Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

67152591 .. 67154829

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG406400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCAACATAAGCGCGTCCGATCTCTGTCCTTTCGTTGGGAACGGAGATGATCAACCAGGTCTTAATCCAAACAAGCACAATGAACTCCATCGAATCTCATCGGATGTCCAAAAGCGCATTCAGTATCTTATCGTAAACGCAATTGGAGTCACTTTGCAGAGATATAATATCGTAAACGCAATTGGAGTCACTACTGAACCAGCAACAACAAATCAAGAGGGTAATGATCATCTTCCCTGCTACCTTTATTATATATATCTTAAGGGGATACCTGATTTTTGGCTCTATGCTTTGAAAGCCTATAGTGCGATAAATAAATATATTGAACACTATGATGAAGGAGCTCTCAAACATCTTGAAAACATCAGGTGGCTTAGGACAGAAAACCTTAAGGTTTTCAAACTGGAGTTCTACTTTCGTCGAAACCCCTACTTCAAAAACTCCGTTTTGACCCTAACATATCATATGCTTGATGAAGATGAGTCCATTATAGATAAAATAATAGGGACGGAAATTGAGTGGTATTCAAAAAATCGTTTGACGAAACGTAGAAGTTTCTTCGACCTTTTTAATCCACCTGAAGTCCATAATAACTATAAATACTTTGATGACTTGTTTTCTTCTATTCTTGGTATTATCATTTTTTGCTGCTCCATCATTCGGGATGATATAATCTCTCGTGCTGTATTATGGTTTACGGGGGAGGCTTCGCTAGAGCAGATGATAGAGATCACAACAAGGCATTCATGTTTCCTCAATAACCCATCACTGGATGTCCAAAAGCATGTTGACCATCTCAGAAACATTCAGGACAGTGTTCTCAAGGCTGCCTTCAACTTACAAACAGAACATAACAAAGAGATTAAGGCCTACGTGACTGTAATGCCACGGATCAAGAACATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

303

Amino Acids

35.44

Weight (kDa)

