Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

6697352 .. 6699887

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGGAACGACAAGGATAACGTCAAGGTTTCTGATCTTGGATCTTCTGCTGTTGGTAAAGGAGAGCTTCGACCACGCTTTCTTAATCCTGTCAAGCACTCCTATCTCCTCAAGATCCTTTCACTCGATGCCAGAAATCGCGTTGAGGAACTTATGGAGATTCAGGAAGTGCATGACCGATTAAAGGCAGAGTTTTACAAGGAGAGGGGAGCACTTGAAGCCAAATATGAGAAATCATATGAACCTCTGTACGAACAGGGAGTGCCTAATTTTTGGCTCTTTGCTTTCAGAGGCAATGATGTGCTAAATGATATGATCATGGACCATGACGAAAGAGTTCTCAAACATCTTGAAAACGTCAAGTGGGTCAGGACAGATAACCTTAGGGGTTTCAAACTCGAATTCTACTTTCGTCCCAACCCTTTCTTTAAGAACTCTATCTTGTCCATGACATATCACATGATTGATGACGATGATTCCATTATAGAGAAAGTAATAGGACTAACCATTCGGGATGAGATAATTCCTCGTGCTATATTATGGTTTACGGGGGAGGCTGCGCTACAGAAGATGACAAAGATCACAACAGAGCATTCCTGTTTCCTTGATAGCCTATCTCCGGGTGTTAAAAAGCATGTTAATATTCTTGAAAACATTCAGACTGTTGTTTCATTACGTGTCCGATTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

230

Amino Acids

27.0

Weight (kDa)

6.67

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	46 - 86	3.6e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	86 - 160	1.6e-24	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	2 cut(s)	49, 109
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	184, 619
AflIII	ACRYGT	1 cut(s)	676
AgsI	TTSAA	4 cut(s)	218, 353, 394, 650
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	49, 109
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
Asp700I	GAANNNNTTC	2 cut(s)	336, 654
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	383
BauI	CACGAG	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	621
BfaI	CTAG	1 cut(s)	691
BfmI	CTRYAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 619
Bse21I	CCTNAGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	184, 619
BseMI	GCAATG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	184, 619
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	5 cut(s)	34, 41, 114, 315, 579
BspFNI	CGCG	1 cut(s)	141
BspPI	GGATC	2 cut(s)	49, 109
BsrDI	GCAATG	1 cut(s)	301
BssMI	GATC	5 cut(s)	34, 41, 114, 315, 579
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	677
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	37, 44, 117, 318, 582
BstMBI	GATC	5 cut(s)	34, 41, 114, 315, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	2 cut(s)	41, 114
BstYI	RGATCY	2 cut(s)	41, 114
Bsu36I	CCTNAGG	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	520
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	6 cut(s)	173, 319, 326, 448, 460, 635
CviJI	RGCY	5 cut(s)	67, 221, 277, 557, 612
CviKI_1	RGCY	5 cut(s)	67, 221, 277, 557, 612
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	5 cut(s)	36, 43, 116, 317, 581
DpnII	GATC	5 cut(s)	34, 41, 114, 315, 579
Eco47I	GGWCC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	401
FaeI	CATG	6 cut(s)	176, 322, 329, 451, 463, 638
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	6 cut(s)	172, 318, 325, 447, 459, 634
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	691
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	558
HapII	CCGG	1 cut(s)	620
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	176, 322, 329, 451, 463, 638
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	2 cut(s)	160, 476
HpaII	CCGG	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	4 cut(s)	34, 290, 660, 683
Hpy188III	TCNNGA	6 cut(s)	112, 164, 350, 370, 512, 647
Hpy8I	GTNNAC	1 cut(s)	546
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	3 cut(s)	21, 357, 676
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	3 cut(s)	21, 357, 676
Hsp92II	CATG	6 cut(s)	176, 322, 329, 451, 463, 638
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	5 cut(s)	34, 41, 114, 315, 579
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	102, 145, 149, 242, 355, 610, 633
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	691
MaeII	ACGT	3 cut(s)	21, 357, 676
MalI	GATC	5 cut(s)	36, 43, 116, 317, 581
MboI	GATC	5 cut(s)	34, 41, 114, 315, 579
MboII	GAAGA	2 cut(s)	36, 580
MflI	RGATCY	2 cut(s)	41, 114
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	268, 401, 522
MnlI	CCTC	7 cut(s)	119, 139, 198, 255, 284, 537, 547
MroXI	GAANNNNTTC	2 cut(s)	336, 654
MseI	TTAA	5 cut(s)	84, 182, 429, 627, 639
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	592
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	34, 41, 114, 315, 579
NlaIII	CATG	6 cut(s)	176, 322, 329, 451, 463, 638
NspI	RCATGY	1 cut(s)	638
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	336, 654
PfeI	GAWTC	2 cut(s)	160, 476
PkrI	GCNGC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	677
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	41, 114
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	5 cut(s)	84, 182, 429, 627, 639
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	5 cut(s)	34, 41, 114, 315, 579
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	24, 30, 69, 247, 360, 384, 679
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	268, 401, 522
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	1 cut(s)	691
StyD4I	CCNGG	1 cut(s)	619
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	3 cut(s)	24, 360, 679
TaqI	TCGA	3 cut(s)	70, 126, 399
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	268, 401, 522
TfiI	GAWTC	2 cut(s)	160, 476
Tru1I	TTAA	5 cut(s)	84, 182, 429, 627, 639
Tru9I	TTAA	5 cut(s)	84, 182, 429, 627, 639
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	255, 660
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	638
XmnI	GAANNNNTTC	2 cut(s)	336, 654
XspI	CTAG	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.