Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

30367109 .. 30370165

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAAGAACTACAAGGATAACGTCAAGGCTTCCGGTTTCGGATATACTGCCGCTGGGAAAAGAGAGCTTGGCCTACGCTATCTAAATCCTGTCAAGAATTCCTATCTACTCAAGATCCTTTCAGTCGATGCCATAAATCGCGTCGAGGATCTTATTGAGATTCAGGAAGTGCAGGACCGATTAAAGAACGAGTTCTACAAGGAGAGGGGAGCACTTGAAGCCAGATATGAGAAATCATATGAACCTCTGTACGAACAGCGATACAATATCACAAATGGAGTCAATATTGATTGTGAATCTACAACAACAAATCAAGAGGAAAAGGGGGTGCCTTATTTTTGGCTCTACGCTTTCAGAGGCAATGATGCGCTAAATGATATGATCATGGACCATGATGAGGGAGTTCTCAAACATCTAGAAAACGTCAAGTGGTTTAGGACCGCTAATCTCAAGGTTTTCAAACTCGAGTTCTACTTTTGTCCCAACCATTTCTTGAAGAACTCTATCTTGACCGTGACGTATCACATGATTGATGATGATGATTCCATTATAGAAAAAATAATAGGGACGGAAATTCATTGGTATTCGGAAAACTGCTTGGAGAAAGACAGCACTGGGCATTCTAGGAGTTTCTTTAACATTTTCAGTCCGACTGAAGTTCATGACAAGCATAAAGACCTAAAAGTGAAATACGAGATGCAAGAAAATTATTCAATTGGGTTAACCATTCGGGATGAGATCATTCCTCGTGCTATTTCGTGGTTTACGGGAGAGGCTGCGCTACAGCATATGATCAAGATCACAACCAAACATTCCAATTTCCTTGATAGCCTATCCCCGGGTGTTAAAAAGCATGTTAATATTCTTAAAAACATTCAGAGCGACCATGATGAACTGAAGAAAATGTTTTACAAGGAAAGAGCAAACATTGAAGCAAAGTATCAAAACTTGTTTCAGAATTTGTACCATAAGCGATACGATATTGTGAACGGTGTTGTTCAAGCTAAAACAGTGTCAAATGACTCCAAAGCCTCAATTAATCAAGGGGATATTACAAATCGAGATGTTACAGCTCCCGAAGGGAAAGGAATACCTAACTTTTGGCGCCATGCTTTGGTAAACCATGAGTTGCTAGATGCGGAGGTCAGGATCAGTTGGTGTTTTGTTGTTTATTTTGTTTATATATTTTTAACTTTGTCTAGAAATCACGTATTCCCTAATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

409

Amino Acids

47.77

Weight (kDa)