6.41

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	88 - 184	4.6e-28	Nucleosome assembly protein (NAP)
NAP	PF00956	181 - 236	7.1e-07	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	38, 663, 772
AflII	CTTAAG	2 cut(s)	263, 392
AgsI	TTSAA	7 cut(s)	298, 329, 362, 403, 439, 531, 838
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	902
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	2 cut(s)	651, 830
AspLEI	GCGC	2 cut(s)	17, 120
BanII	GRGCYC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	638, 817
BccI	CCATC	4 cut(s)	99, 665, 775, 804
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	264
BclI	TGATCA	2 cut(s)	52, 229
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	304
BfrI	CTTAAG	2 cut(s)	263, 392
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	652, 831
BlsI	GCNGC	2 cut(s)	653, 832
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	809
BsaAI	YACGTR	1 cut(s)	877
BsaBI	GATNNNNATC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 663, 772
Bse1I	ACTGG	2 cut(s)	411, 777
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	890
BseGI	GGATG	3 cut(s)	112, 673, 781
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	3 cut(s)	38, 663, 772
BseMII	CTCAG	1 cut(s)	814
BseNI	ACTGG	2 cut(s)	411, 777
BseXI	GCAGC	2 cut(s)	638, 817
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	38, 663, 772
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	120, 745
BsnI	GGCC	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	5 cut(s)	22, 52, 229, 732, 894
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	902
BspTI	CTTAAG	2 cut(s)	263, 392
BsrI	ACTGG	2 cut(s)	411, 777
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	5 cut(s)	22, 52, 229, 732, 894
BssSI	CACGAG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	818, 883
BstAFI	CTTAAG	2 cut(s)	263, 392
BstBAI	YACGTR	1 cut(s)	877
BstDEI	CTNAG	2 cut(s)	377, 800
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	3 cut(s)	112, 673, 781
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	17, 120
BstKTI	GATC	5 cut(s)	25, 55, 232, 735, 897
BstMBI	GATC	5 cut(s)	22, 52, 229, 732, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 299, 308
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	638, 817
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	3 cut(s)	112, 673, 781
BtsIMutI	CAGTG	2 cut(s)	770, 823
CfoI	GCGC	2 cut(s)	17, 120
CseI	GACGC	1 cut(s)	6
CsiI	ACCWGGT	1 cut(s)	58
CviAII	CATG	2 cut(s)	750, 788
CviJI	RGCY	7 cut(s)	286, 302, 347, 376, 710, 830, 872
CviKI_1	RGCY	7 cut(s)	286, 302, 347, 376, 710, 830, 872
DdeI	CTNAG	2 cut(s)	377, 800
DpnI	GATC	5 cut(s)	24, 54, 231, 734, 896
DpnII	GATC	5 cut(s)	22, 52, 229, 732, 894
Ecl136II	GAGCTC	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	349
FaeI	CATG	2 cut(s)	753, 791
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	2 cut(s)	749, 787
FauNDI	CATATG	1 cut(s)	468
FbaI	TGATCA	2 cut(s)	52, 229
Fnu4HI	GCNGC	2 cut(s)	652, 831
FokI	GGATG	3 cut(s)	119, 680, 788
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	2 cut(s)	652, 831
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	16, 119
GluI	GCNGC	2 cut(s)	652, 831
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	872
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	17, 120
Hin1II	CATG	2 cut(s)	753, 791
Hin6I	GCGC	2 cut(s)	15, 118
HinP1I	GCGC	2 cut(s)	15, 118
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	4 cut(s)	96, 150, 189, 485
Hpy166II	GTNNAC	4 cut(s)	139, 178, 699, 793
Hpy188I	TCNGA	3 cut(s)	22, 106, 803
Hpy188III	TCNNGA	5 cut(s)	218, 359, 665, 812, 898
Hpy8I	GTNNAC	4 cut(s)	139, 178, 699, 793
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	2 cut(s)	335, 844
HpyCH4III	ACNGT	2 cut(s)	818, 883
HpyCH4IV	ACGT	2 cut(s)	550, 876
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 299, 308
HpyF3I	CTNAG	2 cut(s)	377, 800
HpySE526I	ACGT	2 cut(s)	550, 876
Hsp92II	CATG	2 cut(s)	753, 791
HspAI	GCGC	2 cut(s)	15, 118
Ksp22I	TGATCA	2 cut(s)	52, 229
Kzo9I	GATC	5 cut(s)	22, 52, 229, 732, 894
LmnI	GCTCC	2 cut(s)	344, 659
Lsp1109I	GCAGC	2 cut(s)	638, 817
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	2 cut(s)	550, 876
MaeIII	GTNAC	3 cut(s)	151, 190, 877
MalI	GATC	5 cut(s)	24, 54, 231, 734, 896
MboI	GATC	5 cut(s)	22, 52, 229, 732, 894
MboII	GAAGA	4 cut(s)	227, 491, 553, 615
MfeI	CAATTG	2 cut(s)	144, 183
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	4 cut(s)	144, 183, 516, 907
MlyI	GAGTC	3 cut(s)	159, 198, 494
MnlI	CCTC	3 cut(s)	214, 700, 767
MseI	TTAA	6 cut(s)	66, 264, 393, 573, 867, 910
MslI	CAYNNNNRTG	1 cut(s)	336
MspCI	CTTAAG	2 cut(s)	263, 392
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	2 cut(s)	144, 183
Mva1269I	GAATGC	2 cut(s)	120, 745
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	12, 299, 308
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	5 cut(s)	22, 52, 229, 732, 894
NlaIII	CATG	2 cut(s)	753, 791
NmuCI	GTSAC	3 cut(s)	151, 190, 877
NspI	RCATGY	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	872
PctI	GAATGC	2 cut(s)	120, 745
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	653, 832
PleI	GAGTC	3 cut(s)	158, 197, 493
PpsI	GAGTC	3 cut(s)	158, 197, 493
Ppu21I	YACGTR	1 cut(s)	877
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	6 cut(s)	66, 264, 393, 573, 867, 910
SatI	GCNGC	2 cut(s)	652, 831
Sau3AI	GATC	5 cut(s)	22, 52, 229, 732, 894
SchI	GAGTC	3 cut(s)	159, 198, 494
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	349
SexAI	ACCWGGT	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	263, 392, 824
SmoI	CTYRAG	3 cut(s)	263, 392, 824
Sse9I	AATT	4 cut(s)	144, 183, 516, 907
SseBI	AGGCCT	1 cut(s)	872
SspMI	CTAG	1 cut(s)	716
SstI	GAGCTC	1 cut(s)	349
StuI	AGGCCT	1 cut(s)	872
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	818, 883
TaiI	ACGT	2 cut(s)	553, 879
TaqI	TCGA	3 cut(s)	94, 424, 564
TasI	AATT	4 cut(s)	144, 183, 516, 907
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	6 cut(s)	66, 264, 393, 573, 867, 910
Tru9I	TTAA	6 cut(s)	66, 264, 393, 573, 867, 910
TscAI	CASTG	2 cut(s)	777, 823
TseFI	GTSAC	3 cut(s)	151, 190, 877
TseI	GCWGC	2 cut(s)	651, 830
Tsp45I	GTSAC	3 cut(s)	151, 190, 877
TspDTI	ATGAA	4 cut(s)	99, 354, 492, 738
TspGWI	ACGGA	4 cut(s)	60, 436, 527, 907
TspRI	CASTG	2 cut(s)	777, 823
Vha464I	CTTAAG	2 cut(s)	263, 392
XceI	RCATGY	1 cut(s)	791
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.