Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

5731052 .. 5735154

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAGCAACGACATGCACGTGTCTGATCTCGGCTCTTGTGTTGGGAACGGAGATGATCAACCAGCCCTTAATCCAAGCAAGCTCCAAAGGTTCCCACCGGATACCAGCAGGCGCATTGAGCATCTTATACAGATACAGAAAGACCATGATGAGTTAAAGGCACAGTTTTACAAGGATCGAGGAGCACTTGAAGCTAAATATGAGAAACTCTATCGGCCTTTCTACGAAAAGAGATACAATGTCGTGAACGGAATTGGAGAAACTACTGATTCTGAATCAGCAAGAACAAATCAAGAAGAAAAAGGGATTCCCGAATTTTGGCTCTATGCTATGAACGCCATTTATGTGCTAGACAAAGAGATTAAAGACTATGATCAAGGAGCTCTCAAACATCTTGTGGACATCAAGTGGCTAAGGACTAACCTTAAGGTTTTCAAACTCGAGTTCTACTTTCGTCCCAACCCCTTCTTCAAAAACTCTGTTCTGACCGTGACATATCATATGACTCATGAAGATGAATTCATTATAGAGAAAATAATAGGATCAATCATTCGGGATGATATAATCCCTCGTGCTGTTTCATGGTTTACGGGAGAGGCTATGCTAGAACAGTTTGAAGAGATGGCATCAGGGCATGAAGATTTCCTTAAGAGCCTATCACAGGATGTCCAAAAGCGAGTTGAACTTCTTAAAAGAATTCAGAAAGATCATGACAGATTAAAGGCACAGTTTTACAGGGTAAGAGCAGAACTTGAAGCCAACTATCAGAAAGCGTATAACAACATGTACAATGAGCGATACGGGATTGTAAATGGTGTTGTTGAAGCTGAAAATTCGGTCAAGGATTCTGAAGTAGTAAATCAAGAGGTTGATGCAGCTGAGAAAGGTGTGCCTAACTTCTGGCTCCATGCTTTGGCAAACCATGAGTTGCTAGATGCTGAGATTAGTGTTCCTGATGGAGAGGCTCTCAAGTATCTTACAGACATCAAGTGGTTGAGGAAAGATGACTTTAAGGGGTTCATACTTCCTTTCTTTCAGAACCCTTTTCTGACCAAGACATATGAGTTTCTTGATCAATACGAAACCATTCTACAGAAAGCATCCGGGATAGAGATTGAATGGTATCCCGGAAATTGCTTGACAAGAGAATATGATAGTTTCTTCAACTTTTTCAATCCCATTCCAATTGATGAAAATACTTACAGACTCATAGAAGAGATGAAACGAGATTATTACATTGGGTCATTCGTGATGAGATTATCCCTCGTGCTGTTTTATGGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

429

Amino Acids

50.39

Weight (kDa)

