Rh6BG169300

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001465
Physical Location & Seq
Reverse (-)
27960331 .. 27982658
22328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG169300.1

Sequence Viewer

Length: 530 bp
ATGAGAGTTTTCTCCAAACTGGGGGAATGCTCAGTTGTGCATCGAAAGCAATACATGTTCTCATTTCTCAAAGCTAGTCACCAGGTTCTTCTGGAGCTAATTAGAAGTACATTGATATTGTTAGTGAGCTATATCGATCCTACTTGGACTGATGGTTTGATTGTGAAGAGCAAAGGTGGAGATGGTAGCTCGATTGGTAATGATTCAAAAAGATCAATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAAATGATTTGTTGACCATTCGAGATGAGATCATCCCACGTGCCATTTCATGGTTTATGGGGAAGGCTGGACTGGAGGAGAATACCCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAAAAATATGTCAGGGAGTATGTTGGAAGTCTAAGATTGATCCAGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGAGGAGATTACTTATCGTGATGAGCGAGGGGTGGACAAGAAGGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

176

Amino Acids

20.05

Weight (kDa)

6.31

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 140 - 171 9.2e-06 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 309
AclWI GGATC 3 cut(s) 131, 262, 419
AcvI CACGTG 1 cut(s) 299
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 3 cut(s) 21, 309, 434
AflIII ACRYGT 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 74, 97, 129, 189
AluI AGCT 4 cut(s) 74, 97, 129, 189
AlwI GGATC 3 cut(s) 131, 262, 419
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AsiGI ACCGGT 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 439
BbrPI CACGTG 1 cut(s) 299
BccI CCATC 2 cut(s) 146, 176
BciT130I CCWGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 222, 441
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 113, 353
BpuEI CTTGAG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 309, 434
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 24, 336
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 135
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 3 cut(s) 21, 309, 434
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 24, 336
BseRI GAGGAG 3 cut(s) 263, 350, 503
BsgI GTGCAG 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 439
BshTI ACCGGT 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 135
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 21, 309, 434
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 32
Bsp143I GATC 5 cut(s) 136, 212, 254, 288, 424
BspCNI CTCAG 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 222, 441
BspPI GGATC 3 cut(s) 131, 262, 419
BspQI GCTCTTC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 2 cut(s) 24, 336
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 5 cut(s) 136, 212, 254, 288, 424
Bst2UI CCWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 31, 417
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 5 cut(s) 139, 215, 257, 291, 427
BstMBI GATC 5 cut(s) 136, 212, 254, 288, 424
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 223
CviAII CATG 2 cut(s) 55, 309
CviJI RGCY 6 cut(s) 74, 97, 129, 189, 326, 454
CviKI_1 RGCY 6 cut(s) 74, 97, 129, 189, 326, 454
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 31, 417
DpnI GATC 5 cut(s) 138, 214, 256, 290, 426
DpnII GATC 5 cut(s) 136, 212, 254, 288, 424
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 463
FaeI CATG 2 cut(s) 58, 312
FaqI GGGAC 1 cut(s) 234
FatI CATG 2 cut(s) 54, 308
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 75
GsuI CTGGAG 2 cut(s) 113, 353
HapII CCGG 1 cut(s) 224
Hin1II CATG 2 cut(s) 58, 312
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 203, 379
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 273, 520
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 5 cut(s) 92, 281, 376, 428, 503
Hpy8I GTNNAC 2 cut(s) 273, 520
HpyAV CCTTC 2 cut(s) 316, 520
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 40, 356, 461, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 2 cut(s) 31, 417
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 58, 312
Kzo9I GATC 5 cut(s) 136, 212, 254, 288, 424
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 94
LweI GCATC 1 cut(s) 49
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 77
MalI GATC 5 cut(s) 138, 214, 256, 290, 426
MboI GATC 5 cut(s) 136, 212, 254, 288, 424
MboII GAAGA 2 cut(s) 80, 178
MflI RGATCY 1 cut(s) 254
MluCI AATT 2 cut(s) 99, 367
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 6 cut(s) 241, 244, 328, 383, 481, 506
Mph1103I ATGCAT 1 cut(s) 463
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 5 cut(s) 136, 212, 254, 288, 424
NlaIII CATG 2 cut(s) 58, 312
NlaIV GGNNCC 2 cut(s) 222, 441
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 203, 379
PflMI CCANNNNNTGG 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 223
PmaCI CACGTG 1 cut(s) 299
PmlI CACGTG 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 299
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 81
PspCI CACGTG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 222, 441
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 161
Sau3AI GATC 5 cut(s) 136, 212, 254, 288, 424
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 83
SetI ASST 7 cut(s) 76, 87, 99, 131, 178, 191, 301
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 99, 367
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 301
TaqI TCGA 4 cut(s) 43, 135, 191, 280
TasI AATT 2 cut(s) 99, 367
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 2 cut(s) 203, 379
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 221
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.