Rh1AG436800

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001465
Physical Location & Seq
Reverse (-)
66093569 .. 66105560
11992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG436800.1

Sequence Viewer

Length: 1602 bp
ATGTTGATCTGGTGCCGGATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCAATTGAAGGGGAGAAAGGAAGAAACAGAAGAAGAAGGGGGAGACAGGAAGGACAGAAGAGACAGAGAAATCCAAAAGAGGAGAAGAACTGCTATACTTCACATATTCAAGATAATTTAGCTGCGAACTTCAGCAGGGAGCTGGCTGACTATATTATTTACATCATAGATGTATCTGGTGGTGATAAAATTCCACGAAAAGGTGGCCCTGGAATCACTCAAGCTGACCTTCTGGTGATAAACAAGACTGACCTTGCACAAGCAGTTGGAGCTGATTTTGCAGTGATGGAGTGTGATGCACTTCGAATGCGAGATGGAGGGCCATTTGTCTTTGCTCAGCACAATGAACTCCACCAGATCTCACCGGATGCCCGAAATCGCATTCAGTATCTTATACAGATACAGAAGGACCATGATGAATTGAAGGCACAGTTTTACAAGGATCGAGGCGCACTTGAACTTAAATATGAGGAACTCTATCAGCCTCTGTACGACAAGATTGAACACTATGATGAAGGAGCTCTCAAACATCTTGAAAACATCAGGTGGCTTAGGACAGAAAACCTTAAGGTTTTCAAACTGGAGTTCTACTTTCGACGAAACCCCTACTTCAAAAACTCTGTTTTGACCCTGACATATCATATGCTTGATGAAGATGAGTCCATTATAGATACAATAATAGGGACGGAAATTGAGTGGTATTCAAAAAATCGTTTGACGAAACGTAGAAGTTTCTTCGACCTTTTTAGTCCACCTGAAGTCCATAATAACTATAAAGACCGAGTACTCAAATATATGTTGCAAGGAATTTATTTCATTGGCTCCATCATTCGGGATGATATAATCTCTCGTGCTGTATTATGGTTTACGGGGGAGGCTTCGCTAGAGCAGATGATAGAGATCACAACAAGGCATTCATGTTTCCTCAATAACCTATCACTGGATGTCCAAAAGCATGTTGACCATCTCAGAAACATTCAGAGAGATCATGATGGATTAAAGGCACAGTTTTACCGGGAAAGAGCAGAACTTGAAGCCAAGTATCAGAAATTTTATAATAAAATTTACAATGAGCGATGTGGGATTGTAAATGGTGTTGTTGAAGCTGAAAAAGTGATTAATGACTCTGAAGCAGTAAATCAAGAGGTTGCCCCGGAAGACATCAAATGGTGGAGAAAAGATGACTCTAAGGGGTTCATACTTGAGTTTTGCTTTAACAACAATCCTTTCTTAAAAAACTCTGTTTTGACCAAGACATATCAGTTTCTTGATGAAGATGAAACCATTCTATACAAAGCAATAGGGACAGAGATCGAATGGTATCCGGAATACTGTTTGACTAAAGAACGTGAAAGTTTCTTCAACTTTTTCTATCCCCTTCAAATTGATGAAGATGCTGAGATGGAACTCATAGAAGATATGAGACGAGATTATTACATTGGGTCAACCATTCGCAATCATATCATCCCTCGTGCTGTTTTATGGTATTTAGGGGCGGCTGTCCCAGGAGATAAGATTTACCTAAATAAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

533

Amino Acids

63.0

Weight (kDa)