5.13

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	37 - 176	2.5e-39	Nucleosome assembly protein (NAP)
NAP	PF00956	225 - 383	6.5e-34	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	913
AclWI	GGATC	2 cut(s)	183, 550
AcsI	RAATTY	4 cut(s)	314, 518, 696, 832
AcuI	CTGAAG	1 cut(s)	870
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	3 cut(s)	318, 661, 913
AflII	CTTAAG	2 cut(s)	425, 647
AflIII	ACRYGT	2 cut(s)	18, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	82, 194, 383, 827, 878
AluI	AGCT	5 cut(s)	82, 194, 383, 827, 878
Alw21I	GWGCWC	2 cut(s)	187, 385
AlwI	GGATC	2 cut(s)	183, 550
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	4 cut(s)	314, 518, 696, 832
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	1105, 1128
AvaI	CYCGRG	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	385
BauI	CACGAG	2 cut(s)	570, 1265
BbrPI	CACGTG	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	187, 385
BbvI	GCAGC	1 cut(s)	887
BccI	CCATC	2 cut(s)	616, 950
BciVI	GTATCC	2 cut(s)	94, 1134
BclI	TGATCA	3 cut(s)	55, 373, 1072
BcnI	CCSGG	2 cut(s)	1105, 1128
BfaI	CTAG	3 cut(s)	350, 605, 932
BfmI	CTRYAG	1 cut(s)	1091
BfrI	CTTAAG	2 cut(s)	425, 647
BfuI	GTATCC	2 cut(s)	94, 1134
BisI	GCNGC	1 cut(s)	876
BlsI	GCNGC	1 cut(s)	877
Bme1390I	CCNGG	2 cut(s)	1105, 1128
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	92, 905
BmrFI	CCNGG	2 cut(s)	1105, 1128
BmsI	GCATC	5 cut(s)	130, 635, 862, 925, 1109
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	2 cut(s)	1105, 1128
BsaAI	YACGTR	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 661, 913
BseGI	GGATG	3 cut(s)	562, 670, 1100
BseLI	CCNNNNNNNGG	3 cut(s)	318, 661, 913
BseMII	CTCAG	2 cut(s)	870, 930
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	887
BshFI	GGCC	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	187, 385
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	98, 1104, 1128
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	318, 661, 913
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	187, 385
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	871, 931
BspHI	TCATGA	2 cut(s)	508, 709
BspLI	GGNNCC	2 cut(s)	92, 905
BspPI	GGATC	2 cut(s)	183, 550
BspTI	CTTAAG	2 cut(s)	425, 647
BsrGI	TGTACA	1 cut(s)	786
BssMI	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
BssSI	CACGAG	2 cut(s)	570, 1265
Bst2BI	CACGAG	2 cut(s)	570, 1265
Bst4CI	ACNGT	4 cut(s)	165, 490, 612, 729
Bst6I	CTCTTC	2 cut(s)	612, 1209
BstAFI	CTTAAG	2 cut(s)	425, 647
BstAUI	TGTACA	1 cut(s)	786
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	80, 110
BstDEI	CTNAG	3 cut(s)	413, 879, 939
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	3 cut(s)	562, 670, 1100
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	7 cut(s)	28, 58, 178, 376, 545, 709, 1075
BstMBI	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 191, 335
BstNSI	RCATGY	2 cut(s)	16, 787
BstSCI	CCNGG	2 cut(s)	1103, 1126
BstSFI	CTRYAG	1 cut(s)	1091
BstV1I	GCAGC	1 cut(s)	887
BsuI	GTATCC	2 cut(s)	94, 1134
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	562, 670, 1100
Cac8I	GCNNGC	2 cut(s)	80, 110
CciI	TCATGA	2 cut(s)	508, 709
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	9 cut(s)	13, 146, 509, 582, 635, 710, 784, 908, 923
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	3 cut(s)	413, 879, 939
DpnI	GATC	7 cut(s)	27, 57, 177, 375, 544, 708, 1074
DpnII	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
Eam1104I	CTCTTC	2 cut(s)	612, 1209
EarI	CTCTTC	2 cut(s)	612, 1209
Ecl136II	GAGCTC	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	870
Eco72I	CACGTG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRI	GAATTC	2 cut(s)	518, 696
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	9 cut(s)	16, 149, 512, 585, 638, 713, 787, 911, 926
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	9 cut(s)	12, 145, 508, 581, 634, 709, 783, 907, 922
FauNDI	CATATG	2 cut(s)	501, 1060
FbaI	TGATCA	3 cut(s)	55, 373, 1072
Fnu4HI	GCNGC	1 cut(s)	876
FokI	GGATG	3 cut(s)	569, 677, 1087
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	876
FspBI	CTAG	3 cut(s)	350, 605, 932
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	876
