Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

6965914 .. 6972122

Gene Structure 6209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTCCAGCCGGTGGAGAAATCATAGTGGTGGCTGTGCAGAATTCGAGTTTTAGATTGACTCGGCAGGCGAGATTCTCTTTTGTTTCGGGTTTTCACGGAGGCGGTAGCTTCCTTGATCTGTTGCCTGTGCTCGGATCCAATTCGGATCCTCTCTGTGATGTCACCACTTCATCATCACCGCCAATCCCCTTACGATCTCGCCGGCGCAAGTCGAAATCAGAGTGGAATTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCCGAGGACCATGATGAATTAAAGGCACAGTTTTACAAGGATCGCGGAGCACTTGAAGCTAAATATGAGGAACTCTATCAGCTTCTGTACGACAAGAGATATAATATCGTAAACGCAATTGGAGTCACTAGTGAACCAACAACAACAAATCAAGAGGAAAGGGGGATACCTGATTTTTGGCTCTATGCTTTGAAAGCCTATAGTGCCATAAATAAATATATTGAACACTTTGATGAAGGAGCTCTCAAGCATCTTGAAAACATCAAGTGGCATAGGACAAAACTGGAGTTCTACTTTCGTCGAAATCCCTTCTTCAAAAACTCTGTTTTGACCCTGACATATCATATGTTTGATGAAGATGAAACCATTATAGATAAAATAGTAGGGATAGAGATCGAATGGTTTCCCGAAAACTGTTTAACAAAAGAAAGTGAAAGTTTCTTCAATTTTGTTTATCCCCTTCAAATTGATGAAGATGCTGAGATGGAACTCATAGAAGACATGAGTCGAGATTATTACATTGGGTCAACCATTCGCAATCAGATCATCCCTCGTGCTGTTTTATGGTACTTAGGGGAGGCTGTCCTAGGAGATAAGGTGGTTGGTGTTACACACTCGGAAGAAAGCGATGAATATATAGATGATTTCAGTGAAGATGAAGATGACGAGAGCGAAGATGAAGACAATGAAGAGGAAGATGGTAATGGCAATGATGAGAGTGAAACGCCCATCTTTCTTGGAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

339

Amino Acids

39.33

Weight (kDa)