5.69

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cobW PF02492 66 - 131 1.3e-09 CobW/HypB/UreG, nucleotide-binding domain
NAP PF00956 147 - 188 3.5e-06 Nucleosome assembly protein (NAP)
NAP PF00956 188 - 263 3.4e-18 Nucleosome assembly protein (NAP)
NAP PF00956 261 - 313 9.5e-09 Nucleosome assembly protein (NAP)
NAP PF00956 340 - 393 5.4e-10 Nucleosome assembly protein (NAP)
NAP PF00956 407 - 470 2.9e-12 Nucleosome assembly protein (NAP)
NAP PF00956 469 - 519 7e-12 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 1387
AciI CCGC 1 cut(s) 1559
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 5 cut(s) 25, 252, 870, 1112, 1125
AcuI CTGAAG 3 cut(s) 178, 840, 1212
AfaI GTAC 2 cut(s) 554, 849
AfiI CCNNNNNNNGG 3 cut(s) 263, 894, 1003
AflII CTTAAG 1 cut(s) 629
AjnI CCWGG 2 cut(s) 271, 1567
AluBI AGCT 6 cut(s) 185, 205, 287, 335, 584, 1169
AluI AGCT 6 cut(s) 185, 205, 287, 335, 584, 1169
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 3 cut(s) 100, 118, 1480
AlwI GGATC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 550
Aor13HI TCCGGA 1 cut(s) 1387
AoxI GGCC 2 cut(s) 268, 383
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 5 cut(s) 25, 252, 870, 1112, 1125
AseI ATTAAT 1 cut(s) 1182
Asp700I GAANNNNTTC 1 cut(s) 1347
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 3 cut(s) 269, 383, 472
AsuC2I CCSGG 2 cut(s) 1079, 1217
AsuHPI GGTGA 3 cut(s) 257, 310, 417
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 586
BauI CACGAG 2 cut(s) 912, 1533
BbsI GAAGAC 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 1 cut(s) 172
BccI CCATC 6 cut(s) 343, 371, 896, 1035, 1049, 1459
BciT130I CCWGG 2 cut(s) 273, 1569
BciVI GTATCC 1 cut(s) 1395
BcnI CCSGG 2 cut(s) 1079, 1217
BcoDI GTCTC 3 cut(s) 100, 118, 1480
BfaI CTAG 1 cut(s) 947
BfrI CTTAAG 1 cut(s) 629
BfuI GTATCC 1 cut(s) 1395
BglII AGATCT 1 cut(s) 420
BisI GCNGC 2 cut(s) 186, 1560
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 2 cut(s) 187, 1561
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 4 cut(s) 273, 1079, 1217, 1569
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 269, 383, 472
BmiI GGNNCC 2 cut(s) 14, 886
BmrFI CCNGG 4 cut(s) 273, 1079, 1217, 1569
BmsI GCATC 3 cut(s) 349, 421, 1447
BpiI GAAGAC 1 cut(s) 1227
BpmI CTGGAG 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 614
Bpu1102I GCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 267, 1286
BpuMI CCSGG 2 cut(s) 1079, 1217
BsaBI GATNNNNATC 1 cut(s) 962
BsaJI CCNNGG 3 cut(s) 271, 1215, 1567
BsaWI WCCGGW 2 cut(s) 427, 1387
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 894, 1003
Bse1I ACTGG 2 cut(s) 648, 1008
Bse8I GATNNNNATC 1 cut(s) 962
BseAI TCCGGA 1 cut(s) 1387
BseBI CCWGG 2 cut(s) 273, 1569
BseDI CCNNGG 3 cut(s) 271, 1215, 1567
BseGI GGATG 5 cut(s) 64, 436, 904, 1012, 1527
BseJI GATNNNNATC 1 cut(s) 962
BseLI CCNNNNNNNGG 3 cut(s) 263, 894, 1003
BseMII CTCAG 3 cut(s) 413, 1045, 1452
BseNI ACTGG 2 cut(s) 648, 1008
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 270, 385
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 5 cut(s) 16, 428, 1078, 1217, 1388
BslFI GGGAC 3 cut(s) 760, 1381, 1550
BslI CCNNNNNNNGG 3 cut(s) 263, 894, 1003
BsmAI GTCTC 3 cut(s) 100, 118, 1480
BsmBI CGTCTC 1 cut(s) 1480
BsmFI GGGAC 3 cut(s) 760, 1381, 1550
BsmI GAATGC 3 cut(s) 375, 444, 976