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	3 cut(s)	98, 1104, 1128
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	9 cut(s)	16, 149, 512, 585, 638, 713, 787, 911, 926
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	6 cut(s)	269, 275, 307, 505, 845, 1206
HpaII	CCGG	3 cut(s)	98, 1104, 1128
Hpy166II	GTNNAC	3 cut(s)	247, 400, 588
Hpy188I	TCNGA	8 cut(s)	25, 274, 486, 702, 768, 850, 1038, 1050
Hpy8I	GTNNAC	3 cut(s)	247, 400, 588
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	165, 490, 612, 729
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	16, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 191, 335
HpyF3I	CTNAG	3 cut(s)	413, 879, 939
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	9 cut(s)	16, 149, 512, 585, 638, 713, 787, 911, 926
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	3 cut(s)	55, 373, 1072
Kzo9I	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
LmnI	GCTCC	4 cut(s)	87, 182, 380, 909
Lsp1109I	GCAGC	1 cut(s)	887
LweI	GCATC	5 cut(s)	130, 635, 862, 925, 1109
MaeI	CTAG	3 cut(s)	350, 605, 932
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	7 cut(s)	27, 57, 177, 375, 544, 708, 1074
MboI	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
MboII	GAAGA	7 cut(s)	308, 460, 524, 629, 650, 1153, 1226
MfeI	CAATTG	1 cut(s)	1185
MhlI	GDGCHC	2 cut(s)	187, 385
MluCI	AATT	7 cut(s)	252, 314, 518, 696, 832, 1132, 1185
MlyI	GAGTC	2 cut(s)	499, 1200
MnlI	CCTC	7 cut(s)	173, 579, 589, 859, 955, 990, 1274
MroXI	GAANNNNTTC	1 cut(s)	1086
MseI	TTAA	8 cut(s)	69, 155, 363, 426, 648, 690, 719, 1011
MslI	CAYNNNNRTG	3 cut(s)	17, 344, 513
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	2 cut(s)	425, 647
MspI	CCGG	3 cut(s)	98, 1104, 1128
MspR9I	CCNGG	2 cut(s)	1105, 1128
MunI	CAATTG	1 cut(s)	1185
MwoI	GCNNNNNNNGC	3 cut(s)	118, 191, 335
NciI	CCSGG	2 cut(s)	1105, 1128
NdeI	CATATG	2 cut(s)	501, 1060
NdeII	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
NlaIII	CATG	9 cut(s)	16, 149, 512, 585, 638, 713, 787, 911, 926
NlaIV	GGNNCC	2 cut(s)	92, 905
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	2 cut(s)	16, 787
PaeR7I	CTCGAG	1 cut(s)	440
PagI	TCATGA	2 cut(s)	508, 709
PciI	ACATGT	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	4 cut(s)	269, 275, 307, 845
PflMI	CCANNNNNTGG	1 cut(s)	913
PfoI	TCCNGGA	2 cut(s)	1103, 1126
PkrI	GCNGC	1 cut(s)	877
PleI	GAGTC	2 cut(s)	499, 1200
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	2 cut(s)	499, 1200
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	783
Psp124BI	GAGCTC	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	92, 905
PspXI	VCTCGAGB	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	3 cut(s)	17, 344, 513
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	8 cut(s)	69, 155, 363, 426, 648, 690, 719, 1011
SatI	GCNGC	1 cut(s)	876
Sau3AI	GATC	7 cut(s)	25, 55, 175, 373, 542, 706, 1072
SchI	GAGTC	2 cut(s)	499, 1200
ScrFI	CCNGG	2 cut(s)	1105, 1128
SduI	GDGCHC	2 cut(s)	187, 385
SfaNI	GCATC	5 cut(s)	130, 635, 862, 925, 1109
SfcI	CTRYAG	1 cut(s)	1091
Sfr274I	CTCGAG	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	3 cut(s)	17, 344, 513
SmlI	CTYRAG	4 cut(s)	425, 440, 647, 968
SmoI	CTYRAG	4 cut(s)	425, 440, 647, 968
Sse9I	AATT	7 cut(s)	252, 314, 518, 696, 832, 1132, 1185
SspMI	CTAG	3 cut(s)	350, 605, 932
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	1103, 1126
TaaI	ACNGT	4 cut(s)	165, 490, 612, 729
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	178, 441
TaqII	GACCGA	1 cut(s)	826
TasI	AATT	7 cut(s)	252, 314, 518, 696, 832, 1132, 1185
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	4 cut(s)	269, 275, 307, 845
Tru1I	TTAA	8 cut(s)	69, 155, 363, 426, 648, 690, 719, 1011
Tru9I	TTAA	8 cut(s)	69, 155, 363, 426, 648, 690, 719, 1011
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	9 cut(s)	347, 511, 525, 531, 570, 651, 1009, 1206, 1235
TspGWI	ACGGA	2 cut(s)	63, 264
Van91I	CCANNNNNTGG	1 cut(s)	913
Vha464I	CTTAAG	2 cut(s)	425, 647
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	4 cut(s)	314, 518, 696, 832
XceI	RCATGY	2 cut(s)	16, 787
XhoI	CTCGAG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	1086
XspI	CTAG	3 cut(s)	350, 605, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.