Rh7DG400300

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001465
Physical Location & Seq
Forward (+)
55023888 .. 55026438
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG400300.1

Sequence Viewer

Length: 354 bp
ATGGGCGACGTCGCCACCTTGTCGTGTGCTCGTTGCAGCAAACCTGCCAATCTTCAGTATGAAAAATATGATGCATTGAAAGCAGAGTTTGACAAGGATAGAGCATCAATTCAAGCAAAATATCTTCAATCATGTCAAACTTTGTACGCACAGCGATACAATATCATAAATGATGAAGCAGATGGAGAGAGTATTGATCCTAAAGCAGATGGAGTTAGTAGCGACTCTGAAGAGGAAGCATTTGTCAATGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGACGAGATTAGCTTGGTAGAAATGCCAGAGCGAGCAAGAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

4.37

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 21 - 106 1.9e-14 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 259
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 38, 249
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 3 cut(s) 79, 113, 128
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 176, 203
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 2 cut(s) 61, 113
BsaHI GRCGYC 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 281
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 339
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 48
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 132
CviJI RGCY 2 cut(s) 274, 318
CviKI_1 RGCY 2 cut(s) 274, 318
CviQI GTAC 1 cut(s) 145
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 38, 249
EcoT22I ATGCAT 2 cut(s) 76, 283
FaeI CATG 1 cut(s) 135
FaiI YATR 7 cut(s) 60, 69, 133, 167, 279, 300, 302
FatI CATG 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 1 cut(s) 135
HinfI GANTC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 229
Hpy99I CGWCG 3 cut(s) 11, 14, 311
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 36, 74, 281, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 1 cut(s) 135
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 57, 256, 345
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 61, 113
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 44, 116, 242
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 1 cut(s) 226
Mph1103I ATGCAT 2 cut(s) 76, 283
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 1 cut(s) 261
NsiI ATGCAT 2 cut(s) 76, 283
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 261
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 12, 20, 46, 320
SfaNI GCATC 2 cut(s) 61, 113
Sse9I AATT 1 cut(s) 108
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 108
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 75, 189
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 2 cut(s) 76, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.