6.48

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	46 - 258	5.4e-49	Nucleosome assembly protein (NAP)
NAP	PF00956	285 - 382	1.2e-18	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	328, 1104
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	51, 441, 1139
AclWI	GGATC	3 cut(s)	109, 156, 1157
AcsI	RAATTY	3 cut(s)	97, 573, 958
AcuI	CTGAAG	2 cut(s)	675, 917
AcyI	GRCGYC	1 cut(s)	1105
AfaI	GTAC	2 cut(s)	251, 965
AfiI	CCNNNNNNNGG	3 cut(s)	397, 838, 1114
AgsI	TTSAA	6 cut(s)	218, 460, 496, 714, 932, 1001
AluBI	AGCT	3 cut(s)	67, 1004, 1073
AluI	AGCT	3 cut(s)	67, 1004, 1073
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	109, 156, 1157
Ama87I	CYCGRG	2 cut(s)	464, 838
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	776
ApoI	RAATTY	3 cut(s)	97, 573, 958
AseI	ATTAAT	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	370, 781, 1107
AspS9I	GGNCC	3 cut(s)	175, 388, 438
AsuC2I	CCSGG	2 cut(s)	839, 840
AvaI	CYCGRG	2 cut(s)	464, 838
AvaII	GGWCC	3 cut(s)	175, 388, 438
BanI	GGYRCC	2 cut(s)	328, 1104
BauI	CACGAG	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	763
BclI	TGATCA	2 cut(s)	381, 792
BcnI	CCSGG	2 cut(s)	839, 840
BfaI	CTAG	4 cut(s)	416, 624, 1133, 1200
BfmI	CTRYAG	1 cut(s)	782
BfoI	RGCGCY	1 cut(s)	1108
BisI	GCNGC	2 cut(s)	51, 777
BlsI	GCNGC	2 cut(s)	52, 778
Bme1390I	CCNGG	2 cut(s)	839, 840
Bme18I	GGWCC	3 cut(s)	175, 388, 438
BmeT110I	CYCGRG	2 cut(s)	464, 838
BmgT120I	GGNCC	3 cut(s)	175, 388, 438
BmiI	GGNNCC	2 cut(s)	330, 1106
BmrFI	CCNGG	2 cut(s)	839, 840
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	4 cut(s)	118, 355, 687, 1126
BmuI	ACTGGG	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	95, 434
BpuMI	CCSGG	2 cut(s)	839, 840
BsaAI	YACGTR	1 cut(s)	1210
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	1105
BsaJI	CCNNGG	2 cut(s)	837, 838
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 838, 1114
Bse1I	ACTGG	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	837, 838
BseGI	GGATG	1 cut(s)	739
BseJI	GATNNNNATC	1 cut(s)	797
BseLI	CCNNNNNNNGG	3 cut(s)	397, 838, 1114
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	763
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	328, 1104
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	2 cut(s)	464, 838
BsiSI	CCGG	2 cut(s)	33, 839
BslFI	GGGAC	2 cut(s)	465, 580
BslI	CCNNNNNNNGG	3 cut(s)	397, 838, 1114
BsmFI	GGGAC	2 cut(s)	465, 580
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	2 cut(s)	464, 838
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
BspACI	CCGC	3 cut(s)	51, 441, 1139
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	330, 1106
BspPI	GGATC	3 cut(s)	109, 156, 1157
BspT107I	GGYRCC	2 cut(s)	328, 1104
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	837, 838
BssMI	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
BssNI	GRCGYC	1 cut(s)	1105
BssSI	CACGAG	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	514, 992, 1012
BstACI	GRCGYC	1 cut(s)	1105
BstBAI	YACGTR	1 cut(s)	1210
BstF5I	GGATG	1 cut(s)	739
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	1108
BstHHI	GCGC	3 cut(s)	370, 781, 1107
BstKTI	GATC	7 cut(s)	117, 151, 384, 741, 795, 801, 1152
BstMBI	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	2 cut(s)	837, 838
BstSFI	CTRYAG	1 cut(s)	782
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	763
BstX2I	RGATCY	2 cut(s)	114, 148
BstYI	RGATCY	2 cut(s)	114, 148
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	739
BtsIMutI	CAGTG	2 cut(s)	612, 1017
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	3 cut(s)	370, 781, 1107
Cfr13I	GGNCC	3 cut(s)	175, 388, 438
Cfr9I	CCCGGG	1 cut(s)	838
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	250, 964
CviAII	CATG	8 cut(s)	385, 392, 526, 662, 854, 887, 1109, 1124
CviQI	GTAC	2 cut(s)	250, 964
DinI	GGCGCC	1 cut(s)	1106
DpnI	GATC	7 cut(s)	116, 150, 383, 740, 794, 800, 1151
DpnII	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
Eco47I	GGWCC	3 cut(s)	175, 388, 438
Eco57I	CTGAAG	2 cut(s)	675, 917
Eco88I	CYCGRG	2 cut(s)	464, 838
EcoRI	GAATTC	1 cut(s)	97
EgeI	GGCGCC	1 cut(s)	1106
EheI	GGCGCC	1 cut(s)	1106
FaeI	CATG	8 cut(s)	388, 395, 529, 665, 857, 890, 1112, 1127
FaqI	GGGAC	2 cut(s)	465, 580
FatI	CATG	8 cut(s)	384, 391, 525, 661, 853, 886, 1108, 1123
FauNDI	CATATG	2 cut(s)	238, 789
FbaI	TGATCA	2 cut(s)	381, 792
Fnu4HI	GCNGC	2 cut(s)	51, 777
FokI	GGATG	1 cut(s)	746
Fsp4HI	GCNGC	2 cut(s)	51, 777
FspBI	CTAG	4 cut(s)	416, 624, 1133, 1200
GlaI	GCGC	3 cut(s)	369, 780, 1106
GluI	GCNGC	2 cut(s)	51, 777
GsaI	CCCAGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	1108
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	33, 839
