Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

7763359 .. 7767314

Gene Structure 3956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGGAAAGGGGAGCTTCGACCACGCCTTGTCAATCCTGTCAAGAAGATGACAAAGATAACAACAGAGCATTCCTGTTTCCTTGATAGCCTATCCCCAGGTGTTAAAAAGCATGTTAATATTCTTAAAAACATTCAGAGCGACCATGATGAACTGAAGAAAATGTTCTACAAGGAAAGAGCAAACCTTGAAGCCAACTATCAAAACTTGTTTAAGAATTTGTACGATAAGCGATGCGATATTGTGAATGGTGTTGTTCAAGCAAAAAAAGTGTCTAATGACTCCGAAGCATCAATTAATCAAGAGGATATTACAAATCAAGATGTTAAGGCTCCCGAAGCAAAAGGAGTACCTAACTTTTGGCGCCATGCTTTGGTAAACCATGAGTTGCTAGACGCGGAGATTACGACTCCGGATGGACGAGCTCTCATGTATCTTAAAGGCATCAAATGCTCAAGGATAGATAGTCCTAAGGGGTTTAAACTTGAGTTCTTCTTTAACAAAAATCCTTTCTTTAAAAACTCTGTCTTGATCAAGACATATGAATTTCTAGATGAAGATGAGGCCATTGTACACAAAGTAACAGGGTTGAAGATCGAATGGTATCCCAAAAACTGCTTGACATCGAAGTCTAAGAAGGAATTGAATAGTGTTGACATAAGACCGGAACAATGTGAAAGTTTCTTCAACTTTTTTGATCCACTTCCAATTGAGGAAAAAGCTGGGAGGGTGCGCAGGGAGACATGGGCATCGATTGGGGAGAGTCAGAAGATGAAGAAGGGGAAGGCTGTCCGGGGAGATATGGAGGTTGATTTCAAAGACTCGGAAGAAATTGACGAATATGAAGACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

285

Amino Acids

32.84

Weight (kDa)