BsnI GGCC 2 cut(s) 270, 385
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 586
Bsp13I TCCGGA 1 cut(s) 1387
Bsp143I GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 1 cut(s) 1559
BspANI GGCC 2 cut(s) 270, 385
BspCNI CTCAG 3 cut(s) 412, 1044, 1453
BspEI TCCGGA 1 cut(s) 1387
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 14, 886
BspPI GGATC 1 cut(s) 513
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 629
BsrI ACTGG 2 cut(s) 648, 1008
BssECI CCNNGG 3 cut(s) 271, 1215, 1567
BssMI GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
BssSI CACGAG 2 cut(s) 912, 1533
Bst2BI CACGAG 2 cut(s) 912, 1533
Bst2UI CCWGG 2 cut(s) 273, 1569
Bst4CI ACNGT 3 cut(s) 495, 1071, 1397
Bst6I CTCTTC 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 5 cut(s) 399, 614, 1031, 1251, 1461
BstF5I GGATG 5 cut(s) 64, 436, 904, 1012, 1527
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 6 cut(s) 9, 423, 508, 966, 1051, 1377
BstMAI GTCTC 3 cut(s) 100, 118, 1480
BstMBI GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
BstMWI GCNNNNNNNGC 2 cut(s) 332, 341
BstNI CCWGG 2 cut(s) 273, 1569
BstNSI RCATGY 1 cut(s) 1022
BstSCI CCNGG 4 cut(s) 271, 1077, 1215, 1567
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuI GTATCC 1 cut(s) 1395
BsuRI GGCC 2 cut(s) 270, 385
BtgZI GCGATG 1 cut(s) 1153
BtsCI GGATG 5 cut(s) 64, 436, 904, 1012, 1527
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 1001
Cac8I GCNNGC 1 cut(s) 207
CaiI CAGNNNCTG 1 cut(s) 550
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 3 cut(s) 269, 383, 472
Csp6I GTAC 2 cut(s) 553, 848
CviAII CATG 4 cut(s) 476, 981, 1019, 1052
CviQI GTAC 2 cut(s) 553, 848
DdeI CTNAG 5 cut(s) 399, 614, 1031, 1251, 1461
DpnI GATC 6 cut(s) 8, 422, 507, 965, 1050, 1376
DpnII GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 584
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 3 cut(s) 178, 840, 1212
EcoICRI GAGCTC 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 271, 1567
EcoT38I GRGCYC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 1480
FaeI CATG 4 cut(s) 479, 984, 1022, 1055
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 3 cut(s) 760, 1381, 1550
FatI CATG 4 cut(s) 475, 980, 1018, 1051
FauNDI CATATG 1 cut(s) 705
Fnu4HI GCNGC 2 cut(s) 186, 1560
FokI GGATG 5 cut(s) 71, 443, 911, 1019, 1514
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 2 cut(s) 186, 1560
FspBI CTAG 1 cut(s) 947
GlaI GCGC 1 cut(s) 514
GluI GCNGC 2 cut(s) 186, 1560
GsuI CTGGAG 1 cut(s) 665
HaeIII GGCC 2 cut(s) 270, 385
HapII CCGG 5 cut(s) 16, 428, 1078, 1217, 1388
HhaI GCGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 479, 984, 1022, 1055
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 2 cut(s) 1024, 1509
HindII GTYRAC 2 cut(s) 1024, 1509
HinfI GANTC 6 cut(s) 19, 276, 722, 1187, 1247, 1595
HpaII CCGG 5 cut(s) 16, 428, 1078, 1217, 1388
HphI GGTGA 3 cut(s) 257, 310, 417
Hpy166II GTNNAC 4 cut(s) 815, 930, 1024, 1509
Hpy188I TCNGA 4 cut(s) 1034, 1044, 1110, 1192
Hpy188III TCNNGA 8 cut(s) 173, 596, 896, 1052, 1205, 1331, 1388, 1599
Hpy8I GTNNAC 4 cut(s) 815, 930, 1024, 1509
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 8 cut(s) 65, 93, 107, 302, 463, 481, 572, 1451
HpyCH4III ACNGT 3 cut(s) 495, 1071, 1397
HpyCH4IV ACGT 2 cut(s) 787, 1411