4.5

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	91 - 232	4.6e-33	Nucleosome assembly protein (NAP)
NAP	PF00956	231 - 282	7.3e-11	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	105, 182, 312
AclWI	GGATC	5 cut(s)	132, 143, 145, 156, 315
AcsI	RAATTY	2 cut(s)	43, 229
AfaI	GTAC	2 cut(s)	356, 836
AfiI	CCNNNNNNNGG	2 cut(s)	14, 134
AgsI	TTSAA	7 cut(s)	323, 460, 491, 524, 583, 712, 731
AhlI	ACTAGT	1 cut(s)	395
AluBI	AGCT	4 cut(s)	111, 326, 349, 509
AluI	AGCT	4 cut(s)	111, 326, 349, 509
Alw21I	GWGCWC	3 cut(s)	135, 319, 511
AlwI	GGATC	5 cut(s)	132, 143, 145, 156, 315
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	43, 229
Asp700I	GAANNNNTTC	1 cut(s)	669
AspA2I	CCTAGG	1 cut(s)	853
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	267, 274
AsuHPI	GGTGA	2 cut(s)	157, 171
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	274
AvrII	CCTAGG	1 cut(s)	853
BamHI	GGATCC	2 cut(s)	137, 148
BanII	GRGCYC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	2 cut(s)	771, 954
Bbv12I	GWGCWC	3 cut(s)	135, 319, 511
BccI	CCATC	3 cut(s)	745, 959, 1004
BciVI	GTATCC	1 cut(s)	426
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	396, 854
BfmI	CTRYAG	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	426
BlnI	CCTAGG	1 cut(s)	853
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	267, 274
BmiI	GGNNCC	3 cut(s)	6, 139, 150
BmsI	GCATC	2 cut(s)	526, 733
BoxI	GACNNNNGTC	1 cut(s)	771
BpiI	GAAGAC	2 cut(s)	771, 954
BpmI	CTGGAG	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	270, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 134
Bse118I	RCCGGY	2 cut(s)	11, 204
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	982
Bse8I	GATNNNNATC	1 cut(s)	659
BseDI	CCNNGG	2 cut(s)	270, 853
BseGI	GGATG	1 cut(s)	813
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	2 cut(s)	14, 134
BseMI	GCAATG	1 cut(s)	982
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	268
BsiHKAI	GWGCWC	3 cut(s)	135, 319, 511
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	12, 205
BslI	CCNNNNNNNGG	2 cut(s)	14, 134
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	135, 319, 511
Bsp143I	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
BspACI	CCGC	3 cut(s)	105, 182, 312
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	6, 139, 150
BspPI	GGATC	5 cut(s)	132, 143, 145, 156, 315
BsrDI	GCAATG	1 cut(s)	982
BsrFI	RCCGGY	2 cut(s)	11, 204
BsrI	ACTGG	1 cut(s)	555
BssAI	RCCGGY	2 cut(s)	11, 204
BssECI	CCNNGG	2 cut(s)	270, 853
BssMI	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	853
Bst2BI	CACGAG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	297, 683
Bst6I	CTCTTC	1 cut(s)	951
BstC8I	GCNNGC	2 cut(s)	69, 206
BstDEI	CTNAG	2 cut(s)	747, 838
BstF5I	GGATG	1 cut(s)	813
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	7 cut(s)	121, 140, 151, 200, 310, 663, 813
BstMBI	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 461, 470
BstPAI	GACNNNNGTC	1 cut(s)	771
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	2 cut(s)	771, 954
BstX2I	RGATCY	2 cut(s)	137, 148
BstYI	RGATCY	2 cut(s)	137, 148
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	922
Cac8I	GCNNGC	2 cut(s)	69, 206
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	2 cut(s)	11, 204
Cfr13I	GGNCC	2 cut(s)	267, 274
Csp6I	GTAC	2 cut(s)	355, 835
CviAII	CATG	2 cut(s)	278, 769
CviQI	GTAC	2 cut(s)	355, 835
DdeI	CTNAG	2 cut(s)	747, 838
DpnI	GATC	7 cut(s)	120, 139, 150, 199, 309, 662, 812
DpnII	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	2 cut(s)	281, 772
FatI	CATG	2 cut(s)	277, 768
FauNDI	CATATG	1 cut(s)	612
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	2 cut(s)	396, 854
GlaI	GCGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	12, 205
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	281, 772
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HinfI	GANTC	4 cut(s)	61, 75, 390, 772
HpaII	CCGG	2 cut(s)	12, 205
HphI	GGTGA	2 cut(s)	157, 171
Hpy166II	GTNNAC	3 cut(s)	379, 401, 795
Hpy188I	TCNGA	5 cut(s)	137, 148, 223, 810, 886
Hpy188III	TCNNGA	4 cut(s)	419, 521, 674, 776
Hpy8I	GTNNAC	3 cut(s)	379, 401, 795
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	3 cut(s)	497, 586, 737
HpyCH4III	ACNGT	2 cut(s)	297, 683
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 461, 470
HpyF3I	CTNAG	2 cut(s)	747, 838
Hsp92II	CATG	2 cut(s)	281, 772
HspAI	GCGC	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
LmnI	GCTCC	3 cut(s)	10, 314, 506
LpnPI	CCDG	8 cut(s)	21, 25, 53, 141, 218, 450, 536, 614
LweI	GCATC	2 cut(s)	526, 733
MaeI	CTAG	2 cut(s)	396, 854
MaeIII	GTNAC	3 cut(s)	163, 391, 874
MalI	GATC	7 cut(s)	120, 139, 150, 199, 309, 662, 812
MboI	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	137, 148
MhlI	GDGCHC	3 cut(s)	135, 319, 511
MluCI	AATT	8 cut(s)	43, 142, 229, 284, 384, 712, 732, 1012
MlyI	GAGTC	3 cut(s)	55, 399, 781
MnlI	CCTC	9 cut(s)	95, 162, 258, 265, 328, 415, 828, 838, 952
MreI	CGCCGGCG	1 cut(s)	204
MroNI	GCCGGC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	3 cut(s)	287, 686, 1015
MslI	CAYNNNNRTG	2 cut(s)	29, 498
MspI	CCGG	2 cut(s)	12, 205
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	323, 461, 470
NaeI	GCCGGC	1 cut(s)	206
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	281, 772
NlaIV	GGNNCC	3 cut(s)	6, 139, 150
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	163, 391
PdiI	GCCGGC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	14
PleI	GAGTC	3 cut(s)	55, 398, 780
PpsI	GAGTC	3 cut(s)	55, 398, 780
PshAI	GACNNNNGTC	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	511
PspN4I	GGNNCC	3 cut(s)	6, 139, 150
PspPI	GGNCC	2 cut(s)	267, 274
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	137, 148
RsaI	GTAC	2 cut(s)	356, 836
RsaNI	GTAC	2 cut(s)	355, 835
RseI	CAYNNNNRTG	2 cut(s)	29, 498
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	287, 686, 1015
Sau3AI	GATC	7 cut(s)	118, 137, 148, 197, 307, 660, 810
Sau96I	GGNCC	2 cut(s)	267, 274
SchI	GAGTC	3 cut(s)	55, 399, 781
SduI	GDGCHC	3 cut(s)	135, 319, 511
SetI	ASST	6 cut(s)	113, 328, 351, 439, 511, 867
SfaNI	GCATC	2 cut(s)	526, 733
SfcI	CTRYAG	1 cut(s)	466
SgrAI	CRCCGGYG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	29, 498
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	8 cut(s)	43, 142, 229, 284, 384, 712, 732, 1012
SsiI	CCGC	3 cut(s)	105, 182, 312
SspMI	CTAG	2 cut(s)	396, 854
SstI	GAGCTC	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	2 cut(s)	297, 683
TaqI	TCGA	5 cut(s)	47, 215, 568, 663, 775
TasI	AATT	8 cut(s)	43, 142, 229, 284, 384, 712, 732, 1012
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	3 cut(s)	287, 686, 1015
Tru9I	TTAA	3 cut(s)	287, 686, 1015
TscAI	CASTG	1 cut(s)	922
TseFI	GTSAC	2 cut(s)	163, 391
Tsp45I	GTSAC	2 cut(s)	163, 391
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	922
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	43, 229
XmaJI	CCTAGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	396, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.