Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Reverse (-)

206579 .. 209023

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgttggtctggcccagattggagctattttccctctcaactgatttccctctcaactcaaaccctagcccctcctcctcttgtctcacagctcgcctgaggctactgaatgggatcatggctgacgttacgaccttctcgtgtgatcgttgcagcaaacccgtcaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctggacagagattgcatggcatccagaaaaatgcttgacacagaagctcaataagatatctgggaagggatcaaagaaagctaagccaatgactaataaaagcttctttggctttttcagtccacctgaaatcccaaagaacctgaaagatatgaaagatactgttgaggtcataaatctgaaagacgagatggaaagggattgtttctttgggttgaccattcgagatgagatcatcccacgtgccgtttcatggttgatgggggaggctggactggaggagaatacccaaatatctgcacagcactccaatttcctcaagaatctatcaaaaaaatgtcaaggagtgtgttggaagtctaagaattatccaggaggagtgcaagctatgcttctacaggtactcccattgtgcttgtgtctgttttgcataaaaacaacagaatatgaaattggtgtagggctaaacacagaatatagaattactgatttagttcggcatacatctagtttccaatctacagaatgtagttaccttagtgatatcaggctcttgatgttaggtcaggccgtcaatcaggatcaatgtttggatgacgttaaagaagaatatgaagggaactgttataggaggagtgcaagctatgcttctacaggtactcccattgtgcttgtgtctgttttgcataaaaacaacagaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

308

Amino Acids

34.79

Weight (kDa)

8.11

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	3 cut(s)	122, 298, 810
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	624, 880
AfiI	CCNNNNNNNGG	2 cut(s)	222, 474
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	8 cut(s)	25, 92, 199, 268, 302, 324, 608, 864
AluI	AGCT	8 cut(s)	25, 92, 199, 268, 302, 324, 608, 864
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	122, 298, 810
AoxI	GGCC	2 cut(s)	11, 789
ApeKI	GCWGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	12
AxyI	CCTNAGG	1 cut(s)	98
BauI	CACGAG	2 cut(s)	139, 204
BbrPI	CACGTG	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	406, 475
BceAI	ACGGC	2 cut(s)	452, 776
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	66, 729
BfmI	CTRYAG	3 cut(s)	617, 741, 873
BisI	GCNGC	2 cut(s)	154, 216
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	155, 217
Bme1390I	CCNGG	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	202, 250
BpmI	CTGGAG	1 cut(s)	518
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 865, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 474
Bse1I	ACTGG	1 cut(s)	501
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	594
BseGI	GGATG	3 cut(s)	241, 456, 820
BseLI	CCNNNNNNNGG	2 cut(s)	222, 474
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	5 cut(s)	64, 67, 515, 612, 868
BseXI	GCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	2 cut(s)	13, 791
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	222, 474
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	13, 791
Bsp143I	GATC	5 cut(s)	114, 145, 290, 453, 802
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	13, 791
BspCNI	CTCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	122, 298, 810
BsrI	ACTGG	1 cut(s)	501
BssMI	GATC	5 cut(s)	114, 145, 290, 453, 802
BssSI	CACGAG	2 cut(s)	139, 204
Bst2BI	CACGAG	2 cut(s)	139, 204
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	385, 845
BstAPI	GCANNNNNTGC	2 cut(s)	610, 866
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	94, 606, 862
BstDEI	CTNAG	4 cut(s)	98, 303, 582, 758
BstF5I	GGATG	3 cut(s)	241, 456, 820
BstKTI	GATC	5 cut(s)	117, 148, 293, 456, 805
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	5 cut(s)	114, 145, 290, 453, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 610, 866
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	3 cut(s)	617, 741, 873
BstV1I	GCAGC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	13, 791
BtsCI	GGATG	3 cut(s)	241, 456, 820
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	94, 606, 862
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	623, 879
CviAII	CATG	3 cut(s)	118, 237, 474
CviQI	GTAC	2 cut(s)	623, 879
DdeI	CTNAG	4 cut(s)	98, 303, 582, 758
DpnI	GATC	5 cut(s)	116, 147, 292, 455, 804
DpnII	GATC	5 cut(s)	114, 145, 290, 453, 802
Eco32I	GATATC	2 cut(s)	279, 766
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	592
EcoRV	GATATC	2 cut(s)	279, 766
FaeI	CATG	3 cut(s)	121, 240, 477
FalI	AAGNNNNNCTT	4 cut(s)	597, 629, 853, 885
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	117, 236, 473
Fnu4HI	GCNGC	2 cut(s)	154, 216
FokI	GGATG	3 cut(s)	228, 443, 827
Fsp4HI	GCNGC	2 cut(s)	154, 216
FspBI	CTAG	2 cut(s)	66, 729
GluI	GCNGC	2 cut(s)	154, 216
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	13, 791
Hin1II	CATG	3 cut(s)	121, 240, 477
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	2 cut(s)	197, 322
HinfI	GANTC	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	344, 438
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	7 cut(s)	206, 223, 245, 446, 541, 775, 800
Hpy8I	GTNNAC	2 cut(s)	344, 438
HpyAV	CCTTC	3 cut(s)	145, 280, 830
HpyCH4III	ACNGT	2 cut(s)	385, 845
HpyCH4IV	ACGT	3 cut(s)	126, 463, 819
HpyCH4V	TGCA	7 cut(s)	153, 236, 521, 604, 651, 860, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 610, 866
HpyF3I	CTNAG	4 cut(s)	98, 303, 582, 758
HpySE526I	ACGT	3 cut(s)	126, 463, 819
Hsp92II	CATG	3 cut(s)	121, 240, 477
Kzo9I	GATC	5 cut(s)	114, 145, 290, 453, 802
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	202, 250
MaeI	CTAG	2 cut(s)	66, 729
MaeII	ACGT	3 cut(s)	126, 463, 819
MaeIII	GTNAC	2 cut(s)	127, 752
MalI	GATC	5 cut(s)	116, 147, 292, 455, 804
MboI	GATC	5 cut(s)	114, 145, 290, 453, 802
MboII	GAAGA	3 cut(s)	161, 221, 839
MluCI	AATT	5 cut(s)	191, 532, 586, 672, 702
MmeI	TCCRAC	1 cut(s)	554
MseI	TTAA	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	330, 610, 866
NdeII	GATC	5 cut(s)	114, 145, 290, 453, 802
NlaIII	CATG	3 cut(s)	121, 240, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	155, 217
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	592
PspCI	CACGTG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	12
RsaI	GTAC	2 cut(s)	624, 880
RsaNI	GTAC	2 cut(s)	623, 879
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	2 cut(s)	154, 216
Sau3AI	GATC	5 cut(s)	114, 145, 290, 453, 802
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	202, 250
SfcI	CTRYAG	3 cut(s)	617, 741, 873
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	191, 532, 586, 672, 702
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	2 cut(s)	66, 729
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	2 cut(s)	385, 845
TaiI	ACGT	3 cut(s)	129, 466, 822
TaqI	TCGA	1 cut(s)	445
TasI	AATT	5 cut(s)	191, 532, 586, 672, 702
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	389, 462, 684, 849
TspRI	CASTG	1 cut(s)	179
XspI	CTAG	2 cut(s)	66, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.