Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

47414020 .. 47415270

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAGATACTGTTGAGTTCTTGTGGTGTGTTTACTACAACTTCTTGATCATTCACGCTGTTACATTACATGATCATTTTATAGAAGAAAAATATGATGCATTGAAAGCAGAGTTTGACAAGGATAGAGCATCAATTCAAGCAAAATATCTTCAATCATGTCAAACTTTGTACGCACAGCGATACAATATCATAAATGATGAAGCAGATGGAGAGAGTATTGATCCTGAAGCAGATGGAGTTAGTAGCGACTCTGAAGAGGAAGCATTTGTCAATGAGAAAGGGGTGCCTAACTTCTGGCTCTATGCATTGCAAAACAATGACTATATAGACGACGAGATTAGCTTGGTAGAAATGCCAGAGCGAGCAAGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

126

Amino Acids

14.7

Weight (kDa)

4.3

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	28 - 115	1.7e-14	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	249, 276
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	106, 140, 155
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
AlwI	GGATC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	286
BccI	CCATC	2 cut(s)	203, 230
BclI	TGATCA	2 cut(s)	48, 73
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	2 cut(s)	88, 140
Bse3DI	GCAATG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	48, 73, 223
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	308
BssMI	GATC	3 cut(s)	48, 73, 223
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	366
BstKTI	GATC	3 cut(s)	51, 76, 226
BstMBI	GATC	3 cut(s)	48, 73, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	71, 159
CviJI	RGCY	2 cut(s)	301, 345
CviKI_1	RGCY	2 cut(s)	301, 345
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	3 cut(s)	50, 75, 225
DpnII	GATC	3 cut(s)	48, 73, 223
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	249, 276
EcoT22I	ATGCAT	2 cut(s)	103, 310
FaeI	CATG	2 cut(s)	74, 162
FaiI	YATR	8 cut(s)	72, 83, 96, 160, 194, 306, 327, 329
FatI	CATG	2 cut(s)	70, 158
FbaI	TGATCA	2 cut(s)	48, 73
Hin1II	CATG	2 cut(s)	74, 162
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	46, 227
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	101, 308, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	74, 162
Ksp22I	TGATCA	2 cut(s)	48, 73
Kzo9I	GATC	3 cut(s)	48, 73, 223
LpnPI	CCDG	3 cut(s)	240, 283, 372
LweI	GCATC	2 cut(s)	88, 140
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	50, 75, 225
MboI	GATC	3 cut(s)	48, 73, 223
MboII	GAAGA	3 cut(s)	98, 143, 269
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	1 cut(s)	253
Mph1103I	ATGCAT	2 cut(s)	103, 310
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	48, 73, 223
NlaIII	CATG	2 cut(s)	74, 162
NlaIV	GGNNCC	1 cut(s)	288
NsiI	ATGCAT	2 cut(s)	103, 310
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	288
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
Sau3AI	GATC	3 cut(s)	48, 73, 223
SchI	GAGTC	1 cut(s)	245
SetI	ASST	1 cut(s)	347
SfaNI	GCATC	2 cut(s)	88, 140
Sse9I	AATT	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	13
TasI	AATT	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	17, 216
Zsp2I	ATGCAT	2 cut(s)	103, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.