6.63

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	38 - 278	3.1e-50	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
Acc16I	TGCGCA	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	363
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	2 cut(s)	217, 545
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	3 cut(s)	224, 351, 573
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	6 cut(s)	191, 260, 592, 646, 688, 817
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	3 cut(s)	16, 425, 722
AluI	AGCT	3 cut(s)	16, 425, 722
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	1 cut(s)	564
ApoI	RAATTY	2 cut(s)	217, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	366, 735
AsuC2I	CCSGG	1 cut(s)	794
AxyI	CCTNAGG	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	427
BccI	CCATC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	2 cut(s)	392, 551
BfoI	RGCGCY	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	99, 794
BmiI	GGNNCC	2 cut(s)	333, 365
BmrFI	CCNGG	2 cut(s)	99, 794
BmsI	GCATC	4 cut(s)	224, 299, 453, 758
BpuEI	CTTGAG	2 cut(s)	439, 506
BpuMI	CCSGG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	97, 793
BsaWI	WCCGGW	2 cut(s)	412, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse21I	CCTNAGG	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	752
BseDI	CCNNGG	2 cut(s)	97, 793
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	363
BshVI	ATCGAT	1 cut(s)	752
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	413, 665, 793
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	531, 594, 697
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	566
BspDI	ATCGAT	1 cut(s)	752
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	333, 365
BspPI	GGATC	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	97, 793
BssMI	GATC	3 cut(s)	531, 594, 697
BssNI	GRCGYC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	471, 633
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	366, 735
BstKTI	GATC	3 cut(s)	534, 597, 700
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	3 cut(s)	531, 594, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 450
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	97, 792
BstUI	CGCG	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	752
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	566
BsuTUI	ATCGAT	1 cut(s)	752
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	421
CfoI	GCGC	2 cut(s)	366, 735
ClaI	ATCGAT	1 cut(s)	752
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	3 cut(s)	223, 350, 572
CviAII	CATG	6 cut(s)	113, 146, 368, 383, 430, 744
CviJI	RGCY	8 cut(s)	16, 90, 194, 332, 425, 566, 722, 788
CviKI_1	RGCY	8 cut(s)	16, 90, 194, 332, 425, 566, 722, 788
CviQI	GTAC	3 cut(s)	223, 350, 572
DdeI	CTNAG	2 cut(s)	471, 633
DinI	GGCGCC	1 cut(s)	365
DpnI	GATC	3 cut(s)	533, 596, 699
DpnII	GATC	3 cut(s)	531, 594, 697
DraI	TTTAAA	2 cut(s)	481, 517
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
Ecl136II	GAGCTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	365
EheI	GGCGCC	1 cut(s)	365
FaeI	CATG	6 cut(s)	116, 149, 371, 386, 433, 747
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	6 cut(s)	112, 145, 367, 382, 429, 743
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	531
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	2 cut(s)	392, 551
FspI	TGCGCA	1 cut(s)	734
GlaI	GCGC	2 cut(s)	365, 734
GsaI	CCCAGC	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	3 cut(s)	413, 665, 793
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	366, 735
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	6 cut(s)	116, 149, 371, 386, 433, 747
Hin6I	GCGC	2 cut(s)	364, 733
HinP1I	GCGC	2 cut(s)	364, 733
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	4 cut(s)	281, 409, 763, 821
HpaII	CCGG	3 cut(s)	413, 665, 793
Hpy166II	GTNNAC	3 cut(s)	379, 574, 655
Hpy188I	TCNGA	4 cut(s)	138, 286, 768, 826
Hpy188III	TCNNGA	8 cut(s)	43, 302, 320, 335, 413, 529, 535, 551
Hpy8I	GTNNAC	3 cut(s)	379, 574, 655
HpyAV	CCTTC	3 cut(s)	631, 772, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 450
HpyF3I	CTNAG	2 cut(s)	471, 633
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	6 cut(s)	116, 149, 371, 386, 433, 747
HspAI	GCGC	2 cut(s)	364, 733
KasI	GGCGCC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	531, 594, 697
LmnI	GCTCC	2 cut(s)	13, 337
LweI	GCATC	4 cut(s)	224, 299, 453, 758
MaeI	CTAG	2 cut(s)	392, 551
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	3 cut(s)	533, 596, 699
MboI	GATC	3 cut(s)	531, 594, 697
MboII	GAAGA	9 cut(s)	58, 169, 484, 569, 604, 676, 781, 787, 839
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	6 cut(s)	217, 294, 545, 641, 708, 831
Mly113I	GGCGCC	1 cut(s)	364
MlyI	GAGTC	4 cut(s)	275, 403, 772, 815
MnlI	CCTC	5 cut(s)	298, 556, 706, 720, 799
MroI	TCCGGA	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	164
MspI	CCGG	3 cut(s)	413, 665, 793
MspR9I	CCNGG	2 cut(s)	99, 794
MssI	GTTTAAAC	1 cut(s)	481
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	338, 450
NarI	GGCGCC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	794
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	3 cut(s)	531, 594, 697
NlaIII	CATG	6 cut(s)	116, 149, 371, 386, 433, 747
NlaIV	GGNNCC	2 cut(s)	333, 365
NsbI	TGCGCA	1 cut(s)	734
NspI	RCATGY	1 cut(s)	116
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	373
PleI	GAGTC	4 cut(s)	275, 403, 771, 815
PluTI	GGCGCC	1 cut(s)	367
PmeI	GTTTAAAC	1 cut(s)	481
PpsI	GAGTC	4 cut(s)	275, 403, 771, 815
PshBI	ATTAAT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	333, 365
RsaI	GTAC	3 cut(s)	224, 351, 573
RsaNI	GTAC	3 cut(s)	223, 350, 572
SacI	GAGCTC	1 cut(s)	427
Sau3AI	GATC	3 cut(s)	531, 594, 697
SchI	GAGTC	4 cut(s)	275, 403, 772, 815
ScrFI	CCNGG	2 cut(s)	99, 794
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	18, 103, 189, 355, 427, 724, 810
SfaNI	GCATC	4 cut(s)	224, 299, 453, 758
SfoI	GGCGCC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	454, 485
SmoI	CTYRAG	2 cut(s)	454, 485
Sse9I	AATT	6 cut(s)	217, 294, 545, 641, 708, 831
SsiI	CCGC	1 cut(s)	398
SspDI	GGCGCC	1 cut(s)	363
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	392, 551
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	97, 792
TaqI	TCGA	4 cut(s)	19, 597, 626, 752
TasI	AATT	6 cut(s)	217, 294, 545, 641, 708, 831
TatI	WGTACW	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	165, 558, 570, 788
Van91I	CCANNNNNTGG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	217, 545
XbaI	TCTAGA	1 cut(s)	550
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	392, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.