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	3 cut(s)	370, 781, 1107
Hin1I	GRCGYC	1 cut(s)	1105
Hin1II	CATG	8 cut(s)	388, 395, 529, 665, 857, 890, 1112, 1127
Hin6I	GCGC	3 cut(s)	368, 779, 1105
HinP1I	GCGC	3 cut(s)	368, 779, 1105
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	5 cut(s)	160, 279, 296, 542, 1022
HpaI	GTTAAC	1 cut(s)	723
HpaII	CCGG	2 cut(s)	33, 839
Hpy166II	GTNNAC	4 cut(s)	723, 765, 988, 1120
Hpy188I	TCNGA	6 cut(s)	41, 356, 589, 651, 879, 957
Hpy8I	GTNNAC	4 cut(s)	723, 765, 988, 1120
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	1073
HpyCH4III	ACNGT	3 cut(s)	514, 992, 1012
HpyCH4IV	ACGT	4 cut(s)	21, 423, 518, 1209
HpyCH4V	TGCA	2 cut(s)	172, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpySE526I	ACGT	4 cut(s)	21, 423, 518, 1209
Hsp92I	GRCGYC	1 cut(s)	1105
Hsp92II	CATG	8 cut(s)	388, 395, 529, 665, 857, 890, 1112, 1127
HspAI	GCGC	3 cut(s)	368, 779, 1105
KasI	GGCGCC	1 cut(s)	1104
Ksp22I	TGATCA	2 cut(s)	381, 792
KspAI	GTTAAC	1 cut(s)	723
Kzo9I	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
LmnI	GCTCC	2 cut(s)	209, 1078
LpnPI	CCDG	9 cut(s)	39, 46, 102, 149, 158, 235, 600, 852, 1132
Lsp1109I	GCAGC	1 cut(s)	763
LweI	GCATC	4 cut(s)	118, 355, 687, 1126
MaeI	CTAG	4 cut(s)	416, 624, 1133, 1200
MaeII	ACGT	4 cut(s)	21, 423, 518, 1209
MaeIII	GTNAC	2 cut(s)	514, 1066
MalI	GATC	7 cut(s)	116, 150, 383, 740, 794, 800, 1151
MboI	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
MboII	GAAGA	3 cut(s)	16, 508, 910
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	2 cut(s)	114, 148
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	7 cut(s)	97, 573, 706, 714, 817, 958, 1035
Mly113I	GGCGCC	1 cut(s)	1105
MlyI	GAGTC	2 cut(s)	288, 1016
MmeI	TCCRAC	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	8 cut(s)	182, 636, 722, 846, 858, 867, 1038, 1190
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	33, 839
MspR9I	CCNGG	2 cut(s)	839, 840
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	619
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	1105
NciI	CCSGG	2 cut(s)	839, 840
NdeI	CATATG	2 cut(s)	238, 789
NdeII	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
NlaIII	CATG	8 cut(s)	388, 395, 529, 665, 857, 890, 1112, 1127
NlaIV	GGNNCC	2 cut(s)	330, 1106
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	661
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	160, 296, 542
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	2 cut(s)	52, 778
PleI	GAGTC	2 cut(s)	287, 1016
PluTI	GGCGCC	1 cut(s)	1108
PpsI	GAGTC	2 cut(s)	287, 1016
Ppu21I	YACGTR	1 cut(s)	1210
PshBI	ATTAAT	1 cut(s)	1038
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	330, 1106
PspPI	GGNCC	3 cut(s)	175, 388, 438
PspXI	VCTCGAGB	1 cut(s)	464
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PsuI	RGATCY	2 cut(s)	114, 148
RsaI	GTAC	2 cut(s)	251, 965
RsaNI	GTAC	2 cut(s)	250, 964
SaqAI	TTAA	8 cut(s)	182, 636, 722, 846, 858, 867, 1038, 1190
SatI	GCNGC	2 cut(s)	51, 777
Sau3AI	GATC	7 cut(s)	114, 148, 381, 738, 792, 798, 1149
Sau96I	GGNCC	3 cut(s)	175, 388, 438
SchI	GAGTC	2 cut(s)	288, 1016
ScrFI	CCNGG	2 cut(s)	839, 840
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	4 cut(s)	118, 355, 687, 1126
SfcI	CTRYAG	1 cut(s)	782
SfoI	GGCGCC	1 cut(s)	1106
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	3 cut(s)	175, 388, 438
SlaI	CTCGAG	1 cut(s)	464
SmaI	CCCGGG	1 cut(s)	840
SmlI	CTYRAG	3 cut(s)	110, 449, 464
SmoI	CTYRAG	3 cut(s)	110, 449, 464
Sse9I	AATT	7 cut(s)	97, 573, 706, 714, 817, 958, 1035
SsiI	CCGC	3 cut(s)	51, 441, 1139
SspDI	GGCGCC	1 cut(s)	1104
SspI	AATATT	2 cut(s)	286, 862
SspMI	CTAG	4 cut(s)	416, 624, 1133, 1200
StyD4I	CCNGG	2 cut(s)	837, 838
TaaI	ACNGT	3 cut(s)	514, 992, 1012
TaiI	ACGT	4 cut(s)	24, 426, 521, 1212
TaqI	TCGA	4 cut(s)	126, 144, 465, 1060
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	7 cut(s)	97, 573, 706, 714, 817, 958, 1035
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	160, 296, 542
Tru1I	TTAA	8 cut(s)	182, 636, 722, 846, 858, 867, 1038, 1190
Tru9I	TTAA	8 cut(s)	182, 636, 722, 846, 858, 867, 1038, 1190
TscAI	CASTG	2 cut(s)	619, 1017
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	776
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	5 cut(s)	17, 255, 566, 650, 906
TspGWI	ACGGA	1 cut(s)	584
TspMI	CCCGGG	1 cut(s)	838
TspRI	CASTG	2 cut(s)	619, 1017
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	3 cut(s)	175, 388, 438
VspI	ATTAAT	1 cut(s)	1038
XapI	RAATTY	3 cut(s)	97, 573, 958
XbaI	TCTAGA	2 cut(s)	415, 1199
XceI	RCATGY	1 cut(s)	857
XhoI	CTCGAG	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	4 cut(s)	416, 624, 1133, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.