HpyCH4V TGCA 4 cut(s) 320, 344, 362, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 341
HpyF3I CTNAG 5 cut(s) 399, 614, 1031, 1251, 1461
HpySE526I ACGT 2 cut(s) 787, 1411
Hsp92II CATG 4 cut(s) 479, 984, 1022, 1055
HspAI GCGC 1 cut(s) 513
Kpn2I TCCGGA 1 cut(s) 1387
Kzo9I GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
LmnI GCTCC 4 cut(s) 202, 332, 581, 890
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 349, 421, 1447
MaeI CTAG 1 cut(s) 947
MaeII ACGT 2 cut(s) 787, 1411
MalI GATC 6 cut(s) 8, 422, 507, 965, 1050, 1376
MboI GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 586
MlyI GAGTC 3 cut(s) 731, 1181, 1241
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 9 cut(s) 136, 374, 503, 526, 558, 931, 998, 1201, 1542
MroI TCCGGA 1 cut(s) 1387
MroXI GAANNNNTTC 1 cut(s) 1347
MseI TTAA 6 cut(s) 525, 630, 1061, 1182, 1278, 1295
MslI CAYNNNNRTG 1 cut(s) 573
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 5 cut(s) 16, 428, 1078, 1217, 1388
MspR9I CCNGG 4 cut(s) 273, 1079, 1217, 1569
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 3 cut(s) 375, 444, 976
MvaI CCWGG 2 cut(s) 273, 1569
MwoI GCNNNNNNNGC 2 cut(s) 332, 341
NciI CCSGG 2 cut(s) 1079, 1217
NdeI CATATG 1 cut(s) 705
NdeII GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
NlaIII CATG 4 cut(s) 479, 984, 1022, 1055
NlaIV GGNNCC 2 cut(s) 14, 886
NspI RCATGY 1 cut(s) 1022
NspV TTCGAA 1 cut(s) 367
PagI TCATGA 1 cut(s) 1051
PctI GAATGC 3 cut(s) 375, 444, 976
PdmI GAANNNNTTC 1 cut(s) 1347
PfeI GAWTC 3 cut(s) 19, 276, 1595
PkrI GCNGC 2 cut(s) 187, 1561
PleI GAGTC 3 cut(s) 730, 1181, 1241
PpsI GAGTC 3 cut(s) 730, 1181, 1241
PshBI ATTAAT 1 cut(s) 1182
PsiI TTATAA 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 271, 1567
PspGI CCWGG 2 cut(s) 271, 1567
PspN4I GGNNCC 2 cut(s) 14, 886
PspPI GGNCC 3 cut(s) 269, 383, 472
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 2 cut(s) 554, 849
RsaNI GTAC 2 cut(s) 553, 848
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 6 cut(s) 525, 630, 1061, 1182, 1278, 1295
SatI GCNGC 2 cut(s) 186, 1560
Sau3AI GATC 6 cut(s) 6, 420, 505, 963, 1048, 1374
Sau96I GGNCC 3 cut(s) 269, 383, 472
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 3 cut(s) 731, 1181, 1241
ScrFI CCNGG 4 cut(s) 273, 1079, 1217, 1569
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 3 cut(s) 349, 421, 1447
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 3 cut(s) 282, 629, 1265
SmoI CTYRAG 3 cut(s) 282, 629, 1265
SsiI CCGC 1 cut(s) 1559
SspMI CTAG 1 cut(s) 947
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 4 cut(s) 271, 1077, 1215, 1567
TaaI ACNGT 3 cut(s) 495, 1071, 1397
TaiI ACGT 2 cut(s) 790, 1414
TaqI TCGA 5 cut(s) 367, 508, 658, 801, 1377
TaqII GACCGA 1 cut(s) 858
TatI WGTACW 1 cut(s) 847
TauI GCSGC 1 cut(s) 1562
TfiI GAWTC 3 cut(s) 19, 276, 1595
Tru1I TTAA 6 cut(s) 525, 630, 1061, 1182, 1278, 1295
Tru9I TTAA 6 cut(s) 525, 630, 1061, 1182, 1278, 1295
TscAI CASTG 2 cut(s) 351, 1008
TseI GCWGC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 764
TspRI CASTG 2 cut(s) 351, 1008
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 472
VspI ATTAAT 1 cut(s) 1182
XapI RAATTY 5 cut(s) 25, 252, 870, 1112, 1125
XceI RCATGY 1 cut(s) 1022
XmnI GAANNNNTTC 1 cut(s) 1347
XspI CTAG 1 cut(s) 947
ZrmI AGTACT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.