cut(s) 25, 92, 199, 268, 302, 324
AluI AGCT 6 cut(s) 25, 92, 199, 268, 302, 324
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 298, 584
AoxI GGCC 2 cut(s) 11, 120
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 634
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 2 cut(s) 122, 406
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 66, 621
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 216, 644
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 2 cut(s) 217, 645
Bme1390I CCNGG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 2 cut(s) 202, 250
BpmI CTGGAG 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 501
Bse21I CCTNAGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 594
BseGI GGATG 2 cut(s) 241, 456
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 3 cut(s) 64, 67, 515
BseSI GKGCMC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 2 cut(s) 13, 122
BsiHKAI GWGCWC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 2 cut(s) 13, 122
Bsp1286I GDGCHC 2 cut(s) 148, 634
Bsp143I GATC 3 cut(s) 290, 453, 589
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 4 cut(s) 162, 216, 634, 644
BspANI GGCC 2 cut(s) 13, 122
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 1 cut(s) 636
BspPI GGATC 2 cut(s) 298, 584
BsrI ACTGG 1 cut(s) 501
BssMI GATC 3 cut(s) 290, 453, 589
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 3 cut(s) 98, 303, 582
BstF5I GGATG 2 cut(s) 241, 456
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 3 cut(s) 293, 456, 592
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 290, 453, 589
BstMWI GCNNNNNNNGC 3 cut(s) 119, 128, 330
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 592
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 636
BstXI CCANNNNNNTGG 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 98
BsuRI GGCC 2 cut(s) 13, 122
BtsCI GGATG 2 cut(s) 241, 456
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 634
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 597
CviAII CATG 4 cut(s) 118, 237, 464, 474
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 3 cut(s) 98, 303, 582
DpnI GATC 3 cut(s) 292, 455, 591
DpnII GATC 3 cut(s) 290, 453, 589
EaeI YGGCCR 1 cut(s) 120
Eco32I GATATC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 279
FaeI CATG 4 cut(s) 121, 240, 467, 477
FaiI YATR 8 cut(s) 119, 238, 374, 395, 465, 475, 482, 653
FaqI GGGAC 1 cut(s) 162
FatI CATG 4 cut(s) 117, 236, 463, 473
FauI CCCGC 2 cut(s) 169, 641
Fnu4HI GCNGC 2 cut(s) 216, 644
FokI GGATG 2 cut(s) 228, 443
Fsp4HI GCNGC 2 cut(s) 216, 644
FspBI CTAG 2 cut(s) 66, 621
GlaI GCGC 1 cut(s) 637
GluI GCNGC 2 cut(s) 216, 644
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 2 cut(s) 13, 122
HhaI GCGC 1 cut(s) 638
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 4 cut(s) 121, 240, 467, 477
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 2 cut(s) 197, 322
HinfI GANTC 1 cut(s) 544
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 344, 438
Hpy188I TCNGA 2 cut(s) 402, 616
Hpy188III TCNNGA 5 cut(s) 206, 223, 245, 446, 541
Hpy8I GTNNAC 2 cut(s) 344, 438
Hpy99I CGWCG 2 cut(s) 128, 131
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 153, 236, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 128, 330
HpyF3I CTNAG 3 cut(s) 98, 303, 582
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 4 cut(s) 121, 240, 467, 477
HspAI GCGC 1 cut(s) 636
Kzo9I GATC 3 cut(s) 290, 453, 589
LweI GCATC 2 cut(s) 202, 250
MaeI CTAG 2 cut(s) 66, 621
MaeII ACGT 1 cut(s) 126
MalI GATC 3 cut(s) 292, 455, 591
MboI GATC 3 cut(s) 290, 453, 589
MboII GAAGA 2 cut(s) 161, 221
MhlI GDGCHC 2 cut(s) 148, 634
MluCI AATT 4 cut(s) 191, 532, 625, 667
MmeI TCCRAC 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 3 cut(s) 119, 128, 330
NdeII GATC 3 cut(s) 290, 453, 589
NlaIII CATG 4 cut(s) 121, 240, 467, 477
NspI RCATGY 1 cut(s) 467
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 2 cut(s) 217, 645
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
SatI GCNGC 2 cut(s) 216, 644
Sau3AI GATC 3 cut(s) 290, 453, 589
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 2 cut(s) 148, 634
SfaNI GCATC 2 cut(s) 202, 250
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 4 cut(s) 191, 532, 625, 667
SsiI CCGC 4 cut(s) 162, 216, 634, 644
SspMI CTAG 2 cut(s) 66, 621
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 445
TasI AATT 4 cut(s) 191, 532, 625, 667
TauI GCSGC 2 cut(s) 218, 646
TfiI GAWTC 1 cut(s) 544
TscAI CASTG 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 389, 462
TspRI CASTG 1 cut(s) 179
XceI RCATGY 1 cut(s) 467
XspI CTAG 2 cut(s) 66, 621
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.