Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

220836 .. 225329

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgttggtctggcccagattggagctactttccctctcaactgatttccctctcaactcaaaccctagcctctcctcctcttgtctcacagctcgcctgaggctactgaatgcgatcatggccgacgtcgccaccttgtcgtgtgctcgttgcagcaaacccgccaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctggatacagaaagggttcagacttgaattctattttcacactaaccctttctttgaaaaccctgtcttgaccaagacgtatcacatgaatgatgaagatgaattctttctagaatctgcaatagggacagagattgcatggcatccagaaaaatgcttgacacagaagctcaataagatatttgggaatggatcaaagaaagctaagccaatgactaataaaagcttctttggctttttcagtccacttgaaatcccaaagaacctaaaagatatgaaagatacaattgaggtcataaatctgaaagacgagatggaaagggattgtttctttgggttgaccattcgagatgagatcatcccacgtgccgtttcatgggagtgtgttggaagtctaagattgatccagattagcttggtagaaatgccagagtgtagcaagaaaaagttgatggctttgaccactaatgtgatgagagatgatagtgataaggcccttggattacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

243

Amino Acids

27.75

Weight (kDa)

6.82

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AciI	CCGC	2 cut(s)	162, 216
AclWI	GGATC	2 cut(s)	421, 619
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	248, 323
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	222, 597
AgsI	TTSAA	4 cut(s)	196, 248, 278, 473
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	7 cut(s)	25, 92, 199, 391, 425, 447, 636
AluI	AGCT	7 cut(s)	25, 92, 199, 391, 425, 447, 636
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	421, 619
AoxI	GGCC	3 cut(s)	11, 120, 714
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	248, 323
Asp700I	GAANNNNTTC	2 cut(s)	236, 327
AspS9I	GGNCC	2 cut(s)	12, 715
AxyI	CCTNAGG	1 cut(s)	98
BauI	CACGAG	1 cut(s)	204
BbrPI	CACGTG	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	529, 667
BceAI	ACGGC	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	66, 332
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	2 cut(s)	154, 216
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	2 cut(s)	155, 217
BmgT120I	GGNCC	2 cut(s)	12, 715
BmsI	GCATC	2 cut(s)	202, 373
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 597
Bse21I	CCTNAGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	2 cut(s)	364, 579
BseLI	CCNNNNNNNGG	2 cut(s)	222, 597
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	64, 67
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	3 cut(s)	13, 122, 716
BsiHKAI	GWGCWC	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	162, 361
BslI	CCNNNNNNNGG	2 cut(s)	222, 597
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	162, 361
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	13, 122, 716
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	114, 413, 576, 624
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	162, 216
BspANI	GGCC	3 cut(s)	13, 122, 716
BspCNI	CTCAG	1 cut(s)	90
BspPI	GGATC	2 cut(s)	421, 619
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	4 cut(s)	114, 413, 576, 624
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	718
Bst2BI	CACGAG	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	98, 426, 617
BstF5I	GGATG	2 cut(s)	364, 579
BstKTI	GATC	4 cut(s)	117, 416, 579, 627
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	114, 413, 576, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 128, 453
BstV1I	GCAGC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	13, 122, 716
BtsCI	GGATG	2 cut(s)	364, 579
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	12, 715
CviAII	CATG	4 cut(s)	118, 307, 360, 597
DdeI	CTNAG	3 cut(s)	98, 426, 617
DpnI	GATC	4 cut(s)	116, 415, 578, 626
DpnII	GATC	4 cut(s)	114, 413, 576, 624
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	587
Eco81I	CCTNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRI	GAATTC	2 cut(s)	248, 323
EcoT14I	CCWWGG	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	4 cut(s)	121, 310, 363, 600
FaiI	YATR	6 cut(s)	119, 308, 361, 497, 518, 598
FaqI	GGGAC	2 cut(s)	162, 361
FatI	CATG	4 cut(s)	117, 306, 359, 596
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	154, 216
FokI	GGATG	2 cut(s)	351, 566
Fsp4HI	GCNGC	2 cut(s)	154, 216
FspBI	CTAG	2 cut(s)	66, 332
GluI	GCNGC	2 cut(s)	154, 216
HaeIII	GGCC	3 cut(s)	13, 122, 716
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	121, 310, 363, 600
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HindIII	AAGCTT	2 cut(s)	197, 445
HinfI	GANTC	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	467, 561
Hpy188I	TCNGA	2 cut(s)	242, 525
Hpy188III	TCNNGA	7 cut(s)	206, 223, 289, 332, 368, 569, 628
Hpy8I	GTNNAC	2 cut(s)	467, 561
Hpy99I	CGWCG	2 cut(s)	128, 131
HpyCH4IV	ACGT	3 cut(s)	126, 299, 586
HpyCH4V	TGCA	3 cut(s)	153, 341, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 128, 453
HpyF3I	CTNAG	3 cut(s)	98, 426, 617
HpySE526I	ACGT	3 cut(s)	126, 299, 586
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	121, 310, 363, 600
Kzo9I	GATC	4 cut(s)	114, 413, 576, 624
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	28, 110, 208, 297, 381, 641, 663
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	202, 373
MaeI	CTAG	2 cut(s)	66, 332
MaeII	ACGT	3 cut(s)	126, 299, 586
MalI	GATC	4 cut(s)	116, 415, 578, 626
MboI	GATC	4 cut(s)	114, 413, 576, 624
MboII	GAAGA	3 cut(s)	161, 221, 329
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	4 cut(s)	191, 248, 323, 507
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	8 cut(s)	44, 60, 80, 85, 88, 93, 213, 505
MroXI	GAANNNNTTC	2 cut(s)	236, 327
MslI	CAYNNNNRTG	3 cut(s)	309, 601, 689
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	119, 128, 453
NdeII	GATC	4 cut(s)	114, 413, 576, 624
NlaIII	CATG	4 cut(s)	121, 310, 363, 600
OliI	CACNNNNGTG	1 cut(s)	689
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	236, 327
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	155, 217
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
Ppu21I	YACGTR	1 cut(s)	587
PspCI	CACGTG	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	12, 715
RseI	CAYNNNNRTG	3 cut(s)	309, 601, 689
SatI	GCNGC	2 cut(s)	154, 216
Sau3AI	GATC	4 cut(s)	114, 413, 576, 624
Sau96I	GGNCC	2 cut(s)	12, 715
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	202, 373
SmiMI	CAYNNNNRTG	3 cut(s)	309, 601, 689
Sse9I	AATT	4 cut(s)	191, 248, 323, 507
SsiI	CCGC	2 cut(s)	162, 216
SspMI	CTAG	2 cut(s)	66, 332
StyI	CCWWGG	1 cut(s)	718
TaiI	ACGT	3 cut(s)	129, 302, 589
TaqI	TCGA	1 cut(s)	568
TasI	AATT	4 cut(s)	191, 248, 323, 507
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	5 cut(s)	323, 330, 336, 512, 585
TspRI	CASTG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	248, 323
XbaI	TCTAGA	1 cut(s)	331
XmnI	GAANNNNTTC	2 cut(s)	236, 327
XspI	CTAG	2 cut(s)	66, 332
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.